Wall clock time and date at job start Sun Mar 29 2020 22:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 115.56315 * 2 1 4 4 C 1.53073 * 117.49235 * 145.70190 * 2 1 3 5 5 C 1.52993 * 117.50181 * 214.30233 * 2 1 3 6 6 H 1.09009 * 117.49781 * 0.02562 * 5 2 1 7 7 C 1.50696 * 117.49995 * 145.02031 * 5 2 1 8 8 O 1.21285 * 120.00062 * 359.91955 * 7 5 2 9 9 N 1.34784 * 120.00043 * 179.91324 * 7 5 2 10 10 C 1.46497 * 119.99757 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46753 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47064 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47078 * 179.97438 * 12 11 10 14 14 C 1.46506 * 119.99730 * 90.00030 * 13 12 11 15 15 C 1.36937 * 120.00203 * 270.00171 * 13 12 11 16 16 H 1.07998 * 119.99690 * 142.03904 * 15 13 12 17 17 C 1.38804 * 120.00186 * 322.03807 * 15 13 12 18 18 N 1.31624 * 120.00367 * 157.01981 * 17 15 13 19 19 Si 1.86804 * 119.99763 * 337.02375 * 17 15 13 20 20 H 1.48501 * 109.47471 * 95.68266 * 19 17 15 21 21 H 1.48513 * 109.46851 * 215.67801 * 19 17 15 22 22 H 1.48495 * 109.47429 * 335.67527 * 19 17 15 23 23 H 1.08998 * 109.47173 * 205.69283 * 1 2 3 24 24 H 1.09004 * 109.47386 * 325.69761 * 1 2 3 25 25 H 1.08997 * 109.46666 * 85.69191 * 1 2 3 26 26 H 1.09000 * 117.49172 * 359.97438 * 4 2 1 27 27 H 1.08999 * 117.53429 * 214.96170 * 4 2 1 28 28 H 0.96999 * 119.99891 * 359.72506 * 9 7 5 29 29 H 1.09002 * 109.46979 * 299.99772 * 10 9 7 30 30 H 1.08999 * 109.47419 * 59.99973 * 10 9 7 31 31 H 1.08994 * 109.47321 * 299.99774 * 11 10 9 32 32 H 1.09007 * 109.47259 * 60.00086 * 11 10 9 33 33 H 1.08994 * 109.47113 * 300.00203 * 12 11 10 34 34 H 1.09001 * 109.46365 * 60.00240 * 12 11 10 35 35 H 1.09005 * 109.46523 * 85.65268 * 14 13 12 36 36 H 1.08999 * 109.46701 * 205.64783 * 14 13 12 37 37 H 1.08989 * 109.47164 * 325.65095 * 14 13 12 38 38 H 0.96996 * 119.99890 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2367 -1.1218 0.7652 5 6 2.2365 -1.1210 -0.7648 6 1 1.6113 -1.8584 -1.2684 7 6 3.5293 -0.7812 -1.4606 8 8 3.9711 0.3468 -1.4024 9 7 4.1947 -1.7309 -2.1476 10 6 5.4518 -1.4007 -2.8235 11 6 5.9968 -2.6469 -3.5240 12 6 7.3094 -2.3019 -4.2306 13 7 7.8315 -3.4954 -4.9008 14 6 7.4475 -3.7854 -6.2846 15 6 8.6785 -4.3399 -4.2339 16 1 8.6016 -5.4073 -4.3792 17 6 9.6358 -3.8240 -3.3713 18 7 10.1314 -4.5768 -2.4120 19 14 10.2207 -2.0613 -3.5718 20 1 9.4536 -1.1780 -2.6572 21 1 11.6665 -1.9790 -3.2422 22 1 10.0075 -1.6255 -4.9753 23 1 -0.3633 -0.9260 0.4455 24 1 -0.3634 0.8489 0.5792 25 1 -0.3632 0.0772 -1.0248 26 1 1.6112 -1.8590 1.2686 27 1 3.1719 -0.8768 1.2685 28 1 3.8436 -2.6341 -2.1907 29 1 5.2729 -0.6185 -3.5614 30 1 6.1774 -1.0492 -2.0900 31 1 6.1755 -3.4294 -2.7866 32 1 5.2710 -2.9980 -4.2577 33 1 7.1302 -1.5196 -4.9681 34 1 8.0352 -1.9507 -3.4972 35 1 8.1117 -3.2527 -6.9652 36 1 7.5250 -4.8574 -6.4660 37 1 6.4203 -3.4619 -6.4519 38 1 10.8006 -4.2163 -1.8095 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233489348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:39 Heat of formation + Delta-G solvation = -1.457685 kcal Electronic energy + Delta-G solvation = -16992.392466 eV Core-core repulsion = 14257.107997 eV Total energy + Delta-G solvation = -2735.284468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94391 -37.17575 -36.31747 -34.68358 -31.83380 -30.84582 -28.96081 -26.51031 -25.66343 -23.62259 -21.68635 -21.02160 -20.75163 -19.82967 -17.39722 -16.77269 -15.78658 -15.61537 -15.16500 -14.59243 -14.42335 -13.86835 -13.56351 -13.36722 -13.21169 -12.96077 -12.69296 -12.23347 -12.16091 -11.72441 -11.61951 -11.35700 -11.19328 -10.92472 -10.57006 -10.50291 -10.41383 -10.27306 -9.83164 -9.70286 -9.53832 -8.90663 -8.52288 -6.83677 -6.02293 -3.43523 2.53420 3.20615 3.32001 3.47195 3.52997 3.67852 4.51537 4.52591 4.57638 4.65198 4.95372 5.02259 5.08452 5.33594 5.40430 5.48537 5.49201 5.51429 5.64622 5.77072 5.80327 5.84910 6.04892 6.09766 6.16911 6.27047 6.33284 6.51785 6.65215 6.69957 6.76016 6.92171 7.62618 8.03703 8.31887 8.35589 8.96757 9.69183 10.10591 11.13289 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033726 B = 0.004599 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.010701 B = 6086.993723 C = 6317.303352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.149 4.149 5 C -0.191 4.191 6 H 0.122 0.878 7 C 0.538 3.462 8 O -0.547 6.547 9 N -0.721 5.721 10 C 0.117 3.883 11 C -0.145 4.145 12 C 0.142 3.858 13 N -0.613 5.613 14 C 0.124 3.876 15 C -0.273 4.273 16 H 0.078 0.922 17 C 0.037 3.963 18 N -0.899 5.899 19 Si 0.876 3.124 20 H -0.284 1.284 21 H -0.300 1.300 22 H -0.270 1.270 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.401 0.599 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.006 0.994 36 H 0.045 0.955 37 H 0.026 0.974 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.703 5.951 2.773 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 H 0.135 0.865 4 C -0.187 4.187 5 C -0.212 4.212 6 H 0.140 0.860 7 C 0.324 3.676 8 O -0.425 6.425 9 N -0.371 5.371 10 C -0.006 4.006 11 C -0.186 4.186 12 C 0.016 3.984 13 N -0.337 5.337 14 C -0.021 4.021 15 C -0.401 4.401 16 H 0.096 0.904 17 C -0.164 4.164 18 N -0.539 5.539 19 Si 0.705 3.295 20 H -0.212 1.212 21 H -0.228 1.228 22 H -0.194 1.194 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.235 0.765 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.222 6.712 2.889 18.708 hybrid contribution 0.352 0.392 -0.090 0.534 sum -16.870 7.104 2.799 18.518 Atomic orbital electron populations 1.21397 0.92320 1.02148 1.02129 1.22379 0.95090 0.95153 1.01677 0.86548 1.23112 1.03166 1.01430 0.90954 1.22320 0.97899 1.05133 0.95828 0.85977 1.19679 0.84687 0.84854 0.78405 1.90684 1.68854 1.21236 1.61699 1.46048 1.24935 1.13181 1.52951 1.21481 0.84338 0.98659 0.96149 1.22384 0.99396 0.96565 1.00240 1.21034 0.92786 0.89396 0.95203 1.44046 1.53389 1.27148 1.09070 1.21082 0.96092 0.99120 0.85790 1.18789 1.09518 0.89869 1.21964 0.90427 1.25473 0.96598 0.97404 0.96892 1.69881 1.30652 1.37407 1.15999 0.86952 0.77294 0.86414 0.78793 1.21168 1.22785 1.19437 0.92364 0.91744 0.91994 0.87800 0.88226 0.76455 0.91890 0.91626 0.90524 0.92226 0.94133 0.92717 0.97536 0.93646 0.95494 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.19 37.16 0.38 -0.52 16 2 C -0.12 -1.23 5.92 -90.58 -0.54 -1.77 16 3 H 0.12 1.36 7.67 -51.93 -0.40 0.96 16 4 C -0.15 -1.41 9.88 -26.70 -0.26 -1.68 16 5 C -0.19 -2.04 5.91 -91.78 -0.54 -2.58 16 6 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 7 C 0.54 7.91 7.61 -10.98 -0.08 7.83 16 8 O -0.55 -10.18 16.26 5.55 0.09 -10.09 16 9 N -0.72 -10.09 5.56 -60.30 -0.33 -10.42 16 10 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 11 C -0.15 -2.60 5.65 -26.73 -0.15 -2.75 16 12 C 0.14 3.04 4.53 -4.04 -0.02 3.02 16 13 N -0.61 -14.62 2.47 -181.12 -0.45 -15.06 16 14 C 0.12 2.48 10.70 59.85 0.64 3.12 16 15 C -0.27 -7.63 9.88 -15.06 -0.15 -7.78 16 16 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 17 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 18 N -0.90 -27.33 13.97 55.49 0.78 -26.56 16 19 Si 0.88 22.44 25.10 -169.99 -4.27 18.17 16 20 H -0.28 -7.08 6.68 56.52 0.38 -6.70 16 21 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.78 8.07 -51.93 -0.42 0.37 16 34 H 0.05 1.30 3.38 -51.93 -0.18 1.12 16 35 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.04 0.88 8.00 -51.93 -0.42 0.47 16 37 H 0.03 0.46 8.10 -51.94 -0.42 0.04 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -32.65 314.79 -6.67 -39.32 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.39 Total: 0.11 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.84 Total: -0.20 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.01 Total: -52.04 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.27 Total: 18.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.65 -6.67 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233489348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds