Wall clock time and date at job start Sun Mar 29 2020 22:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.54651 * 2 1 4 4 C 1.52993 * 117.51680 * 214.30080 * 2 1 3 5 5 C 1.52991 * 117.49727 * 145.67192 * 2 1 3 6 6 H 1.08996 * 117.50635 * 359.97438 * 5 2 1 7 7 C 1.50708 * 117.49615 * 214.99918 * 5 2 1 8 8 O 1.21280 * 120.00047 * 0.02562 * 7 5 2 9 9 N 1.34779 * 119.99614 * 180.02562 * 7 5 2 10 10 C 1.46505 * 119.99568 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47138 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47154 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99886 * 269.99892 * 13 12 11 15 15 C 1.36933 * 120.00112 * 90.00062 * 13 12 11 16 16 H 1.07999 * 119.99624 * 340.08793 * 15 13 12 17 17 C 1.38808 * 119.99943 * 160.08779 * 15 13 12 18 18 N 1.31617 * 120.00371 * 344.12820 * 17 15 13 19 19 Si 1.86805 * 119.99818 * 164.12255 * 17 15 13 20 20 H 1.48494 * 109.47170 * 265.41698 * 19 17 15 21 21 H 1.48502 * 109.47086 * 145.41656 * 19 17 15 22 22 H 1.48501 * 109.46957 * 25.41742 * 19 17 15 23 23 H 1.08996 * 109.47052 * 274.33201 * 1 2 3 24 24 H 1.09000 * 109.47221 * 34.32567 * 1 2 3 25 25 H 1.08993 * 109.47144 * 154.33100 * 1 2 3 26 26 H 1.09005 * 117.50180 * 145.02880 * 4 2 1 27 27 H 1.09005 * 117.49831 * 0.02562 * 4 2 1 28 28 H 0.96998 * 120.00391 * 359.97438 * 9 7 5 29 29 H 1.09000 * 109.47141 * 59.99984 * 10 9 7 30 30 H 1.08995 * 109.46617 * 299.99923 * 10 9 7 31 31 H 1.08994 * 109.47224 * 59.99665 * 11 10 9 32 32 H 1.09005 * 109.47356 * 299.99429 * 11 10 9 33 33 H 1.09005 * 109.46696 * 59.99699 * 12 11 10 34 34 H 1.08995 * 109.46661 * 300.00218 * 12 11 10 35 35 H 1.08996 * 109.46962 * 265.44252 * 14 13 12 36 36 H 1.09001 * 109.46899 * 25.44349 * 14 13 12 37 37 H 1.08996 * 109.47041 * 145.44439 * 14 13 12 38 38 H 0.97002 * 120.00330 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2364 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2692 7 6 3.5291 -0.7805 1.4614 8 8 3.9711 0.3473 1.4022 9 7 4.1937 -1.7296 2.1499 10 6 5.4500 -1.3987 2.8271 11 6 5.9943 -2.6443 3.5292 12 6 7.3067 -2.2989 4.2359 13 7 7.8276 -3.4915 4.9087 14 6 7.4425 -3.7787 6.2927 15 6 8.6744 -4.3377 4.2440 16 1 8.7114 -4.3265 3.1647 17 6 9.4850 -5.2099 4.9573 18 7 9.6803 -5.0224 6.2453 19 14 10.2987 -6.6500 4.0892 20 1 9.4527 -7.8611 4.2401 21 1 11.6333 -6.9005 4.6905 22 1 10.4571 -6.3333 2.6471 23 1 -0.3633 0.0776 1.0247 24 1 -0.3634 0.8487 -0.5795 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1721 -0.8750 -1.2677 27 1 1.6119 -1.8584 -1.2683 28 1 3.8400 -2.6315 2.1976 29 1 5.2703 -0.6159 3.5641 30 1 6.1763 -1.0477 2.0940 31 1 6.1739 -3.4273 2.7925 32 1 5.2678 -2.9948 4.2623 33 1 7.1274 -1.5157 4.9725 34 1 8.0329 -1.9486 3.5025 35 1 8.1961 -3.3773 6.9702 36 1 6.4791 -3.3154 6.5054 37 1 7.3659 -4.8569 6.4323 38 1 10.2472 -5.6317 6.7438 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233489333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:37 Heat of formation + Delta-G solvation = -25.291447 kcal Electronic energy + Delta-G solvation = -16694.587059 eV Core-core repulsion = 13958.269081 eV Total energy + Delta-G solvation = -2736.317978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02626 -38.24531 -37.62848 -36.12985 -33.78514 -31.75300 -29.61414 -27.97896 -27.24540 -24.91201 -23.26053 -22.18484 -21.72368 -20.80691 -18.74008 -18.36913 -17.23303 -16.71822 -16.66156 -15.77420 -15.59877 -15.24097 -14.87137 -14.57172 -14.53276 -14.10130 -13.69231 -13.39118 -13.06063 -12.90788 -12.80690 -12.66484 -12.49960 -12.30765 -12.28832 -12.07791 -11.84013 -11.50753 -11.33772 -11.07077 -10.84479 -10.61432 -10.11085 -8.82148 -7.83383 -5.29274 1.47125 1.47303 1.48062 1.57562 2.14570 2.52124 2.86453 3.29799 3.63997 3.71071 3.79662 3.88560 4.09844 4.19583 4.30046 4.43065 4.45943 4.63222 4.74421 4.80163 4.84920 4.88021 4.91911 4.95850 5.06567 5.22138 5.25342 5.27508 5.41279 5.45710 5.50072 5.62028 5.70884 6.31558 6.55402 7.14748 7.22671 7.87595 8.30354 9.20717 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043695 B = 0.003679 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.645835 B = 7608.913906 C = 7932.530861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.129 4.129 3 H 0.091 0.909 4 C -0.138 4.138 5 C -0.196 4.196 6 H 0.150 0.850 7 C 0.533 3.467 8 O -0.592 6.592 9 N -0.714 5.714 10 C 0.131 3.869 11 C -0.127 4.127 12 C 0.150 3.850 13 N -0.622 5.622 14 C 0.176 3.824 15 C -0.262 4.262 16 H 0.073 0.927 17 C -0.058 4.058 18 N -0.941 5.941 19 Si 0.969 3.031 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.267 1.267 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.415 0.585 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.001 0.999 36 H 0.033 0.967 37 H 0.018 0.982 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 5.264 -11.658 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.217 4.217 6 H 0.168 0.832 7 C 0.321 3.679 8 O -0.473 6.473 9 N -0.365 5.365 10 C 0.006 3.994 11 C -0.167 4.167 12 C 0.023 3.977 13 N -0.345 5.345 14 C 0.031 3.969 15 C -0.392 4.392 16 H 0.091 0.909 17 C -0.253 4.253 18 N -0.588 5.588 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.192 1.192 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.151 0.849 28 H 0.251 0.749 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.077 5.967 -11.565 22.274 hybrid contribution 0.911 -1.131 0.186 1.464 sum -17.167 4.836 -11.378 21.155 Atomic orbital electron populations 1.21398 0.90155 1.03381 1.02594 1.22412 0.96683 0.94034 1.01665 0.89049 1.23201 1.02882 1.01561 0.89855 1.22377 0.96352 1.06413 0.96531 0.83241 1.20348 0.85557 0.84076 0.77917 1.90664 1.70192 1.23062 1.63403 1.45959 1.24225 1.14037 1.52285 1.21179 0.84965 0.97575 0.95678 1.22150 0.98554 0.96406 0.99594 1.20774 0.93519 0.88090 0.95302 1.44198 1.53201 1.25274 1.11839 1.20547 0.94160 0.97653 0.84586 1.19569 1.14778 1.13732 0.91102 0.90894 1.25758 0.99361 1.03328 0.96804 1.70266 1.41634 1.38353 1.08566 0.85212 0.77052 0.79701 0.78262 1.21271 1.22375 1.19175 0.91855 0.91093 0.90666 0.89590 0.84921 0.74851 0.92098 0.92631 0.92114 0.91533 0.93270 0.93869 0.98098 0.94856 0.96306 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.19 71.98 0.73 -0.57 16 2 C -0.13 -2.19 5.92 -10.80 -0.06 -2.25 16 3 H 0.09 2.02 7.67 -2.39 -0.02 2.00 16 4 C -0.14 -2.04 9.88 30.59 0.30 -1.74 16 5 C -0.20 -3.46 5.91 -11.54 -0.07 -3.52 16 6 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 7 C 0.53 13.99 7.61 87.66 0.67 14.66 16 8 O -0.59 -20.82 16.26 -3.03 -0.05 -20.87 16 9 N -0.71 -17.10 5.56 -463.05 -2.57 -19.68 16 10 C 0.13 3.70 5.67 86.38 0.49 4.19 16 11 C -0.13 -3.99 5.65 30.59 0.17 -3.82 16 12 C 0.15 5.94 5.65 86.38 0.49 6.42 16 13 N -0.62 -31.17 2.93 -726.94 -2.13 -33.30 16 14 C 0.18 8.71 8.98 127.77 1.15 9.86 16 15 C -0.26 -14.36 9.67 84.03 0.81 -13.55 16 16 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 17 C -0.06 -3.26 5.04 84.86 0.43 -2.83 16 18 N -0.94 -56.30 10.70 21.65 0.23 -56.07 16 19 Si 0.97 45.07 29.58 68.60 2.03 47.10 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.59 7.90 -2.39 -0.02 0.57 16 26 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.13 1.21 8.05 -2.38 -0.02 1.19 16 28 H 0.41 7.63 8.47 -92.71 -0.79 6.84 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.05 1.83 8.07 -2.38 -0.02 1.81 16 34 H 0.04 1.74 8.04 -2.39 -0.02 1.73 16 35 H 0.00 0.04 7.44 -2.39 -0.02 0.02 16 36 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 37 H 0.02 0.99 7.17 -2.39 -0.02 0.97 16 38 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -69.43 318.69 2.86 -66.58 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.24 Total: 9.39 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.11 Total: 6.85 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -4.47 Total: -109.04 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.43 2.86 -66.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233489333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds