Wall clock time and date at job start Sun Mar 29 2020 22:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99825 * 2 1 4 4 N 1.34773 * 120.00026 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.62936 * 354.86852 * 4 2 1 6 6 C 1.53200 * 108.89040 * 126.34119 * 5 4 2 7 7 C 1.53351 * 109.14881 * 54.57933 * 6 5 4 8 8 C 1.53045 * 109.60687 * 298.71019 * 7 6 5 9 9 H 1.08993 * 109.52188 * 181.34196 * 8 7 6 10 10 C 1.52999 * 109.49441 * 301.42299 * 8 7 6 11 11 C 1.46920 * 120.63222 * 174.89270 * 4 2 1 12 12 H 1.08994 * 109.58911 * 113.79915 * 11 4 2 13 13 C 1.53002 * 109.58478 * 353.51466 * 11 4 2 14 14 N 1.46497 * 109.47131 * 73.13885 * 13 11 4 15 15 C 1.36932 * 120.00294 * 174.76957 * 14 13 11 16 16 H 1.08001 * 119.99874 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00439 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47456 * 90.00066 * 19 17 15 21 21 H 1.48506 * 109.47019 * 209.99811 * 19 17 15 22 22 H 1.48496 * 109.47205 * 329.99684 * 19 17 15 23 23 H 1.08998 * 109.47508 * 239.99954 * 1 2 3 24 24 H 1.09001 * 109.47250 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47328 * 119.99742 * 1 2 3 26 26 H 1.08998 * 109.58730 * 246.20122 * 5 4 2 27 27 H 1.09004 * 109.58630 * 6.48700 * 5 4 2 28 28 H 1.09001 * 109.49696 * 174.65914 * 6 5 4 29 29 H 1.09001 * 109.49716 * 294.75638 * 6 5 4 30 30 H 1.08995 * 109.41722 * 178.67432 * 7 6 5 31 31 H 1.09003 * 109.42331 * 58.74788 * 7 6 5 32 32 H 1.09001 * 109.46720 * 179.84162 * 10 8 7 33 33 H 1.09000 * 109.47291 * 299.83504 * 10 8 7 34 34 H 1.08992 * 109.47463 * 59.84322 * 10 8 7 35 35 H 1.09000 * 109.47045 * 193.13580 * 13 11 4 36 36 H 1.08995 * 109.47225 * 313.13551 * 13 11 4 37 37 H 0.96996 * 119.99676 * 354.77445 * 14 13 11 38 38 H 0.97003 * 120.00126 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4647 -2.4450 0.1142 6 6 1.8795 -3.3513 -1.0493 7 6 3.4072 -3.4828 -1.0645 8 6 4.0393 -2.1047 -1.2730 9 1 5.1243 -2.2030 -1.3074 10 6 3.5386 -1.5072 -2.5895 11 6 3.6456 -1.1859 -0.1120 12 1 4.0786 -1.5623 0.8148 13 6 4.1577 0.2309 -0.3791 14 7 4.0475 1.0287 0.8447 15 6 4.5462 2.3036 0.8781 16 1 5.0204 2.7211 0.0022 17 6 4.4423 3.0594 2.0378 18 7 3.8649 2.5504 3.1055 19 14 5.1220 4.7987 2.0832 20 1 4.0659 5.7540 1.6623 21 1 5.5607 5.1229 3.4644 22 1 6.2798 4.9020 1.1591 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 1.7197 -2.9240 1.0594 27 1 0.3901 -2.2665 0.0732 28 1 1.4275 -4.3351 -0.9231 29 1 1.5430 -2.9137 -1.9892 30 1 3.7058 -4.1458 -1.8764 31 1 3.7449 -3.8972 -0.1145 32 1 3.9869 -0.5245 -2.7362 33 1 3.8189 -2.1612 -3.4152 34 1 2.4536 -1.4101 -2.5551 35 1 5.2010 0.1873 -0.6916 36 1 3.5612 0.6903 -1.1672 37 1 3.6214 0.6538 1.6312 38 1 3.7926 3.0783 3.9160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268179495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:47 Heat of formation + Delta-G solvation = 8.492254 kcal Electronic energy + Delta-G solvation = -18790.559945 eV Core-core repulsion = 16055.706939 eV Total energy + Delta-G solvation = -2734.853006 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19901 -37.14247 -34.52969 -33.16593 -31.99714 -30.13155 -29.14193 -26.73405 -25.83554 -24.00373 -22.60937 -21.13222 -19.76967 -18.07730 -16.90946 -16.06942 -15.55846 -15.08214 -14.80172 -14.26735 -14.05597 -13.62895 -13.21385 -13.01086 -12.81531 -12.43431 -12.33432 -12.17850 -11.88870 -11.64196 -11.38464 -11.23724 -10.92607 -10.83815 -10.63913 -10.56029 -10.28350 -10.12577 -9.76731 -9.42612 -8.59014 -8.27883 -7.91202 -6.41496 -5.46935 -2.66111 3.46446 3.54144 3.60445 3.64003 3.65396 4.78003 4.80667 4.87146 4.96089 5.15889 5.26883 5.36104 5.45999 5.58375 5.61075 5.72300 5.76604 5.82863 5.86075 5.89407 5.94994 5.99906 6.07047 6.18037 6.22755 6.25486 6.37784 6.53991 6.63154 6.79347 7.01980 7.37544 7.93650 8.09466 8.71639 9.08800 9.82800 10.45377 10.79725 11.77515 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.007496 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.781376 B = 3734.378608 C = 4095.829282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.468 3.532 3 O -0.448 6.448 4 N -0.615 5.615 5 C 0.112 3.888 6 C -0.136 4.136 7 C -0.112 4.112 8 C -0.100 4.100 9 H 0.078 0.922 10 C -0.143 4.143 11 C 0.146 3.854 12 H 0.066 0.934 13 C 0.164 3.836 14 N -0.696 5.696 15 C -0.204 4.204 16 H 0.063 0.937 17 C -0.024 4.024 18 N -0.940 5.940 19 Si 0.901 3.099 20 H -0.294 1.294 21 H -0.295 1.295 22 H -0.285 1.285 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.013 0.987 36 H 0.037 0.963 37 H 0.379 0.621 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 -14.880 -9.305 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.253 3.747 3 O -0.316 6.316 4 N -0.354 5.354 5 C -0.012 4.012 6 C -0.175 4.175 7 C -0.150 4.150 8 C -0.120 4.120 9 H 0.096 0.904 10 C -0.200 4.200 11 C 0.042 3.958 12 H 0.084 0.916 13 C 0.037 3.963 14 N -0.339 5.339 15 C -0.336 4.336 16 H 0.081 0.919 17 C -0.219 4.219 18 N -0.591 5.591 19 Si 0.734 3.266 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.211 1.211 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.055 0.945 37 H 0.213 0.787 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.662 -14.077 -9.358 17.826 hybrid contribution 0.024 0.694 0.418 0.810 sum -5.638 -13.383 -8.940 17.053 Atomic orbital electron populations 1.21934 0.94021 1.04421 1.02464 1.20694 0.89812 0.84350 0.79829 1.91246 1.67415 1.30407 1.42558 1.47921 1.06361 1.05360 1.75732 1.21572 0.96833 0.84883 0.97910 1.22020 0.96621 0.99385 0.99441 1.21576 0.95119 0.96703 1.01600 1.21466 1.00165 0.94625 0.95729 0.90407 1.21837 1.01552 1.00877 0.95780 1.21445 0.79746 0.97757 0.96840 0.91639 1.20842 0.95511 0.87467 0.92499 1.42198 1.69053 1.13103 1.09534 1.19162 1.27505 0.90616 0.96362 0.91877 1.24593 1.02740 0.98038 0.96483 1.69662 1.50619 1.36539 1.02321 0.86244 0.78299 0.85820 0.76277 1.22246 1.22197 1.21143 0.90669 0.89751 0.90852 0.92119 0.90231 0.91432 0.91312 0.92138 0.91969 0.92100 0.93496 0.92530 0.96983 0.94528 0.78704 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 8.67 36.01 0.31 -2.04 16 2 C 0.47 8.79 7.42 -10.99 -0.08 8.71 16 3 O -0.45 -11.09 10.81 5.55 0.06 -11.03 16 4 N -0.62 -9.83 2.41 -165.22 -0.40 -10.23 16 5 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 6 C -0.14 -1.32 5.77 -26.45 -0.15 -1.47 16 7 C -0.11 -1.19 5.43 -26.53 -0.14 -1.33 16 8 C -0.10 -1.33 2.78 -90.50 -0.25 -1.58 16 9 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 10 C -0.14 -1.87 8.24 37.16 0.31 -1.56 16 11 C 0.15 2.52 2.60 -67.60 -0.18 2.35 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.16 3.65 3.95 -4.04 -0.02 3.63 16 14 N -0.70 -19.26 3.20 -59.91 -0.19 -19.45 16 15 C -0.20 -6.24 9.73 -15.06 -0.15 -6.39 16 16 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 18 N -0.94 -30.62 13.06 55.49 0.72 -29.90 16 19 Si 0.90 24.27 29.55 -169.99 -5.02 19.25 16 20 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 21 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 24 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 25 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.90 6.66 -51.93 -0.35 0.55 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 35 H 0.01 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.04 0.88 5.36 -51.93 -0.28 0.60 16 37 H 0.38 11.20 7.23 -40.82 -0.30 10.90 16 38 H 0.25 7.83 8.31 -40.82 -0.34 7.50 16 LS Contribution 289.26 15.07 4.36 4.36 Total: -1.00 -35.36 289.26 -6.96 -42.32 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.03 Total: 3.96 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.47 Total: 0.72 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.13 Total: -59.58 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.06 Total: -11.03 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.02 Total: 19.25 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.36 -6.96 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268179495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.813 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds