Wall clock time and date at job start Sun Mar 29 2020 22:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.50389 * 2 1 4 4 C 1.53032 * 109.50547 * 239.91497 * 2 1 3 5 5 N 1.46846 * 109.52260 * 180.84170 * 4 2 1 6 6 C 1.46846 * 111.19997 * 61.74591 * 5 4 2 7 7 C 1.53040 * 109.51964 * 298.25655 * 6 5 4 8 8 H 1.09004 * 109.50602 * 299.23671 * 7 6 5 9 9 C 1.52998 * 109.53460 * 179.14276 * 7 6 5 10 10 N 1.46499 * 109.47329 * 65.17558 * 9 7 6 11 11 C 1.34782 * 119.99935 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99756 * 179.97438 * 11 10 9 14 14 C 1.50709 * 109.46731 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00048 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99618 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00182 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47237 * 59.99482 * 18 16 14 20 20 H 1.48503 * 109.47080 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46927 * 299.99707 * 18 16 14 22 22 C 1.53119 * 109.28089 * 59.17912 * 7 6 5 23 23 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47360 * 300.08196 * 1 2 3 25 25 H 1.08996 * 109.46583 * 60.07982 * 1 2 3 26 26 H 1.09001 * 109.46314 * 60.82904 * 4 2 1 27 27 H 1.08999 * 109.45415 * 300.85384 * 4 2 1 28 28 H 1.00904 * 111.00089 * 185.84316 * 5 4 2 29 29 H 1.08996 * 109.46231 * 58.27402 * 6 5 4 30 30 H 1.09004 * 109.46418 * 178.24241 * 6 5 4 31 31 H 1.09001 * 109.47322 * 185.17698 * 9 7 6 32 32 H 1.09007 * 109.46974 * 305.17773 * 9 7 6 33 33 H 0.96999 * 120.00052 * 359.97438 * 10 9 7 34 34 H 1.08996 * 109.47266 * 299.99684 * 13 11 10 35 35 H 1.08994 * 109.47135 * 60.00359 * 13 11 10 36 36 H 0.96999 * 120.00063 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.52394 * 182.44064 * 22 7 6 38 38 H 1.08999 * 109.51878 * 62.24548 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0410 -0.7231 -1.2482 5 7 3.5093 -0.7409 -1.2384 6 6 4.0238 -1.4716 -0.0731 7 6 3.5719 -0.7708 1.2102 8 1 3.9680 0.2445 1.2292 9 6 4.0898 -1.5438 2.4247 10 7 5.5535 -1.4870 2.4520 11 6 6.2335 -2.1028 3.4394 12 8 5.6337 -2.7044 4.3051 13 6 7.7391 -2.0448 3.4671 14 6 8.2492 -2.8072 4.6629 15 1 7.5527 -3.2855 5.3356 16 6 9.6049 -2.8932 4.8985 17 7 10.4530 -2.3104 4.0795 18 14 10.2372 -3.8376 6.3810 19 1 9.7983 -5.2533 6.2901 20 1 11.7209 -3.7806 6.4083 21 1 9.6951 -3.2301 7.6229 22 6 2.0420 -0.7235 1.2486 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5151 0.8892 25 1 -0.3632 0.5126 -0.8907 26 1 1.6901 -0.2021 -2.1390 27 1 1.6654 -1.7463 -1.2542 28 1 3.8720 -1.1279 -2.0968 29 1 3.6389 -2.4913 -0.0850 30 1 5.1129 -1.4942 -0.1104 31 1 3.6918 -1.0977 3.3361 32 1 3.7678 -2.5831 2.3583 33 1 6.0332 -1.0068 1.7591 34 1 8.1367 -2.4910 2.5556 35 1 8.0615 -1.0058 3.5337 36 1 11.4068 -2.3712 4.2451 37 1 1.7164 -0.1870 2.1398 38 1 1.6466 -1.7391 1.2689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219641311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:28 Heat of formation + Delta-G solvation = -89.112982 kcal Electronic energy + Delta-G solvation = -17145.113074 eV Core-core repulsion = 14406.027587 eV Total energy + Delta-G solvation = -2739.085487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72304 -39.69471 -36.07991 -35.08967 -34.09122 -32.88928 -30.88339 -27.44205 -27.14904 -25.15568 -24.45771 -21.67362 -21.44046 -20.51929 -18.52519 -17.83809 -17.00323 -16.87245 -16.52981 -16.19094 -15.79421 -15.44094 -14.95902 -14.75152 -14.39310 -14.16866 -13.93432 -13.62667 -13.29097 -13.01282 -12.81264 -12.74796 -12.56782 -12.51574 -12.03468 -11.87528 -11.61116 -11.46986 -11.36748 -11.23120 -10.62660 -10.50837 -9.97634 -9.41511 -8.25004 -6.32491 1.40250 1.43281 1.51941 1.89404 2.34015 2.52937 3.10187 3.19501 3.71414 3.83133 3.88758 4.03794 4.23063 4.36504 4.43792 4.55669 4.64206 4.66031 4.73374 4.79919 4.80881 4.90574 4.95416 5.07721 5.08919 5.19131 5.26969 5.30347 5.34312 5.51632 5.59019 5.74430 6.04196 6.06340 6.48406 6.70921 6.84301 7.33734 7.51960 8.87019 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058420 B = 0.004007 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.170112 B = 6985.263185 C = 7309.327944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.073 0.927 4 C 0.060 3.940 5 N -0.695 5.695 6 C 0.063 3.937 7 C -0.084 4.084 8 H 0.085 0.915 9 C 0.128 3.872 10 N -0.725 5.725 11 C 0.517 3.483 12 O -0.587 6.587 13 C 0.007 3.993 14 C -0.539 4.539 15 H 0.055 0.945 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.108 4.108 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.029 0.971 28 H 0.352 0.648 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.410 0.590 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 5.462 -12.893 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.069 4.069 5 N -0.326 5.326 6 C -0.066 4.066 7 C -0.103 4.103 8 H 0.103 0.897 9 C 0.004 3.996 10 N -0.378 5.378 11 C 0.306 3.694 12 O -0.467 6.467 13 C -0.032 4.032 14 C -0.578 4.578 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.197 1.197 22 C -0.146 4.146 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.047 0.953 28 H 0.171 0.829 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.571 5.677 -12.032 22.039 hybrid contribution 0.648 -1.211 0.223 1.392 sum -16.923 4.465 -11.809 21.113 Atomic orbital electron populations 1.21762 0.93692 1.02095 1.02513 1.21134 0.96082 0.99777 0.93575 0.90832 1.22050 0.87140 0.98790 0.98887 1.60224 1.08674 1.58345 1.05379 1.21903 0.99922 0.94407 0.90401 1.21306 0.96970 0.99804 0.92215 0.89694 1.21338 0.79765 1.00011 0.98528 1.46041 1.07350 1.55689 1.28767 1.21472 0.91494 0.76453 0.79994 1.90506 1.71724 1.44674 1.39841 1.19077 0.86811 0.98736 0.98572 1.21363 0.92281 1.33611 1.10515 0.92718 1.25800 0.96784 0.96536 0.99761 1.70022 1.02858 1.44895 1.38663 0.85506 0.77179 0.79069 0.79307 1.19743 1.19810 1.19744 1.21636 0.92980 1.01096 0.98914 0.92666 0.92146 0.91562 0.89556 0.95283 0.82866 0.95460 0.90799 0.92604 0.93066 0.75377 0.93942 0.93998 0.92352 0.91087 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.20 71.98 0.66 -1.06 16 2 C -0.09 -1.33 2.88 -10.74 -0.03 -1.36 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.06 0.90 5.83 86.32 0.50 1.41 16 5 N -0.69 -12.05 6.84 -514.01 -3.52 -15.56 16 6 C 0.06 1.29 5.70 86.33 0.49 1.79 16 7 C -0.08 -1.80 2.38 -10.74 -0.03 -1.83 16 8 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 9 C 0.13 3.71 5.07 86.38 0.44 4.15 16 10 N -0.72 -24.90 5.30 -463.05 -2.45 -27.35 16 11 C 0.52 24.27 7.82 87.66 0.69 24.96 16 12 O -0.59 -31.96 15.46 -3.04 -0.05 -32.01 16 13 C 0.01 0.39 5.46 29.10 0.16 0.55 16 14 C -0.54 -32.42 8.92 25.60 0.23 -32.19 16 15 H 0.05 3.45 6.75 -2.91 -0.02 3.43 16 16 C 0.01 0.57 5.46 84.66 0.46 1.03 16 17 N -0.92 -54.73 13.29 21.45 0.28 -54.44 16 18 Si 0.96 45.84 29.54 68.60 2.03 47.86 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 22 C -0.11 -1.97 4.57 30.68 0.14 -1.83 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.35 5.07 8.90 -89.69 -0.80 4.27 16 29 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 1.58 7.22 -2.38 -0.02 1.56 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.41 11.89 7.67 -92.71 -0.71 11.18 16 34 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.32 307.88 -0.46 -69.78 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.47 Total: 16.10 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 3.71 Total: -4.38 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -5.69 Total: -97.36 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.05 Total: -32.01 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -69.32 -0.46 -69.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219641311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.334 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds