Wall clock time and date at job start Sun Mar 29 2020 22:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21275 * 120.00517 * 2 1 4 4 N 1.34783 * 119.99773 * 180.02562 * 2 1 3 5 5 C 1.46931 * 120.62769 * 4.87439 * 4 2 1 6 6 C 1.53196 * 108.77384 * 233.58722 * 5 4 2 7 7 C 1.53033 * 109.31383 * 305.37115 * 6 5 4 8 8 C 1.53075 * 109.66084 * 61.30110 * 7 6 5 9 9 H 1.08997 * 109.38903 * 58.72364 * 8 7 6 10 10 C 1.53004 * 109.62147 * 178.83195 * 8 7 6 11 11 C 1.46924 * 120.62946 * 184.85927 * 4 2 1 12 12 H 1.09000 * 109.58210 * 246.33491 * 11 4 2 13 13 C 1.52995 * 109.58918 * 6.62061 * 11 4 2 14 14 N 1.46501 * 109.47284 * 287.69028 * 13 11 4 15 15 C 1.36935 * 119.99922 * 175.29271 * 14 13 11 16 16 H 1.07994 * 120.00315 * 359.72399 * 15 14 13 17 17 C 1.38810 * 119.99706 * 179.72011 * 15 14 13 18 18 N 1.31621 * 120.00101 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 120.00082 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.46857 * 89.99852 * 19 17 15 21 21 H 1.48500 * 109.46983 * 209.99774 * 19 17 15 22 22 H 1.48494 * 109.47130 * 329.99607 * 19 17 15 23 23 H 1.08996 * 109.47288 * 174.65901 * 1 2 3 24 24 H 1.08991 * 109.47209 * 294.66680 * 1 2 3 25 25 H 1.09003 * 109.47015 * 54.66012 * 1 2 3 26 26 H 1.08992 * 109.58864 * 353.37959 * 5 4 2 27 27 H 1.09001 * 109.58265 * 113.80850 * 5 4 2 28 28 H 1.09003 * 109.49257 * 65.32119 * 6 5 4 29 29 H 1.09003 * 109.49379 * 185.37954 * 6 5 4 30 30 H 1.09007 * 109.45721 * 181.38678 * 7 6 5 31 31 H 1.09000 * 109.46012 * 301.35257 * 7 6 5 32 32 H 1.08990 * 109.46911 * 179.89413 * 10 8 7 33 33 H 1.09004 * 109.46734 * 299.88687 * 10 8 7 34 34 H 1.08995 * 109.47394 * 59.88493 * 10 8 7 35 35 H 1.08993 * 109.47336 * 167.68589 * 13 11 4 36 36 H 1.09005 * 109.46826 * 47.68877 * 13 11 4 37 37 H 0.97004 * 119.99853 * 355.01582 * 14 13 11 38 38 H 0.96997 * 119.99983 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4641 -2.4454 -0.1085 6 6 1.8866 -3.3475 1.0553 7 6 3.4111 -3.4805 1.0650 8 6 4.0471 -2.1028 1.2663 9 1 3.6960 -1.6760 2.2058 10 6 5.5704 -2.2408 1.3050 11 6 3.6461 -1.1858 0.1066 12 1 4.0755 -1.5619 -0.8220 13 6 4.1589 0.2310 0.3720 14 7 4.0258 1.0347 -0.8457 15 6 4.3325 2.3690 -0.8222 16 1 4.6683 2.8299 0.0949 17 6 4.2118 3.1292 -1.9774 18 7 4.5071 4.4117 -1.9551 19 14 3.6304 2.3321 -3.5637 20 1 2.1505 2.4203 -3.6484 21 1 4.2355 3.0367 -4.7224 22 1 4.0431 0.9058 -3.5811 23 1 -0.3634 -1.0232 -0.0957 24 1 -0.3633 0.4288 0.9338 25 1 -0.3633 0.5944 -0.8383 26 1 0.3899 -2.2670 -0.0614 27 1 1.7156 -2.9265 -1.0537 28 1 1.5538 -2.9079 1.9956 29 1 1.4355 -4.3324 0.9344 30 1 3.7127 -4.1419 1.8774 31 1 3.7453 -3.8970 0.1147 32 1 6.0206 -1.2584 1.4465 33 1 5.8552 -2.8933 2.1303 34 1 5.9204 -2.6691 0.3658 35 1 5.2074 0.1886 0.6665 36 1 3.5747 0.6848 1.1726 37 1 3.7242 0.6207 -1.6694 38 1 4.4225 4.9430 -2.7622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268179494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:45 Heat of formation + Delta-G solvation = -9.446325 kcal Electronic energy + Delta-G solvation = -18753.780641 eV Core-core repulsion = 16018.149760 eV Total energy + Delta-G solvation = -2735.630882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50023 -38.45090 -36.63840 -34.82951 -33.74911 -32.31611 -30.74362 -28.24108 -27.11577 -25.38668 -23.78135 -22.37023 -21.26157 -20.20548 -19.30368 -17.68151 -17.00397 -16.70943 -16.18333 -15.91152 -15.43846 -14.87753 -14.75229 -14.63659 -14.37771 -14.08300 -13.83073 -13.54555 -13.14418 -13.12652 -13.00932 -12.79652 -12.73825 -12.30875 -12.15079 -11.90695 -11.80320 -11.66205 -11.45715 -11.11090 -10.88993 -9.91215 -9.44389 -8.86968 -7.93454 -5.15550 1.28006 1.35441 1.41658 1.96728 2.20797 2.52584 3.37853 3.60122 3.68874 3.88559 4.01755 4.09736 4.20672 4.26704 4.32185 4.40289 4.55664 4.65159 4.73683 4.79455 4.82549 4.88670 4.94601 4.98513 5.12956 5.16638 5.25665 5.26539 5.30432 5.41671 5.54969 5.79306 5.84373 6.29185 6.69600 7.17723 7.60164 7.96422 8.15826 9.30825 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.008903 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.878083 B = 3144.216398 C = 3637.992429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.456 3.544 3 O -0.524 6.524 4 N -0.617 5.617 5 C 0.096 3.904 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.091 4.091 9 H 0.063 0.937 10 C -0.146 4.146 11 C 0.147 3.853 12 H 0.062 0.938 13 C 0.169 3.831 14 N -0.719 5.719 15 C -0.182 4.182 16 H 0.041 0.959 17 C -0.082 4.082 18 N -0.998 5.998 19 Si 0.961 3.039 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.260 1.260 23 H 0.113 0.887 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.356 0.644 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 -23.980 5.977 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.244 3.756 3 O -0.398 6.398 4 N -0.354 5.354 5 C -0.025 4.025 6 C -0.167 4.167 7 C -0.146 4.146 8 C -0.111 4.111 9 H 0.082 0.918 10 C -0.204 4.204 11 C 0.043 3.957 12 H 0.080 0.920 13 C 0.043 3.957 14 N -0.362 5.362 15 C -0.314 4.314 16 H 0.059 0.941 17 C -0.271 4.271 18 N -0.653 5.653 19 Si 0.790 3.210 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.185 1.185 23 H 0.132 0.868 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.188 0.812 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.926 -23.239 6.087 25.297 hybrid contribution -0.164 0.634 -0.986 1.184 sum -8.089 -22.605 5.101 24.545 Atomic orbital electron populations 1.22019 0.90027 1.05841 1.04752 1.21715 0.91998 0.84098 0.77835 1.91282 1.69053 1.32842 1.46599 1.48267 1.06085 1.06886 1.74149 1.22161 0.98215 0.82587 0.99564 1.21916 0.95952 1.00644 0.98155 1.21575 0.95326 0.94671 1.03049 1.21418 0.96706 0.96243 0.96742 0.91816 1.21845 0.93967 1.01748 1.02797 1.21393 0.80588 0.94939 0.98750 0.91973 1.20867 0.95868 0.89391 0.89552 1.42423 1.80077 1.05816 1.07921 1.18879 1.31748 0.85776 0.95004 0.94060 1.25348 1.04356 0.96054 1.01318 1.69897 1.59610 1.07209 1.28553 0.85292 0.77574 0.78252 0.79872 1.21656 1.22108 1.18507 0.86833 0.88775 0.90229 0.87104 0.90880 0.91864 0.87903 0.89849 0.91306 0.93879 0.90369 0.92121 0.96234 0.96328 0.81207 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 10.12 71.23 0.72 -3.33 16 2 C 0.46 16.14 7.53 87.66 0.66 16.80 16 3 O -0.52 -25.94 10.47 -3.02 -0.03 -25.97 16 4 N -0.62 -17.63 2.97 -795.03 -2.36 -19.99 16 5 C 0.10 1.61 6.36 86.36 0.55 2.16 16 6 C -0.13 -1.66 6.08 30.67 0.19 -1.48 16 7 C -0.11 -1.67 5.17 30.63 0.16 -1.51 16 8 C -0.09 -2.11 2.34 -10.70 -0.03 -2.13 16 9 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 10 C -0.15 -3.20 8.99 71.98 0.65 -2.55 16 11 C 0.15 4.66 2.37 44.97 0.11 4.77 16 12 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 13 C 0.17 7.46 4.84 86.38 0.42 7.88 16 14 N -0.72 -38.60 3.04 -343.47 -1.04 -39.64 16 15 C -0.18 -11.79 9.65 84.03 0.81 -10.98 16 16 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 17 C -0.08 -5.39 5.50 84.86 0.47 -4.93 16 18 N -1.00 -70.37 13.97 21.65 0.30 -70.07 16 19 Si 0.96 51.58 27.74 68.60 1.90 53.48 16 20 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 21 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 22 H -0.26 -12.71 6.52 99.48 0.65 -12.06 16 23 H 0.11 1.71 5.10 -2.39 -0.01 1.70 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.11 1.34 5.04 -2.39 -0.01 1.33 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 1.14 6.38 -2.39 -0.02 1.13 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.02 0.88 6.16 -2.39 -0.01 0.87 16 36 H 0.02 0.93 6.43 -2.38 -0.02 0.91 16 37 H 0.36 18.61 5.46 -92.71 -0.51 18.10 16 38 H 0.25 16.87 8.31 -92.71 -0.77 16.10 16 Total: -1.00 -85.00 288.36 3.94 -81.06 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.48 Total: 16.44 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 4.70 Total: 4.70 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -3.11 Total: -129.71 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.03 Total: -25.97 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 1.90 Total: 53.48 kcal Total: -85.00 3.94 -81.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268179494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.610 kcal (2) G-P(sol) polarization free energy of solvation -84.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds