Wall clock time and date at job start Sun Mar 29 2020 22:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99825 * 2 1 4 4 N 1.34773 * 120.00026 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.62936 * 354.86852 * 4 2 1 6 6 C 1.53200 * 108.89040 * 126.34119 * 5 4 2 7 7 C 1.53351 * 109.14881 * 54.57933 * 6 5 4 8 8 C 1.53045 * 109.60687 * 298.71019 * 7 6 5 9 9 H 1.08993 * 109.52188 * 181.34196 * 8 7 6 10 10 C 1.52999 * 109.49441 * 301.42299 * 8 7 6 11 11 C 1.46920 * 120.63222 * 174.89270 * 4 2 1 12 12 H 1.08994 * 109.58911 * 113.79915 * 11 4 2 13 13 C 1.53002 * 109.58478 * 353.51466 * 11 4 2 14 14 N 1.46497 * 109.47131 * 73.13885 * 13 11 4 15 15 C 1.36932 * 120.00294 * 174.76957 * 14 13 11 16 16 H 1.08001 * 119.99874 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00439 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47456 * 90.00066 * 19 17 15 21 21 H 1.48506 * 109.47019 * 209.99811 * 19 17 15 22 22 H 1.48496 * 109.47205 * 329.99684 * 19 17 15 23 23 H 1.08998 * 109.47508 * 239.99954 * 1 2 3 24 24 H 1.09001 * 109.47250 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47328 * 119.99742 * 1 2 3 26 26 H 1.08998 * 109.58730 * 246.20122 * 5 4 2 27 27 H 1.09004 * 109.58630 * 6.48700 * 5 4 2 28 28 H 1.09001 * 109.49696 * 174.65914 * 6 5 4 29 29 H 1.09001 * 109.49716 * 294.75638 * 6 5 4 30 30 H 1.08995 * 109.41722 * 178.67432 * 7 6 5 31 31 H 1.09003 * 109.42331 * 58.74788 * 7 6 5 32 32 H 1.09001 * 109.46720 * 179.84162 * 10 8 7 33 33 H 1.09000 * 109.47291 * 299.83504 * 10 8 7 34 34 H 1.08992 * 109.47463 * 59.84322 * 10 8 7 35 35 H 1.09000 * 109.47045 * 193.13580 * 13 11 4 36 36 H 1.08995 * 109.47225 * 313.13551 * 13 11 4 37 37 H 0.96996 * 119.99676 * 354.77445 * 14 13 11 38 38 H 0.97003 * 120.00126 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4647 -2.4450 0.1142 6 6 1.8795 -3.3513 -1.0493 7 6 3.4072 -3.4828 -1.0645 8 6 4.0393 -2.1047 -1.2730 9 1 5.1243 -2.2030 -1.3074 10 6 3.5386 -1.5072 -2.5895 11 6 3.6456 -1.1859 -0.1120 12 1 4.0786 -1.5623 0.8148 13 6 4.1577 0.2309 -0.3791 14 7 4.0475 1.0287 0.8447 15 6 4.5462 2.3036 0.8781 16 1 5.0204 2.7211 0.0022 17 6 4.4423 3.0594 2.0378 18 7 3.8649 2.5504 3.1055 19 14 5.1220 4.7987 2.0832 20 1 4.0659 5.7540 1.6623 21 1 5.5607 5.1229 3.4644 22 1 6.2798 4.9020 1.1591 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 1.7197 -2.9240 1.0594 27 1 0.3901 -2.2665 0.0732 28 1 1.4275 -4.3351 -0.9231 29 1 1.5430 -2.9137 -1.9892 30 1 3.7058 -4.1458 -1.8764 31 1 3.7449 -3.8972 -0.1145 32 1 3.9869 -0.5245 -2.7362 33 1 3.8189 -2.1612 -3.4152 34 1 2.4536 -1.4101 -2.5551 35 1 5.2010 0.1873 -0.6916 36 1 3.5612 0.6903 -1.1672 37 1 3.6214 0.6538 1.6312 38 1 3.7926 3.0783 3.9160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268179495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:47 Heat of formation + Delta-G solvation = -15.758826 kcal Electronic energy + Delta-G solvation = -18791.611551 eV Core-core repulsion = 16055.706939 eV Total energy + Delta-G solvation = -2735.904612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53198 -38.46189 -36.40739 -34.55373 -33.64629 -31.80656 -30.48788 -28.07855 -27.19197 -25.59642 -24.23385 -22.58142 -20.95659 -19.58714 -18.78859 -17.48482 -16.92054 -16.75649 -16.13132 -15.74392 -15.31396 -15.14112 -14.92514 -14.50109 -14.05689 -13.95407 -13.77040 -13.31964 -13.23575 -12.94916 -12.85518 -12.77803 -12.55773 -12.31927 -12.08904 -12.00135 -11.82620 -11.61112 -11.23973 -11.17694 -10.83603 -9.83842 -9.32031 -8.62336 -7.83960 -5.02240 1.41661 1.46124 1.53404 2.05651 2.28854 2.61417 3.48096 3.72479 3.80631 3.94473 4.10124 4.18520 4.30263 4.39601 4.46563 4.54631 4.57882 4.67016 4.72563 4.81855 4.86941 4.91884 4.96414 5.04349 5.12818 5.15110 5.26922 5.31977 5.35181 5.38348 5.50689 5.60100 5.92740 6.37556 6.78077 7.42918 7.68156 8.25656 8.48192 9.41297 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.007496 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.781376 B = 3734.378608 C = 4095.829282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.459 3.541 3 O -0.525 6.525 4 N -0.610 5.610 5 C 0.102 3.898 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.094 4.094 9 H 0.079 0.921 10 C -0.138 4.138 11 C 0.149 3.851 12 H 0.050 0.950 13 C 0.169 3.831 14 N -0.703 5.703 15 C -0.211 4.211 16 H 0.060 0.940 17 C -0.089 4.089 18 N -0.976 5.976 19 Si 0.969 3.031 20 H -0.295 1.295 21 H -0.293 1.293 22 H -0.271 1.271 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.006 0.994 36 H 0.022 0.978 37 H 0.366 0.634 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 -17.129 -10.535 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.247 3.753 3 O -0.399 6.399 4 N -0.347 5.347 5 C -0.020 4.020 6 C -0.167 4.167 7 C -0.146 4.146 8 C -0.114 4.114 9 H 0.097 0.903 10 C -0.195 4.195 11 C 0.045 3.955 12 H 0.068 0.932 13 C 0.043 3.957 14 N -0.343 5.343 15 C -0.344 4.344 16 H 0.078 0.922 17 C -0.280 4.280 18 N -0.629 5.629 19 Si 0.799 3.201 20 H -0.223 1.223 21 H -0.219 1.219 22 H -0.196 1.196 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.040 0.960 37 H 0.197 0.803 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.620 -16.404 -10.635 20.640 hybrid contribution 0.280 1.295 0.733 1.514 sum -6.340 -15.109 -9.902 19.145 Atomic orbital electron populations 1.21875 0.90057 1.04477 1.05323 1.21630 0.91887 0.83964 0.77854 1.91208 1.69273 1.32921 1.46507 1.48053 1.05857 1.06660 1.74127 1.21969 0.97843 0.82871 0.99289 1.22007 0.95875 1.00445 0.98377 1.21576 0.95695 0.94625 1.02688 1.21442 1.00637 0.95514 0.93808 0.90296 1.21783 1.01173 0.99974 0.96550 1.21284 0.80916 0.95255 0.98032 0.93204 1.20853 0.94881 0.89829 0.90157 1.42292 1.68656 1.12715 1.10673 1.19513 1.26690 0.92041 0.96158 0.92207 1.25406 1.04048 1.02219 0.96287 1.69832 1.52449 1.37913 1.02708 0.85167 0.77820 0.80660 0.76405 1.22299 1.21929 1.19639 0.88370 0.91266 0.87044 0.91649 0.87721 0.88160 0.91084 0.89721 0.91791 0.94909 0.90723 0.92659 0.97679 0.96010 0.80274 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.67 71.24 0.62 -3.50 16 2 C 0.46 17.29 7.42 87.66 0.65 17.94 16 3 O -0.52 -27.15 10.81 -3.04 -0.03 -27.19 16 4 N -0.61 -18.92 2.41 -795.01 -1.92 -20.84 16 5 C 0.10 2.00 6.34 86.36 0.55 2.55 16 6 C -0.13 -1.90 5.77 30.78 0.18 -1.72 16 7 C -0.11 -1.88 5.43 30.73 0.17 -1.71 16 8 C -0.09 -2.36 2.78 -10.71 -0.03 -2.39 16 9 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 10 C -0.14 -3.37 8.24 71.98 0.59 -2.77 16 11 C 0.15 5.20 2.60 44.98 0.12 5.32 16 12 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 13 C 0.17 7.85 3.95 86.38 0.34 8.19 16 14 N -0.70 -40.73 3.20 -343.46 -1.10 -41.83 16 15 C -0.21 -13.39 9.73 84.04 0.82 -12.57 16 16 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 17 C -0.09 -5.70 5.50 84.86 0.47 -5.23 16 18 N -0.98 -65.60 13.06 21.65 0.28 -65.32 16 19 Si 0.97 51.29 29.55 68.60 2.03 53.32 16 20 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 21 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 22 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 23 H 0.10 2.12 7.73 -2.39 -0.02 2.10 16 24 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 25 H 0.11 2.04 7.90 -2.39 -0.02 2.02 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.55 5.93 -2.39 -0.01 1.54 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.07 6.34 -2.39 -0.02 1.06 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.03 0.97 6.66 -2.39 -0.02 0.95 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.36 5.97 -2.39 -0.01 1.34 16 35 H 0.01 0.26 8.09 -2.39 -0.02 0.24 16 36 H 0.02 1.11 5.36 -2.39 -0.01 1.09 16 37 H 0.37 22.67 7.23 -92.71 -0.67 22.00 16 38 H 0.24 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -81.31 289.26 4.10 -77.21 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.37 Total: 20.55 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 4.47 Total: 4.09 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -2.73 Total: -127.98 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.03 Total: -27.19 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.03 Total: 53.32 kcal Total: -81.31 4.10 -77.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268179495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.452 kcal (2) G-P(sol) polarization free energy of solvation -81.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds