Wall clock time and date at job start Sun Mar 29 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21275 * 120.00517 * 2 1 4 4 N 1.34783 * 119.99773 * 180.02562 * 2 1 3 5 5 C 1.46931 * 120.62769 * 4.87439 * 4 2 1 6 6 C 1.53196 * 108.77384 * 233.58722 * 5 4 2 7 7 C 1.53033 * 109.31383 * 305.37115 * 6 5 4 8 8 C 1.53075 * 109.66084 * 61.30110 * 7 6 5 9 9 H 1.08997 * 109.38903 * 58.72364 * 8 7 6 10 10 C 1.53004 * 109.62147 * 178.83195 * 8 7 6 11 11 C 1.46924 * 120.62946 * 184.85927 * 4 2 1 12 12 H 1.09000 * 109.58210 * 246.33491 * 11 4 2 13 13 C 1.52995 * 109.58918 * 6.62061 * 11 4 2 14 14 N 1.46501 * 109.47284 * 287.69028 * 13 11 4 15 15 C 1.36935 * 119.99922 * 175.29271 * 14 13 11 16 16 H 1.07994 * 120.00315 * 359.72399 * 15 14 13 17 17 C 1.38810 * 119.99706 * 179.72011 * 15 14 13 18 18 N 1.31621 * 120.00101 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00082 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46857 * 89.99852 * 19 17 15 21 21 H 1.48500 * 109.46983 * 209.99774 * 19 17 15 22 22 H 1.48494 * 109.47130 * 329.99607 * 19 17 15 23 23 H 1.08996 * 109.47288 * 174.65901 * 1 2 3 24 24 H 1.08991 * 109.47209 * 294.66680 * 1 2 3 25 25 H 1.09003 * 109.47015 * 54.66012 * 1 2 3 26 26 H 1.08992 * 109.58864 * 353.37959 * 5 4 2 27 27 H 1.09001 * 109.58265 * 113.80850 * 5 4 2 28 28 H 1.09003 * 109.49257 * 65.32119 * 6 5 4 29 29 H 1.09003 * 109.49379 * 185.37954 * 6 5 4 30 30 H 1.09007 * 109.45721 * 181.38678 * 7 6 5 31 31 H 1.09000 * 109.46012 * 301.35257 * 7 6 5 32 32 H 1.08990 * 109.46911 * 179.89413 * 10 8 7 33 33 H 1.09004 * 109.46734 * 299.88687 * 10 8 7 34 34 H 1.08995 * 109.47394 * 59.88493 * 10 8 7 35 35 H 1.08993 * 109.47336 * 167.68589 * 13 11 4 36 36 H 1.09005 * 109.46826 * 47.68877 * 13 11 4 37 37 H 0.97004 * 119.99853 * 355.01582 * 14 13 11 38 38 H 0.96997 * 119.99983 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4641 -2.4454 -0.1085 6 6 1.8866 -3.3475 1.0553 7 6 3.4111 -3.4805 1.0650 8 6 4.0471 -2.1028 1.2663 9 1 3.6960 -1.6760 2.2058 10 6 5.5704 -2.2408 1.3050 11 6 3.6461 -1.1858 0.1066 12 1 4.0755 -1.5619 -0.8220 13 6 4.1589 0.2310 0.3720 14 7 4.0258 1.0347 -0.8457 15 6 4.3325 2.3690 -0.8222 16 1 4.6683 2.8299 0.0949 17 6 4.2118 3.1292 -1.9774 18 7 4.5071 4.4117 -1.9551 19 14 3.6304 2.3321 -3.5637 20 1 2.1505 2.4203 -3.6484 21 1 4.2355 3.0367 -4.7224 22 1 4.0431 0.9058 -3.5811 23 1 -0.3634 -1.0232 -0.0957 24 1 -0.3633 0.4288 0.9338 25 1 -0.3633 0.5944 -0.8383 26 1 0.3899 -2.2670 -0.0614 27 1 1.7156 -2.9265 -1.0537 28 1 1.5538 -2.9079 1.9956 29 1 1.4355 -4.3324 0.9344 30 1 3.7127 -4.1419 1.8774 31 1 3.7453 -3.8970 0.1147 32 1 6.0206 -1.2584 1.4465 33 1 5.8552 -2.8933 2.1303 34 1 5.9204 -2.6691 0.3658 35 1 5.2074 0.1886 0.6665 36 1 3.5747 0.6848 1.1726 37 1 3.7242 0.6207 -1.6694 38 1 4.4225 4.9430 -2.7622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268179494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:46 Heat of formation + Delta-G solvation = 16.699979 kcal Electronic energy + Delta-G solvation = -18752.646852 eV Core-core repulsion = 16018.149760 eV Total energy + Delta-G solvation = -2734.497093 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21256 -37.20724 -34.85673 -33.45408 -32.09156 -30.59820 -29.46801 -26.79335 -26.03600 -23.81902 -22.13652 -20.99775 -20.20178 -18.73775 -17.29716 -16.37595 -15.77427 -15.14592 -14.67043 -14.44818 -13.98851 -13.70644 -13.28809 -13.16144 -12.94438 -12.71359 -12.41828 -12.17632 -12.02627 -11.71602 -11.55176 -11.47218 -11.06440 -11.00733 -10.70351 -10.60716 -10.55771 -10.13377 -9.84339 -9.32798 -8.63469 -8.38895 -8.06840 -6.70902 -5.47990 -2.73759 3.32230 3.38137 3.52357 3.56611 3.59458 4.65755 4.75438 4.80208 4.84541 4.97125 5.09023 5.24038 5.30781 5.48325 5.56752 5.65178 5.66013 5.71197 5.77272 5.81476 5.83602 5.86700 5.91239 6.05108 6.06520 6.15904 6.23905 6.33020 6.46506 6.64179 6.90523 7.20842 7.94015 8.26897 8.70067 8.94475 9.51199 10.24628 10.46072 11.72573 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.008903 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.878083 B = 3144.216398 C = 3637.992429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.463 3.537 3 O -0.445 6.445 4 N -0.620 5.620 5 C 0.105 3.895 6 C -0.134 4.134 7 C -0.113 4.113 8 C -0.098 4.098 9 H 0.073 0.927 10 C -0.147 4.147 11 C 0.142 3.858 12 H 0.064 0.936 13 C 0.168 3.832 14 N -0.722 5.722 15 C -0.197 4.197 16 H 0.084 0.916 17 C -0.009 4.009 18 N -0.948 5.948 19 Si 0.885 3.115 20 H -0.290 1.290 21 H -0.296 1.296 22 H -0.284 1.284 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.023 0.977 36 H 0.045 0.955 37 H 0.354 0.646 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -19.677 6.422 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.249 3.751 3 O -0.313 6.313 4 N -0.358 5.358 5 C -0.019 4.019 6 C -0.173 4.173 7 C -0.151 4.151 8 C -0.118 4.118 9 H 0.092 0.908 10 C -0.205 4.205 11 C 0.039 3.961 12 H 0.082 0.918 13 C 0.040 3.960 14 N -0.366 5.366 15 C -0.327 4.327 16 H 0.102 0.898 17 C -0.202 4.202 18 N -0.599 5.599 19 Si 0.717 3.283 20 H -0.218 1.218 21 H -0.223 1.223 22 H -0.211 1.211 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.187 0.813 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.290 -18.817 6.501 20.878 hybrid contribution -0.658 -0.654 -1.282 1.582 sum -6.948 -19.471 5.220 21.322 Atomic orbital electron populations 1.22049 0.93880 1.03136 1.04534 1.20812 0.89981 0.84488 0.79813 1.91314 1.67138 1.30267 1.42621 1.48090 1.06407 1.05544 1.75794 1.21761 0.97352 0.84742 0.98019 1.21921 0.96621 0.99483 0.99238 1.21575 0.94817 0.96832 1.01835 1.21464 0.96002 0.95201 0.99158 0.90849 1.21856 0.94596 1.02558 1.01476 1.21525 0.79567 0.97853 0.97163 0.91830 1.20838 0.96272 0.86874 0.91972 1.42522 1.80358 1.07394 1.06334 1.18961 1.33476 0.83584 0.96712 0.89780 1.24528 1.03001 0.95403 0.97235 1.69697 1.57342 1.05339 1.27549 0.86511 0.78482 0.78141 0.85144 1.21751 1.22325 1.21087 0.91027 0.89650 0.89598 0.89437 0.92128 0.91579 0.91233 0.91953 0.91982 0.91407 0.92839 0.92671 0.95999 0.93719 0.81334 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 10.12 36.00 0.36 -1.98 16 2 C 0.46 8.40 7.53 -10.98 -0.08 8.32 16 3 O -0.45 -10.70 10.47 5.56 0.06 -10.64 16 4 N -0.62 -9.52 2.97 -165.22 -0.49 -10.01 16 5 C 0.10 1.12 6.36 -3.71 -0.02 1.10 16 6 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 7 C -0.11 -1.12 5.17 -26.68 -0.14 -1.26 16 8 C -0.10 -1.24 2.34 -90.48 -0.21 -1.45 16 9 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.15 -1.74 8.99 37.16 0.33 -1.40 16 11 C 0.14 2.33 2.37 -67.60 -0.16 2.17 16 12 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 13 C 0.17 3.57 4.84 -4.04 -0.02 3.55 16 14 N -0.72 -18.87 3.04 -59.91 -0.18 -19.05 16 15 C -0.20 -6.07 9.65 -15.06 -0.15 -6.22 16 16 H 0.08 2.79 8.06 -52.49 -0.42 2.37 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.95 -32.07 13.97 55.49 0.78 -31.29 16 19 Si 0.88 24.39 27.74 -169.99 -4.71 19.67 16 20 H -0.29 -8.02 7.11 56.52 0.40 -7.62 16 21 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.28 -7.42 6.52 56.52 0.37 -7.05 16 23 H 0.07 0.71 5.10 -51.93 -0.26 0.44 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 0.77 5.04 -51.93 -0.26 0.51 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.90 6.38 -51.93 -0.33 0.57 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.47 6.16 -51.93 -0.32 0.15 16 36 H 0.05 1.05 6.43 -51.93 -0.33 0.71 16 37 H 0.35 9.29 5.46 -40.82 -0.22 9.06 16 38 H 0.25 8.18 8.31 -40.82 -0.34 7.84 16 LS Contribution 288.36 15.07 4.35 4.35 Total: -1.00 -36.45 288.36 -6.53 -42.97 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.98 Total: 2.93 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.34 Total: 1.08 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.10 Total: -60.36 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.06 Total: -10.64 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -4.71 Total: 19.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.45 -6.53 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268179494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.672 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds