Wall clock time and date at job start Sun Mar 29 2020 22:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.50389 * 2 1 4 4 C 1.53032 * 109.50547 * 239.91497 * 2 1 3 5 5 N 1.46846 * 109.52260 * 180.84170 * 4 2 1 6 6 C 1.46846 * 111.19997 * 61.74591 * 5 4 2 7 7 C 1.53040 * 109.51964 * 298.25655 * 6 5 4 8 8 H 1.09004 * 109.50602 * 299.23671 * 7 6 5 9 9 C 1.52998 * 109.53460 * 179.14276 * 7 6 5 10 10 N 1.46499 * 109.47329 * 65.17558 * 9 7 6 11 11 C 1.34782 * 119.99935 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99756 * 179.97438 * 11 10 9 14 14 C 1.50709 * 109.46731 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00048 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99618 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00182 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47237 * 59.99482 * 18 16 14 20 20 H 1.48503 * 109.47080 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46927 * 299.99707 * 18 16 14 22 22 C 1.53119 * 109.28089 * 59.17912 * 7 6 5 23 23 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47360 * 300.08196 * 1 2 3 25 25 H 1.08996 * 109.46583 * 60.07982 * 1 2 3 26 26 H 1.09001 * 109.46314 * 60.82904 * 4 2 1 27 27 H 1.08999 * 109.45415 * 300.85384 * 4 2 1 28 28 H 1.00904 * 111.00089 * 185.84316 * 5 4 2 29 29 H 1.08996 * 109.46231 * 58.27402 * 6 5 4 30 30 H 1.09004 * 109.46418 * 178.24241 * 6 5 4 31 31 H 1.09001 * 109.47322 * 185.17698 * 9 7 6 32 32 H 1.09007 * 109.46974 * 305.17773 * 9 7 6 33 33 H 0.96999 * 120.00052 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.47266 * 299.99684 * 13 11 10 35 35 H 1.08994 * 109.47135 * 60.00359 * 13 11 10 36 36 H 0.96999 * 120.00063 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.52394 * 182.44064 * 22 7 6 38 38 H 1.08999 * 109.51878 * 62.24548 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0410 -0.7231 -1.2482 5 7 3.5093 -0.7409 -1.2384 6 6 4.0238 -1.4716 -0.0731 7 6 3.5719 -0.7708 1.2102 8 1 3.9680 0.2445 1.2292 9 6 4.0898 -1.5438 2.4247 10 7 5.5535 -1.4870 2.4520 11 6 6.2335 -2.1028 3.4394 12 8 5.6337 -2.7044 4.3051 13 6 7.7391 -2.0448 3.4671 14 6 8.2492 -2.8072 4.6629 15 1 7.5527 -3.2855 5.3356 16 6 9.6049 -2.8932 4.8985 17 7 10.4530 -2.3104 4.0795 18 14 10.2372 -3.8376 6.3810 19 1 9.7983 -5.2533 6.2901 20 1 11.7209 -3.7806 6.4083 21 1 9.6951 -3.2301 7.6229 22 6 2.0420 -0.7235 1.2486 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5151 0.8892 25 1 -0.3632 0.5126 -0.8907 26 1 1.6901 -0.2021 -2.1390 27 1 1.6654 -1.7463 -1.2542 28 1 3.8720 -1.1279 -2.0968 29 1 3.6389 -2.4913 -0.0850 30 1 5.1129 -1.4942 -0.1104 31 1 3.6918 -1.0977 3.3361 32 1 3.7678 -2.5831 2.3583 33 1 6.0332 -1.0068 1.7591 34 1 8.1367 -2.4910 2.5556 35 1 8.0615 -1.0058 3.5337 36 1 11.4068 -2.3712 4.2451 37 1 1.7164 -0.1870 2.1398 38 1 1.6466 -1.7391 1.2689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219641311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:29 Heat of formation + Delta-G solvation = -65.283696 kcal Electronic energy + Delta-G solvation = -17144.079759 eV Core-core repulsion = 14406.027587 eV Total energy + Delta-G solvation = -2738.052172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48441 -38.27873 -34.70841 -33.35461 -32.88495 -31.59732 -28.89366 -26.75405 -25.73485 -23.70219 -23.18234 -20.71695 -20.01446 -19.38056 -16.60885 -16.34139 -15.66661 -15.43112 -15.06754 -14.90982 -14.32151 -14.26240 -13.96396 -13.74288 -12.91089 -12.77611 -12.58778 -12.26555 -12.12628 -12.01117 -11.67841 -11.17457 -10.97426 -10.80858 -10.79423 -10.55836 -10.51679 -10.42353 -9.92339 -9.25196 -8.65321 -8.59900 -8.44579 -8.35343 -6.02685 -4.02053 3.39479 3.41296 3.46926 3.77515 3.93885 3.97864 4.49940 4.54798 4.64505 4.75222 4.85698 5.15083 5.17005 5.30052 5.35406 5.39291 5.48110 5.50441 5.55504 5.66665 5.77396 5.79439 5.90115 5.97145 6.03985 6.10159 6.30875 6.45569 6.81965 7.10239 7.17313 7.23612 7.37164 7.99055 8.10483 8.49113 9.08617 9.28913 9.62898 11.09758 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058420 B = 0.004007 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.170112 B = 6985.263185 C = 7309.327944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.078 0.922 4 C 0.062 3.938 5 N -0.691 5.691 6 C 0.061 3.939 7 C -0.095 4.095 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.749 5.749 11 C 0.513 3.487 12 O -0.548 6.548 13 C 0.005 3.995 14 C -0.508 4.508 15 H 0.074 0.926 16 C 0.054 3.946 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.109 4.109 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.343 0.657 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 5.125 -12.185 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.067 4.067 5 N -0.322 5.322 6 C -0.068 4.068 7 C -0.115 4.115 8 H 0.103 0.897 9 C 0.001 3.999 10 N -0.404 5.404 11 C 0.303 3.697 12 O -0.424 6.424 13 C -0.034 4.034 14 C -0.547 4.547 15 H 0.092 0.908 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.161 0.839 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.229 0.771 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.856 5.306 -11.262 20.955 hybrid contribution 0.457 -1.147 0.072 1.237 sum -16.399 4.159 -11.191 20.285 Atomic orbital electron populations 1.21796 0.95029 1.01786 1.01825 1.21155 0.94995 1.00392 0.94326 0.90334 1.21978 0.87895 0.98558 0.98316 1.60235 1.07868 1.58626 1.05460 1.21989 1.00198 0.94576 0.90025 1.21414 0.95834 1.00575 0.93635 0.89736 1.21188 0.81981 0.99774 0.96943 1.46342 1.06009 1.57671 1.30350 1.22003 0.92344 0.76093 0.79253 1.90529 1.71385 1.42561 1.37955 1.19229 0.84613 0.99672 0.99930 1.21143 0.91823 1.32440 1.09264 0.90774 1.25009 0.96802 0.95865 0.96959 1.69950 1.02416 1.44403 1.37378 0.86485 0.77143 0.80473 0.82912 1.20152 1.21375 1.20126 1.21627 0.94430 1.00781 0.97875 0.92796 0.92350 0.92667 0.91028 0.95327 0.83905 0.94977 0.90269 0.92008 0.92394 0.77064 0.93529 0.93479 0.92878 0.91377 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.09 -0.78 2.88 -90.54 -0.26 -1.04 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.06 0.53 5.83 -3.84 -0.02 0.51 16 5 N -0.69 -6.66 6.84 -113.82 -0.78 -7.44 16 6 C 0.06 0.67 5.70 -3.83 -0.02 0.65 16 7 C -0.10 -1.09 2.38 -90.54 -0.22 -1.30 16 8 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 9 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 10 N -0.75 -12.99 5.30 -60.29 -0.32 -13.30 16 11 C 0.51 11.90 7.82 -10.98 -0.09 11.82 16 12 O -0.55 -14.62 15.46 5.55 0.09 -14.53 16 13 C 0.00 0.12 5.46 -29.03 -0.16 -0.03 16 14 C -0.51 -15.01 8.92 -34.44 -0.31 -15.32 16 15 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 18 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.11 -1.08 4.57 -26.61 -0.12 -1.20 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.34 2.80 8.90 -39.29 -0.35 2.45 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.89 7.22 -51.93 -0.37 0.52 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.40 5.90 7.67 -40.82 -0.31 5.59 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -32.63 307.88 -8.07 -40.70 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.45 Total: 1.85 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.97 Total: -3.31 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.36 Total: -46.75 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.63 -8.07 -40.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219641311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.581 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds