Wall clock time and date at job start Sun Mar 29 2020 22:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46559 * 2 1 4 4 C 1.53000 * 109.47269 * 240.00580 * 2 1 3 5 5 N 1.46499 * 109.47440 * 184.99840 * 4 2 1 6 6 C 1.46500 * 120.00198 * 89.99571 * 5 4 2 7 7 C 1.34777 * 119.99874 * 270.00019 * 5 4 2 8 8 O 1.21287 * 120.00071 * 359.97438 * 7 5 4 9 9 C 1.50693 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.09000 * 115.55437 * 325.66840 * 9 7 5 11 11 C 1.53005 * 117.49875 * 111.37901 * 9 7 5 12 12 C 1.53002 * 60.00070 * 107.48999 * 11 9 7 13 13 H 1.08996 * 117.51831 * 252.52045 * 12 11 9 14 14 C 1.52994 * 117.49964 * 107.49067 * 12 11 9 15 15 N 1.46490 * 109.47134 * 120.00251 * 2 1 3 16 16 C 1.36935 * 120.00121 * 274.99769 * 15 2 1 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 2 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 2 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 H 1.08998 * 109.47621 * 59.99922 * 1 2 3 25 25 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47299 * 299.99229 * 1 2 3 27 27 H 1.09000 * 109.46938 * 304.99747 * 4 2 1 28 28 H 1.08999 * 109.47081 * 64.99551 * 4 2 1 29 29 H 1.08995 * 109.46801 * 89.99924 * 6 5 4 30 30 H 1.08997 * 109.46822 * 210.00862 * 6 5 4 31 31 H 1.09010 * 109.46834 * 330.00261 * 6 5 4 32 32 H 1.09006 * 117.49582 * 214.97927 * 11 9 7 33 33 H 1.09002 * 117.49632 * 359.97438 * 11 9 7 34 34 H 1.09006 * 109.47361 * 351.37905 * 14 12 11 35 35 H 1.08998 * 109.47570 * 111.37453 * 14 12 11 36 36 H 1.09001 * 109.47628 * 231.37653 * 14 12 11 37 37 H 0.97000 * 120.00577 * 95.00368 * 15 2 1 38 38 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1259 -1.9918 -0.5614 7 6 4.2676 0.1494 -1.7157 8 8 3.7494 1.1142 -2.2370 9 6 5.7694 0.0416 -1.6549 10 1 6.1705 -0.4411 -0.7637 11 6 6.5160 -0.1750 -2.9727 12 6 6.5849 1.1815 -2.2684 13 1 6.0352 2.0097 -2.7156 14 6 7.9011 1.5563 -1.5843 15 7 2.0183 -0.6906 1.1961 16 6 2.1492 -0.0076 2.3756 17 1 1.8920 1.0402 2.4243 18 6 2.6124 -0.6618 3.5090 19 7 2.9263 -1.9387 3.4495 20 14 2.7902 0.2699 5.1182 21 1 3.3004 -0.6483 6.1680 22 1 3.7447 1.3930 4.9370 23 1 1.4675 0.8056 5.5288 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6055 -1.7197 -1.2953 28 1 1.7516 -0.1581 -2.1370 29 1 4.2823 -2.7685 -1.3099 30 1 5.0851 -1.7018 -0.1326 31 1 3.4758 -2.3721 0.2266 32 1 7.4085 -0.8005 -2.9486 33 1 5.9208 -0.2399 -3.8836 34 1 8.5679 0.6940 -1.5821 35 1 8.3711 2.3774 -2.1256 36 1 7.7023 1.8645 -0.5578 37 1 2.2491 -1.6318 1.1525 38 1 2.8336 -2.4225 2.6139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283651290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:24 Heat of formation + Delta-G solvation = -0.518323 kcal Electronic energy + Delta-G solvation = -17939.288467 eV Core-core repulsion = 15204.044733 eV Total energy + Delta-G solvation = -2735.243734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90566 -37.25255 -35.97196 -34.31101 -32.23072 -28.94465 -28.46347 -26.93797 -25.94210 -23.69454 -22.82737 -20.84343 -20.12021 -18.69058 -17.47736 -16.95477 -15.93304 -15.39822 -14.59402 -14.54425 -13.96161 -13.63232 -13.54721 -13.20929 -12.73740 -12.57418 -12.36836 -12.15088 -12.00693 -11.84235 -11.43916 -11.40997 -11.20232 -10.77570 -10.60969 -10.31191 -10.23733 -9.98513 -9.94056 -9.43286 -9.19589 -8.92347 -8.17883 -7.01174 -6.09402 -3.07869 2.78907 3.34691 3.52300 3.55238 3.72302 3.89542 4.62710 4.67833 4.81462 4.84113 5.17703 5.31196 5.36664 5.51409 5.55878 5.62298 5.62856 5.68977 5.75528 5.78946 5.81803 5.94485 6.03496 6.09544 6.20034 6.22565 6.28635 6.33658 6.56932 6.77382 6.83287 7.11299 7.74591 7.85064 8.54202 8.75140 9.23620 10.08896 10.24885 11.38559 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.007464 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.307781 B = 3750.650992 C = 4463.390707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.109 3.891 5 N -0.592 5.592 6 C 0.085 3.915 7 C 0.545 3.455 8 O -0.552 6.552 9 C -0.186 4.186 10 H 0.125 0.875 11 C -0.151 4.151 12 C -0.124 4.124 13 H 0.115 0.885 14 C -0.123 4.123 15 N -0.731 5.731 16 C -0.321 4.321 17 H 0.062 0.938 18 C -0.047 4.047 19 N -0.946 5.946 20 Si 1.077 2.923 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.296 1.296 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.364 0.636 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 0.785 -11.565 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.014 4.014 5 N -0.323 5.323 6 C -0.059 4.059 7 C 0.333 3.667 8 O -0.431 6.431 9 C -0.207 4.207 10 H 0.143 0.857 11 C -0.188 4.188 12 C -0.142 4.142 13 H 0.133 0.867 14 C -0.180 4.180 15 N -0.376 5.376 16 C -0.452 4.452 17 H 0.080 0.920 18 C -0.243 4.243 19 N -0.593 5.593 20 Si 0.909 3.091 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.224 1.224 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.199 0.801 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.202 1.367 -10.191 12.008 hybrid contribution -0.562 -0.257 -1.370 1.503 sum 5.640 1.110 -11.561 12.911 Atomic orbital electron populations 1.22353 0.98736 1.00730 1.00383 1.20596 0.91935 0.96299 0.86271 0.92962 1.21850 0.79003 1.01027 0.99530 1.47500 1.06512 1.21283 1.56985 1.21851 0.99522 0.87131 0.97374 1.19538 0.87722 0.81907 0.77487 1.90634 1.74896 1.31408 1.46174 1.22359 0.91783 1.06942 0.99644 0.85715 1.23052 1.01576 0.99810 0.94366 1.22338 0.97689 0.92567 1.01644 0.86704 1.21392 0.94548 1.01444 1.00626 1.42473 1.79324 1.09520 1.06234 1.20049 1.41051 0.95037 0.89041 0.91999 1.25682 0.99715 0.97523 1.01426 1.70928 1.52026 1.08252 1.28065 0.83265 0.75894 0.74289 0.75693 1.21080 1.22406 1.22367 0.94185 0.93620 0.92506 0.91125 0.90121 0.93388 0.91081 0.90149 0.88056 0.88605 0.92459 0.91910 0.91769 0.80121 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.16 3.37 3.20 -67.93 -0.22 3.15 16 3 H 0.05 1.25 8.08 -51.93 -0.42 0.83 16 4 C 0.11 1.95 5.05 -4.04 -0.02 1.93 16 5 N -0.59 -10.48 2.73 -181.57 -0.50 -10.97 16 6 C 0.08 1.34 9.89 59.85 0.59 1.93 16 7 C 0.55 9.98 7.46 -10.99 -0.08 9.90 16 8 O -0.55 -11.67 15.84 5.55 0.09 -11.58 16 9 C -0.19 -2.73 5.01 -91.77 -0.46 -3.19 16 10 H 0.13 1.77 6.44 -51.93 -0.33 1.43 16 11 C -0.15 -1.74 9.88 -26.73 -0.26 -2.01 16 12 C -0.12 -1.61 5.92 -90.62 -0.54 -2.15 16 13 H 0.11 1.66 7.67 -51.93 -0.40 1.26 16 14 C -0.12 -1.31 10.19 37.15 0.38 -0.93 16 15 N -0.73 -17.98 4.56 -53.43 -0.24 -18.23 16 16 C -0.32 -9.02 9.93 -15.06 -0.15 -9.17 16 17 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 19 N -0.95 -28.42 13.70 55.49 0.76 -27.66 16 20 Si 1.08 26.11 29.92 -169.99 -5.09 21.02 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.08 1.41 7.42 -51.93 -0.39 1.02 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.10 5.99 -51.93 -0.31 0.78 16 31 H 0.08 1.44 5.63 -51.92 -0.29 1.15 16 32 H 0.10 0.94 8.05 -51.93 -0.42 0.53 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.36 8.92 4.16 -40.82 -0.17 8.75 16 38 H 0.25 7.32 6.77 -40.82 -0.28 7.05 16 LS Contribution 310.57 15.07 4.68 4.68 Total: -1.00 -32.54 310.57 -6.80 -39.34 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.00 Total: 8.06 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.50 Total: -4.66 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.02 Total: -56.86 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.09 Total: 21.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.54 -6.80 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283651290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.821 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds