Wall clock time and date at job start Sun Mar 29 2020 22:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47196 * 2 1 4 4 O 1.21283 * 119.99575 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00335 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99594 * 0.02562 * 5 3 2 7 7 C 1.46501 * 120.00308 * 180.02562 * 5 3 2 8 8 H 1.09000 * 109.46894 * 0.02562 * 7 5 3 9 9 C 1.52998 * 109.46930 * 240.00162 * 7 5 3 10 10 N 1.46497 * 109.47175 * 54.99916 * 9 7 5 11 11 C 1.36938 * 119.99875 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.38816 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.31612 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00077 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47309 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47231 * 119.99867 * 15 13 11 18 18 H 1.48506 * 109.47344 * 239.99919 * 15 13 11 19 19 C 1.52993 * 109.47004 * 120.00028 * 7 5 3 20 20 C 1.53003 * 117.49988 * 248.74516 * 19 7 5 21 21 C 1.53004 * 117.49817 * 180.08937 * 19 7 5 22 22 H 1.09000 * 109.46913 * 299.99998 * 1 2 3 23 23 H 1.09001 * 109.47340 * 59.99709 * 1 2 3 24 24 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46913 * 240.00002 * 2 1 3 26 26 H 1.08996 * 109.47080 * 119.99922 * 2 1 3 27 27 H 1.09001 * 109.47060 * 90.00388 * 6 5 3 28 28 H 1.09004 * 109.47073 * 209.99877 * 6 5 3 29 29 H 1.09000 * 109.47212 * 329.99960 * 6 5 3 30 30 H 1.09003 * 109.47292 * 175.00032 * 9 7 5 31 31 H 1.09000 * 109.47028 * 294.99614 * 9 7 5 32 32 H 0.97000 * 120.00199 * 359.97438 * 10 9 7 33 33 H 0.97004 * 120.00488 * 180.02562 * 14 13 11 34 34 H 1.09006 * 115.55680 * 34.41872 * 19 7 5 35 35 H 1.09001 * 117.49612 * 0.02562 * 20 19 7 36 36 H 1.08999 * 117.49835 * 145.02549 * 20 19 7 37 37 H 1.09009 * 117.49742 * 214.98163 * 21 19 7 38 38 H 1.09000 * 117.49727 * 359.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.3094 0.5536 0.0005 7 6 3.8457 3.0484 0.0011 8 1 2.9979 3.7335 0.0015 9 6 4.6961 3.2891 -1.2478 10 7 3.9195 2.9446 -2.4413 11 6 4.4781 3.0796 -3.6842 12 1 5.4911 3.4405 -3.7847 13 6 3.7421 2.7536 -4.8151 14 7 2.5075 2.3144 -4.6927 15 14 4.5039 2.9385 -6.5106 16 1 5.8929 3.4465 -6.3766 17 1 4.5237 1.6186 -7.1910 18 1 3.7011 3.8967 -7.3123 19 6 4.6953 3.2884 1.2506 20 6 4.1320 4.2289 2.3180 21 6 5.2992 4.6817 1.4374 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.5459 0.2778 -1.0272 28 1 5.2218 0.8556 0.5148 29 1 3.8689 -0.3011 0.5140 30 1 4.9858 4.3390 -1.2934 31 1 5.5902 2.6672 -1.2040 32 1 3.0098 2.6201 -2.3510 33 1 1.9932 2.0862 -5.4829 34 1 5.2828 2.4355 1.5908 35 1 3.1560 4.6762 2.1301 36 1 4.3492 3.9949 3.3602 37 1 6.2839 4.7455 1.9006 38 1 5.0917 5.4272 0.6697 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277608323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:08 Heat of formation + Delta-G solvation = -1.991454 kcal Electronic energy + Delta-G solvation = -18079.234254 eV Core-core repulsion = 15343.926640 eV Total energy + Delta-G solvation = -2735.307614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75281 -37.52756 -35.07298 -33.95594 -32.46938 -31.03701 -28.24746 -26.43321 -24.60580 -23.48671 -22.36472 -21.51317 -19.85993 -18.61878 -17.13171 -16.86620 -16.09807 -15.46539 -14.70150 -14.49162 -14.16418 -13.60452 -13.28379 -12.99566 -12.86739 -12.56881 -12.33097 -11.96742 -11.83276 -11.47657 -11.41332 -11.33335 -11.02820 -10.86891 -10.81641 -10.66617 -10.29140 -10.08217 -9.77029 -9.61445 -9.26356 -8.83800 -8.13625 -6.86211 -5.70451 -2.99627 3.14503 3.37889 3.45183 3.50422 3.52986 3.98505 4.60365 4.82697 4.95784 5.07066 5.12912 5.30112 5.32750 5.44333 5.46715 5.60227 5.71769 5.75146 5.76316 5.87598 5.99676 6.00575 6.05479 6.15899 6.23786 6.25312 6.29897 6.37292 6.49576 6.55674 6.80169 7.08157 7.73547 7.85569 8.47179 8.68896 9.58579 10.17918 10.53464 11.51764 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.008450 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.213490 B = 3312.625610 C = 4382.703256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.517 3.483 4 O -0.543 6.543 5 N -0.597 5.597 6 C 0.081 3.919 7 C 0.161 3.839 8 H 0.099 0.901 9 C 0.149 3.851 10 N -0.728 5.728 11 C -0.239 4.239 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.929 5.929 15 Si 0.905 3.095 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.158 4.158 20 C -0.179 4.179 21 C -0.171 4.171 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.020 0.980 32 H 0.386 0.614 33 H 0.254 0.746 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -3.979 14.057 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.305 3.695 4 O -0.420 6.420 5 N -0.330 5.330 6 C -0.063 4.063 7 C 0.058 3.942 8 H 0.117 0.883 9 C 0.020 3.980 10 N -0.373 5.373 11 C -0.370 4.370 12 H 0.087 0.913 13 C -0.210 4.210 14 N -0.577 5.577 15 Si 0.737 3.263 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.219 1.219 19 C -0.178 4.178 20 C -0.216 4.216 21 C -0.208 4.208 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.927 -3.460 13.916 14.635 hybrid contribution 0.315 -0.124 -1.027 1.081 sum 3.242 -3.585 12.889 13.766 Atomic orbital electron populations 1.21514 0.93414 1.01013 1.03337 1.21617 0.98324 0.94386 1.03739 1.20626 0.81747 0.91682 0.75406 1.90667 1.54819 1.46560 1.49927 1.47604 1.05689 1.06570 1.73117 1.21718 0.93134 0.88818 1.02585 1.20877 0.97058 0.83408 0.92881 0.88271 1.20915 0.93553 0.97551 0.85950 1.42316 1.15298 1.79309 1.00351 1.19257 0.97352 1.36702 0.83699 0.91251 1.24749 0.96247 1.02284 0.97734 1.69698 1.09083 1.50775 1.28178 0.86142 0.78131 0.77178 0.84879 1.20623 1.21954 1.21911 1.22559 1.02985 0.94318 0.97934 1.23007 0.98576 1.04155 0.95848 1.22926 0.97466 0.97497 1.02957 0.92451 0.91581 0.92588 0.88734 0.89704 0.91687 0.91505 0.91710 0.95517 0.96192 0.77957 0.93643 0.87763 0.88705 0.89242 0.88891 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 37.16 0.34 -1.55 16 2 C -0.14 -2.01 4.97 -27.88 -0.14 -2.15 16 3 C 0.52 9.56 7.38 -10.99 -0.08 9.48 16 4 O -0.54 -12.11 15.31 5.55 0.09 -12.03 16 5 N -0.60 -10.20 2.24 -173.93 -0.39 -10.59 16 6 C 0.08 1.10 9.38 59.85 0.56 1.66 16 7 C 0.16 2.89 2.42 -67.93 -0.16 2.72 16 8 H 0.10 2.06 6.66 -51.93 -0.35 1.71 16 9 C 0.15 3.10 5.32 -4.04 -0.02 3.08 16 10 N -0.73 -19.20 5.43 -59.91 -0.33 -19.52 16 11 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 13 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 14 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 15 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 19 C -0.16 -2.20 5.15 -90.62 -0.47 -2.67 16 20 C -0.18 -2.25 10.18 -26.69 -0.27 -2.53 16 21 C -0.17 -2.13 9.80 -26.69 -0.26 -2.39 16 22 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 23 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 26 H 0.08 0.94 7.40 -51.93 -0.38 0.55 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 30 H 0.03 0.57 7.48 -51.93 -0.39 0.18 16 31 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 32 H 0.39 11.06 7.06 -40.82 -0.29 10.77 16 33 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.10 1.30 6.59 -51.93 -0.34 0.96 16 35 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.10 1.31 7.67 -51.93 -0.40 0.92 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -33.59 310.82 -7.13 -40.72 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.14 Total: 9.02 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.75 Total: -1.86 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.01 Total: -58.34 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.59 -7.13 -40.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277608323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.728 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds