Wall clock time and date at job start Sun Mar 29 2020 22:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46624 * 2 1 4 4 O 1.21283 * 120.00521 * 359.73045 * 3 2 1 5 5 N 1.34784 * 119.99774 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99971 * 359.72768 * 5 3 2 7 7 C 1.46499 * 119.99893 * 179.72962 * 5 3 2 8 8 H 1.08994 * 109.47156 * 359.97438 * 7 5 3 9 9 C 1.52993 * 109.47238 * 120.00062 * 7 5 3 10 10 N 1.46499 * 109.47293 * 304.99842 * 9 7 5 11 11 C 1.36939 * 120.00485 * 179.97438 * 10 9 7 12 12 H 1.08009 * 119.99448 * 0.02562 * 11 10 9 13 13 C 1.38807 * 120.00356 * 179.97438 * 11 10 9 14 14 N 1.31617 * 119.99816 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99915 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47416 * 60.00529 * 15 13 11 17 17 H 1.48507 * 109.46708 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47167 * 300.00045 * 15 13 11 19 19 C 1.53001 * 109.46682 * 239.99962 * 7 5 3 20 20 C 1.53000 * 117.49825 * 248.74899 * 19 7 5 21 21 C 1.52998 * 117.49818 * 180.08962 * 19 7 5 22 22 H 1.09001 * 109.46782 * 299.99104 * 1 2 3 23 23 H 1.08993 * 109.47555 * 59.99547 * 1 2 3 24 24 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46782 * 240.00896 * 2 1 3 26 26 H 1.08993 * 109.47555 * 120.00453 * 2 1 3 27 27 H 1.08999 * 109.47256 * 89.99766 * 6 5 3 28 28 H 1.08998 * 109.47416 * 209.99869 * 6 5 3 29 29 H 1.09008 * 109.47058 * 330.00468 * 6 5 3 30 30 H 1.09008 * 109.47366 * 64.99919 * 9 7 5 31 31 H 1.09004 * 109.47335 * 184.99304 * 9 7 5 32 32 H 0.97003 * 119.99958 * 359.97438 * 10 9 7 33 33 H 0.97003 * 120.00085 * 180.02562 * 14 13 11 34 34 H 1.08995 * 115.55390 * 34.41468 * 19 7 5 35 35 H 1.09002 * 117.49673 * 359.97438 * 20 19 7 36 36 H 1.08998 * 117.50059 * 145.02495 * 20 19 7 37 37 H 1.08997 * 117.50060 * 214.98085 * 21 19 7 38 38 H 1.09003 * 117.49489 * 359.97431 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2441 2.3427 -0.0049 5 7 3.3574 1.6672 -0.0005 6 6 4.3094 0.5537 0.0049 7 6 3.8456 3.0484 -0.0065 8 1 2.9978 3.7334 -0.0104 9 6 4.6950 3.2945 1.2419 10 7 3.9176 2.9550 2.4363 11 6 4.4752 3.0953 3.6791 12 1 5.4881 3.4567 3.7788 13 6 3.7384 2.7741 4.8108 14 7 2.5038 2.3342 4.6893 15 14 4.4989 2.9662 6.5061 16 1 4.8825 4.3849 6.7187 17 1 3.5132 2.5593 7.5397 18 1 5.7055 2.1065 6.6076 19 6 4.6961 3.2832 -1.2565 20 6 6.1986 3.4945 -1.0592 21 6 5.3036 4.6744 -1.4465 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.5460 0.2729 -1.0213 28 1 5.2217 0.8582 0.5178 29 1 3.8688 -0.2985 0.5224 30 1 5.5892 2.6724 1.2015 31 1 4.9846 4.3445 1.2832 32 1 3.0077 2.6308 2.3468 33 1 1.9888 2.1101 5.4801 34 1 4.3765 2.7472 -2.1501 35 1 6.5810 3.4668 -0.0388 36 1 6.8672 3.0981 -1.8232 37 1 5.3839 5.0537 -2.4652 38 1 5.0970 5.4226 -0.6812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277608321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:06 Heat of formation + Delta-G solvation = -19.794060 kcal Electronic energy + Delta-G solvation = -18143.463797 eV Core-core repulsion = 15407.384204 eV Total energy + Delta-G solvation = -2736.079593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19213 -39.04603 -36.40618 -35.73076 -33.76641 -32.92073 -29.77691 -27.67742 -26.42931 -24.88295 -23.94335 -23.09170 -20.90407 -19.83648 -19.06004 -18.17859 -17.53945 -16.84682 -16.54187 -16.07863 -15.60402 -15.09450 -14.83848 -14.73301 -14.29121 -13.96169 -13.57548 -13.33443 -13.07622 -13.01766 -12.81046 -12.69699 -12.52437 -12.36929 -12.24926 -12.05352 -11.97431 -11.77327 -11.36186 -10.98577 -10.93308 -10.59921 -9.52365 -9.02021 -7.94857 -5.25575 1.44315 1.48232 1.54445 1.72998 2.10240 2.53854 2.94227 3.37349 3.61833 3.74393 3.95645 4.08683 4.14646 4.22211 4.24832 4.26429 4.35497 4.44608 4.61631 4.70694 4.78606 4.83885 4.88507 4.96295 5.02182 5.05369 5.11117 5.15352 5.23536 5.32783 5.34638 5.45316 5.69240 6.24449 6.52497 7.28644 7.31289 8.06256 8.30375 9.27961 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.008987 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.689352 B = 3114.940911 C = 4310.740122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.133 4.133 3 C 0.499 3.501 4 O -0.595 6.595 5 N -0.598 5.598 6 C 0.081 3.919 7 C 0.166 3.834 8 H 0.062 0.938 9 C 0.146 3.854 10 N -0.741 5.741 11 C -0.247 4.247 12 H 0.078 0.922 13 C -0.076 4.076 14 N -0.968 5.968 15 Si 0.977 3.023 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.273 1.273 19 C -0.163 4.163 20 C -0.167 4.167 21 C -0.173 4.173 22 H 0.030 0.970 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.022 0.978 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -5.447 -14.618 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 C 0.290 3.710 4 O -0.476 6.476 5 N -0.329 5.329 6 C -0.061 4.061 7 C 0.061 3.939 8 H 0.080 0.920 9 C 0.019 3.981 10 N -0.384 5.384 11 C -0.379 4.379 12 H 0.096 0.904 13 C -0.268 4.268 14 N -0.619 5.619 15 Si 0.805 3.195 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.199 1.199 19 C -0.182 4.182 20 C -0.203 4.203 21 C -0.210 4.210 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.109 0.891 25 H 0.145 0.855 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.661 -4.942 -14.501 16.333 hybrid contribution -0.313 0.316 1.325 1.398 sum 5.348 -4.626 -13.176 14.954 Atomic orbital electron populations 1.21509 0.93525 1.02581 1.01444 1.21678 0.98187 0.91659 1.05738 1.21560 0.81901 0.93056 0.74515 1.90640 1.56189 1.48419 1.52390 1.47789 1.05963 1.07081 1.72052 1.21895 0.93002 0.88334 1.02868 1.20550 0.96071 0.83579 0.93653 0.91955 1.21251 0.94081 0.97202 0.85552 1.42520 1.15045 1.79379 1.01453 1.19604 0.97660 1.35833 0.84807 0.90439 1.25622 0.96756 1.02661 1.01745 1.69871 1.10626 1.52363 1.29026 0.85172 0.77137 0.77947 0.79230 1.20630 1.22292 1.19850 1.22402 0.95790 1.02081 0.97941 1.23208 0.91884 1.01794 1.03450 1.23046 1.03763 0.90802 1.03388 0.95102 0.92777 0.89146 0.85509 0.88457 0.89641 0.91588 0.90445 0.93962 0.95981 0.79753 0.94142 0.86550 0.88963 0.86364 0.86576 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.20 71.98 0.66 -3.01 16 2 C -0.13 -3.62 4.98 29.85 0.15 -3.47 16 3 C 0.50 18.71 7.38 87.65 0.65 19.36 16 4 O -0.60 -28.04 15.31 -3.04 -0.05 -28.08 16 5 N -0.60 -20.17 2.24 -822.60 -1.85 -22.02 16 6 C 0.08 2.04 9.61 127.77 1.23 3.27 16 7 C 0.17 5.99 2.59 44.99 0.12 6.11 16 8 H 0.06 2.75 6.90 -2.39 -0.02 2.73 16 9 C 0.15 6.03 4.14 86.38 0.36 6.38 16 10 N -0.74 -39.69 5.43 -343.45 -1.87 -41.56 16 11 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 12 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 13 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 14 N -0.97 -61.73 13.06 21.65 0.28 -61.44 16 15 Si 0.98 47.08 29.55 68.60 2.03 49.10 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.16 -4.27 5.48 -10.79 -0.06 -4.33 16 20 C -0.17 -3.66 9.59 30.62 0.29 -3.37 16 21 C -0.17 -4.02 9.94 30.62 0.30 -3.71 16 22 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 23 H 0.05 1.50 8.10 -2.39 -0.02 1.49 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.13 2.37 8.11 -2.39 -0.02 2.35 16 26 H 0.10 2.62 7.39 -2.39 -0.02 2.61 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.80 6.53 -2.39 -0.02 1.79 16 29 H 0.08 1.81 6.44 -2.38 -0.02 1.80 16 30 H 0.04 1.63 5.34 -2.38 -0.01 1.62 16 31 H 0.02 0.94 7.44 -2.38 -0.02 0.92 16 32 H 0.37 21.99 7.07 -92.71 -0.65 21.33 16 33 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.09 2.32 5.80 -2.39 -0.01 2.30 16 36 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.08 2.18 7.66 -2.39 -0.02 2.16 16 Total: -1.00 -74.82 307.04 3.94 -70.87 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.39 Total: 33.27 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.00 Total: -0.15 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -3.43 Total: -125.02 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -74.82 3.94 -70.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277608321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.078 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds