Wall clock time and date at job start Sun Mar 29 2020 22:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 N 1.46508 * 109.47024 * 175.00215 * 4 2 1 6 6 C 1.46500 * 119.99675 * 269.99964 * 5 4 2 7 7 C 1.34774 * 119.99987 * 90.00310 * 5 4 2 8 8 O 1.21287 * 119.99712 * 359.97438 * 7 5 4 9 9 C 1.50693 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.09002 * 115.55215 * 325.66597 * 9 7 5 11 11 C 1.53001 * 117.50090 * 111.37541 * 9 7 5 12 12 C 1.53003 * 117.49696 * 179.97438 * 9 7 5 13 13 H 1.08995 * 117.50057 * 0.02562 * 12 9 7 14 14 C 1.53002 * 117.49503 * 145.02129 * 12 9 7 15 15 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 16 16 C 1.36939 * 119.99933 * 85.27615 * 15 2 1 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 2 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 2 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 26 26 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 27 27 H 1.09000 * 109.46944 * 295.00111 * 4 2 1 28 28 H 1.08997 * 109.47436 * 55.00260 * 4 2 1 29 29 H 1.08999 * 109.46847 * 90.00471 * 6 5 4 30 30 H 1.09002 * 109.46574 * 209.99698 * 6 5 4 31 31 H 1.08992 * 109.47230 * 329.99958 * 6 5 4 32 32 H 1.08997 * 117.49969 * 214.97931 * 11 9 7 33 33 H 1.08998 * 117.49703 * 0.02562 * 11 9 7 34 34 H 1.09002 * 109.47520 * 60.00115 * 14 12 9 35 35 H 1.09006 * 109.47103 * 179.97438 * 14 12 9 36 36 H 1.08994 * 109.47083 * 299.99481 * 14 12 9 37 37 H 0.97001 * 119.99790 * 264.99588 * 15 2 1 38 38 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2675 0.1493 1.7157 8 8 3.7494 1.1144 2.2363 9 6 5.7694 0.0415 1.6549 10 1 6.1721 -0.9679 1.7399 11 6 6.5122 1.0249 0.7482 12 6 6.5849 1.1817 2.2680 13 1 6.0351 2.0095 2.7157 14 6 7.9035 0.8179 2.9534 15 7 2.0184 -0.6906 -1.1961 16 6 2.1545 -0.0062 -2.3743 17 1 1.8977 1.0417 -2.4228 18 6 2.6228 -0.6591 -3.5062 19 7 2.9355 -1.9363 -3.4471 20 14 2.8079 0.2744 -5.1136 21 1 2.3922 1.6863 -4.9167 22 1 4.2268 0.2328 -5.5496 23 1 1.9522 -0.3537 -6.1521 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7515 -0.1582 2.1370 28 1 1.6054 -1.7197 1.2953 29 1 4.2798 -1.7932 -0.4992 30 1 5.0864 -2.1897 1.0372 31 1 3.4770 -2.8598 0.6780 32 1 7.4037 0.6626 0.2364 33 1 5.9145 1.7502 0.1961 34 1 8.5690 0.3431 2.2324 35 1 8.3734 1.7221 3.3404 36 1 7.7078 0.1294 3.7754 37 1 2.2491 -1.6318 -1.1525 38 1 3.2623 -2.3926 -4.2382 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283651291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:25 Heat of formation + Delta-G solvation = -22.607458 kcal Electronic energy + Delta-G solvation = -17944.422589 eV Core-core repulsion = 15208.220998 eV Total energy + Delta-G solvation = -2736.201591 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17811 -38.46498 -37.31521 -35.79694 -33.94262 -30.78142 -29.68497 -28.23029 -27.19068 -25.76068 -24.15393 -21.97927 -21.39277 -19.92092 -19.27697 -18.26589 -17.24809 -16.82249 -16.29519 -15.82519 -15.33393 -15.20359 -14.85491 -14.17119 -13.95469 -13.85159 -13.65420 -13.54779 -13.27714 -13.12701 -12.90217 -12.83224 -12.66044 -12.51014 -12.29078 -12.17690 -11.88017 -11.65949 -11.27779 -11.01301 -10.97418 -10.72358 -9.56471 -8.93675 -7.92574 -5.17891 1.44543 1.46147 1.52277 1.54691 2.09135 2.55980 2.89443 3.40715 3.53970 3.81938 3.85447 3.90933 4.08277 4.13044 4.33154 4.40262 4.42103 4.62595 4.66770 4.70385 4.78479 4.83319 4.89515 4.97037 5.02482 5.05245 5.17815 5.21430 5.23915 5.38773 5.44507 5.51966 5.68691 6.30230 6.47663 7.21355 7.38016 8.10586 8.40189 9.30113 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.007558 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.833859 B = 3703.808455 C = 4421.999717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.017 0.983 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.084 3.916 7 C 0.533 3.467 8 O -0.592 6.592 9 C -0.195 4.195 10 H 0.148 0.852 11 C -0.148 4.148 12 C -0.116 4.116 13 H 0.093 0.907 14 C -0.115 4.115 15 N -0.722 5.722 16 C -0.233 4.233 17 H 0.057 0.943 18 C -0.063 4.063 19 N -0.958 5.958 20 Si 0.960 3.040 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.292 1.292 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.379 0.621 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -0.212 11.940 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.035 0.965 4 C -0.009 4.009 5 N -0.324 5.324 6 C -0.058 4.058 7 C 0.322 3.678 8 O -0.474 6.474 9 C -0.215 4.215 10 H 0.166 0.834 11 C -0.185 4.185 12 C -0.135 4.135 13 H 0.111 0.889 14 C -0.172 4.172 15 N -0.364 5.364 16 C -0.366 4.366 17 H 0.075 0.925 18 C -0.256 4.256 19 N -0.609 5.609 20 Si 0.790 3.210 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.220 1.220 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.213 0.787 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.823 0.397 12.088 13.886 hybrid contribution -0.272 0.184 -1.411 1.449 sum 6.552 0.581 10.677 12.540 Atomic orbital electron populations 1.22207 0.96763 1.01564 1.00667 1.20760 0.93354 0.94563 0.87029 0.96472 1.21802 0.79492 1.01950 0.97634 1.47655 1.06533 1.21864 1.56322 1.21921 0.99247 0.86770 0.97888 1.20224 0.89374 0.81399 0.76755 1.90600 1.75917 1.32944 1.47963 1.22399 0.89505 0.99302 1.10321 0.83445 1.23080 1.01855 0.99993 0.93606 1.22407 0.98427 0.97873 0.94805 0.88867 1.21393 0.92872 1.02439 1.00482 1.42423 1.78354 1.10171 1.05488 1.19441 1.34793 0.93559 0.88762 0.92454 1.25277 1.03027 0.96869 1.00453 1.69758 1.52459 1.09510 1.29174 0.85277 0.76918 0.77929 0.80860 1.20316 1.21911 1.21951 0.92478 0.91504 0.94560 0.89837 0.88724 0.93761 0.88812 0.90128 0.85521 0.91085 0.91008 0.90742 0.91246 0.78736 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 9.49 71.98 0.68 -4.84 16 2 C 0.15 6.38 3.20 44.99 0.14 6.52 16 3 H 0.02 0.83 8.08 -2.39 -0.02 0.81 16 4 C 0.11 3.98 5.07 86.38 0.44 4.42 16 5 N -0.59 -20.61 2.73 -846.76 -2.31 -22.92 16 6 C 0.08 2.57 9.04 127.77 1.15 3.73 16 7 C 0.53 19.35 7.46 87.66 0.65 20.00 16 8 O -0.59 -25.40 15.84 -3.05 -0.05 -25.45 16 9 C -0.19 -5.44 5.01 -11.54 -0.06 -5.50 16 10 H 0.15 3.25 6.44 -2.39 -0.02 3.23 16 11 C -0.15 -4.03 9.88 30.58 0.30 -3.73 16 12 C -0.12 -2.88 5.92 -10.81 -0.06 -2.94 16 13 H 0.09 2.71 7.67 -2.39 -0.02 2.69 16 14 C -0.11 -1.90 10.19 71.98 0.73 -1.17 16 15 N -0.72 -35.60 4.39 -322.94 -1.42 -37.02 16 16 C -0.23 -13.03 9.93 84.03 0.83 -12.20 16 17 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 18 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 19 N -0.96 -55.87 13.06 21.65 0.28 -55.59 16 20 Si 0.96 46.29 29.55 68.60 2.03 48.32 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 2.83 7.42 -2.39 -0.02 2.82 16 28 H 0.09 2.84 7.89 -2.39 -0.02 2.82 16 29 H 0.04 1.73 7.39 -2.39 -0.02 1.72 16 30 H 0.09 2.18 6.00 -2.39 -0.01 2.17 16 31 H 0.08 2.20 7.89 -2.39 -0.02 2.18 16 32 H 0.13 2.78 8.05 -2.39 -0.02 2.76 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 1.01 7.90 -2.39 -0.02 0.99 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.38 19.08 6.26 -92.71 -0.58 18.50 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.55 313.56 4.27 -63.28 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.45 Total: 28.19 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.29 Total: 1.19 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -3.45 Total: -115.53 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.05 Total: -25.45 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -67.55 4.27 -63.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283651291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.675 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds