Wall clock time and date at job start Sun Mar 29 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.55401 * 2 1 4 4 C 1.52998 * 117.49976 * 145.68831 * 2 1 3 5 5 C 1.52996 * 117.50186 * 214.31208 * 2 1 3 6 6 H 1.09005 * 117.51947 * 145.02346 * 5 2 1 7 7 C 1.50703 * 117.49807 * 0.02562 * 5 2 1 8 8 O 1.21280 * 119.99676 * 359.97438 * 7 5 2 9 9 N 1.34774 * 120.00231 * 180.26224 * 7 5 2 10 10 C 1.46493 * 120.00123 * 179.72420 * 9 7 5 11 11 C 1.53006 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46935 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.47048 * 180.02562 * 12 11 10 14 14 C 1.46505 * 119.99698 * 270.00052 * 13 12 11 15 15 C 1.36929 * 120.00241 * 89.99235 * 13 12 11 16 16 H 1.08002 * 120.00115 * 22.35040 * 15 13 12 17 17 C 1.38807 * 120.00387 * 202.34120 * 15 13 12 18 18 N 1.31625 * 119.99992 * 11.36045 * 17 15 13 19 19 Si 1.86797 * 120.00382 * 191.35860 * 17 15 13 20 20 H 1.48499 * 109.47079 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47092 * 120.00044 * 19 17 15 22 22 H 1.48498 * 109.47387 * 240.00349 * 19 17 15 23 23 H 1.09002 * 109.47035 * 205.68946 * 1 2 3 24 24 H 1.08996 * 109.47739 * 325.68666 * 1 2 3 25 25 H 1.08997 * 109.46948 * 85.68993 * 1 2 3 26 26 H 1.08996 * 117.49904 * 0.02562 * 4 2 1 27 27 H 1.08998 * 117.49439 * 214.98208 * 4 2 1 28 28 H 0.97006 * 119.99802 * 359.72135 * 9 7 5 29 29 H 1.08996 * 109.47457 * 299.99363 * 10 9 7 30 30 H 1.08996 * 109.47651 * 60.00121 * 10 9 7 31 31 H 1.08995 * 109.47077 * 299.99682 * 11 10 9 32 32 H 1.08995 * 109.47189 * 60.00016 * 11 10 9 33 33 H 1.09004 * 109.46802 * 299.99489 * 12 11 10 34 34 H 1.08995 * 109.47209 * 59.99980 * 12 11 10 35 35 H 1.09000 * 109.47052 * 94.20607 * 14 13 12 36 36 H 1.09000 * 109.46839 * 214.21259 * 14 13 12 37 37 H 1.09005 * 109.46848 * 334.20259 * 14 13 12 38 38 H 0.96998 * 120.00412 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 3.1717 -0.8754 -1.2683 7 6 1.3721 -2.1402 -1.4614 8 8 0.1640 -2.0529 -1.4017 9 7 1.9417 -3.1522 -2.1455 10 6 1.1014 -4.1464 -2.8174 11 6 1.9905 -5.1776 -3.5154 12 6 1.1129 -6.2156 -4.2176 13 7 1.9642 -7.2033 -4.8855 14 6 2.3901 -6.9863 -6.2704 15 6 2.3621 -8.3292 -4.2153 16 1 1.7942 -8.6817 -3.3670 17 6 3.4951 -9.0177 -4.6263 18 7 4.3102 -8.4772 -5.5072 19 14 3.8633 -10.7112 -3.9293 20 1 2.8001 -11.0913 -2.9647 21 1 3.9061 -11.7026 -5.0341 22 1 5.1759 -10.6863 -3.2354 23 1 -0.3633 -0.9261 0.4455 24 1 -0.3634 0.8487 0.5793 25 1 -0.3633 0.0772 -1.0247 26 1 1.6113 -1.8587 1.2679 27 1 3.1715 -0.8750 1.2683 28 1 2.9080 -3.2221 -2.1931 29 1 0.4723 -4.6474 -2.0816 30 1 0.4719 -3.6506 -3.5562 31 1 2.6192 -4.6764 -4.2513 32 1 2.6203 -5.6735 -2.7769 33 1 0.4839 -6.7169 -3.4820 34 1 0.4834 -5.7194 -4.9562 35 1 3.3677 -6.5044 -6.2786 36 1 2.4530 -7.9448 -6.7856 37 1 1.6661 -6.3483 -6.7774 38 1 5.1022 -8.9581 -5.7942 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233489349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:41 Heat of formation + Delta-G solvation = -0.711883 kcal Electronic energy + Delta-G solvation = -16936.028172 eV Core-core repulsion = 14200.776044 eV Total energy + Delta-G solvation = -2735.252128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05112 -37.02942 -36.00958 -34.63498 -31.98573 -30.08363 -28.57216 -26.08721 -25.64707 -23.68312 -21.79510 -21.10764 -20.52982 -19.51510 -17.10579 -16.75080 -15.78662 -15.50306 -15.08203 -14.71040 -14.04526 -13.82826 -13.30114 -13.15891 -12.97233 -12.67945 -12.60001 -12.27840 -11.64508 -11.60620 -11.28831 -11.05127 -10.83939 -10.73110 -10.47193 -10.39322 -10.22517 -10.06623 -9.91260 -9.76520 -9.47550 -8.86827 -8.55578 -6.76689 -5.72834 -3.18540 2.55670 3.25660 3.37292 3.44488 3.46569 3.69012 4.47898 4.49935 4.67948 4.70217 5.03004 5.20813 5.28954 5.45182 5.51570 5.54341 5.64829 5.75357 5.86996 5.88435 5.96831 6.00262 6.14356 6.25735 6.42166 6.45242 6.67191 6.77292 6.83959 7.01933 7.39545 7.65708 7.73208 7.81359 8.34862 8.40320 9.24208 9.87558 10.36411 11.32367 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.003985 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.755103 B = 7024.997160 C = 7296.843020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.194 4.194 6 H 0.121 0.879 7 C 0.538 3.462 8 O -0.542 6.542 9 N -0.723 5.723 10 C 0.120 3.880 11 C -0.150 4.150 12 C 0.156 3.844 13 N -0.603 5.603 14 C 0.163 3.837 15 C -0.253 4.253 16 H 0.069 0.931 17 C 0.000 4.000 18 N -0.909 5.909 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.401 0.599 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.044 0.956 37 H -0.003 1.003 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 14.665 8.575 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 H 0.127 0.873 4 C -0.189 4.189 5 C -0.215 4.215 6 H 0.139 0.861 7 C 0.324 3.676 8 O -0.420 6.420 9 N -0.373 5.373 10 C -0.004 4.004 11 C -0.191 4.191 12 C 0.028 3.972 13 N -0.326 5.326 14 C 0.019 3.981 15 C -0.383 4.383 16 H 0.087 0.913 17 C -0.198 4.198 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.235 0.765 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.015 0.985 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.603 14.600 8.495 17.271 hybrid contribution 1.150 -0.971 0.227 1.522 sum -2.453 13.629 8.721 16.366 Atomic orbital electron populations 1.21357 0.91504 1.01327 1.02612 1.22356 0.96612 0.93448 1.01506 0.87308 1.23074 1.03004 1.01891 0.90980 1.22319 1.02119 1.01277 0.95808 0.86070 1.19660 0.88109 0.81359 0.78488 1.90683 1.14561 1.75137 1.61605 1.46154 1.10791 1.27240 1.53128 1.21496 0.93843 0.89087 0.95924 1.22545 0.99721 0.96662 1.00128 1.20719 0.92213 0.89462 0.94806 1.43996 1.58378 1.20305 1.09891 1.20802 0.95232 0.98506 0.83581 1.19288 1.05708 1.00736 1.12542 0.91302 1.25032 0.95744 0.99429 0.99586 1.70079 1.13576 1.36852 1.34990 0.86181 0.77790 0.84260 0.78314 1.20317 1.21632 1.21756 0.91724 0.93465 0.91355 0.88236 0.87936 0.76521 0.91886 0.92020 0.92208 0.91332 0.93646 0.94279 0.95461 0.93678 0.98498 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 8.43 37.16 0.31 -0.91 16 2 C -0.12 -1.16 6.41 -90.62 -0.58 -1.74 16 3 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.15 -1.39 9.88 -26.73 -0.26 -1.65 16 5 C -0.19 -2.03 6.19 -91.77 -0.57 -2.60 16 6 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 7 C 0.54 7.48 7.59 -10.98 -0.08 7.40 16 8 O -0.54 -9.14 13.10 5.56 0.07 -9.07 16 9 N -0.72 -9.80 5.56 -60.30 -0.33 -10.13 16 10 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 11 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 12 C 0.16 3.17 5.71 -4.04 -0.02 3.14 16 13 N -0.60 -15.20 2.93 -181.11 -0.53 -15.73 16 14 C 0.16 4.05 9.01 59.85 0.54 4.59 16 15 C -0.25 -6.95 9.67 -15.06 -0.15 -7.10 16 16 H 0.07 1.86 7.84 -52.49 -0.41 1.44 16 17 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 18 N -0.91 -26.40 10.59 55.49 0.59 -25.82 16 19 Si 0.90 21.80 29.57 -169.99 -5.03 16.78 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H 0.06 0.81 7.02 -51.93 -0.36 0.45 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.86 7.26 -51.93 -0.38 0.49 16 26 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.40 4.68 8.47 -40.82 -0.35 4.33 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 34 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 35 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 36 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 37 H 0.00 -0.08 7.85 -51.93 -0.41 -0.48 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -31.06 312.84 -8.02 -39.08 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.42 Total: 0.13 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.08 Total: 0.05 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.28 Total: -51.68 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.06 -8.02 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233489349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.369 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds