Wall clock time and date at job start Sun Mar 29 2020 22:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 C 1.50693 * 109.46971 * 120.00045 * 2 1 3 5 5 O 1.21276 * 120.00503 * 239.99572 * 4 2 1 6 6 N 1.34782 * 119.99778 * 60.00267 * 4 2 1 7 7 C 1.46503 * 119.99635 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46818 * 179.97438 * 7 6 4 9 9 H 1.09002 * 112.85017 * 45.33137 * 8 7 6 10 10 C 1.53786 * 113.61503 * 176.52755 * 8 7 6 11 11 C 1.53783 * 87.08050 * 140.06140 * 10 8 7 12 12 H 1.08998 * 113.60991 * 89.11784 * 11 10 8 13 13 N 1.46495 * 113.61332 * 219.93420 * 11 10 8 14 14 C 1.36945 * 119.99888 * 205.00043 * 13 11 10 15 15 H 1.08000 * 119.99383 * 0.02562 * 14 13 11 16 16 C 1.38806 * 119.99838 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00340 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99721 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46958 * 90.00260 * 18 16 14 20 20 H 1.48505 * 109.46914 * 210.00025 * 18 16 14 21 21 H 1.48491 * 109.47279 * 330.00163 * 18 16 14 22 22 C 1.53781 * 113.61337 * 274.13548 * 8 7 6 23 23 H 1.08997 * 109.47077 * 300.00060 * 1 2 3 24 24 H 1.08997 * 109.46928 * 59.99846 * 1 2 3 25 25 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46952 * 239.99963 * 2 1 3 27 27 H 1.08994 * 109.47220 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47189 * 300.00307 * 3 2 1 29 29 H 1.09007 * 109.46681 * 60.00169 * 3 2 1 30 30 H 0.96996 * 120.00351 * 359.97438 * 6 4 2 31 31 H 1.08997 * 109.47388 * 60.00196 * 7 6 4 32 32 H 1.09004 * 109.47244 * 299.99375 * 7 6 4 33 33 H 1.08992 * 113.61675 * 254.61398 * 10 8 7 34 34 H 1.09000 * 113.60973 * 25.51686 * 10 8 7 35 35 H 0.96995 * 120.00313 * 25.00649 * 13 11 10 36 36 H 0.96999 * 120.00271 * 180.02562 * 17 16 14 37 37 H 1.08999 * 113.61567 * 334.48261 * 22 8 7 38 38 H 1.08998 * 113.61196 * 105.38615 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4436 7 6 2.1955 -2.6916 2.6395 8 6 1.6849 -4.1339 2.6398 9 1 1.7934 -4.6215 1.6710 10 6 2.2126 -4.9740 3.8149 11 6 0.8051 -5.5870 3.9062 12 1 0.6732 -6.4719 3.2836 13 7 0.3389 -5.7839 5.2809 14 6 -0.6028 -6.7399 5.5542 15 1 -1.0014 -7.3488 4.7562 16 6 -1.0450 -6.9261 6.8567 17 7 -0.5596 -6.1836 7.8290 18 14 -2.3290 -8.2307 7.2295 19 1 -1.6532 -9.5162 7.5389 20 1 -3.1422 -7.8053 8.3971 21 1 -3.2124 -8.4074 6.0491 22 6 0.2844 -4.2914 3.2553 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.1488 -2.4721 0.8053 31 1 1.8325 -2.1779 3.5297 32 1 3.2855 -2.6917 2.6391 33 1 2.9829 -5.6899 3.5286 34 1 2.4877 -4.3806 4.6869 35 1 0.6971 -5.2372 5.9975 36 1 -0.8683 -6.3140 8.7393 37 1 0.0334 -3.5119 3.9746 38 1 -0.5007 -4.4567 2.5175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316612683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:02 Heat of formation + Delta-G solvation = -27.317090 kcal Electronic energy + Delta-G solvation = -16945.504154 eV Core-core repulsion = 14209.098338 eV Total energy + Delta-G solvation = -2736.405816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98196 -38.48908 -34.68306 -34.61740 -33.24024 -30.27257 -27.73155 -27.08158 -25.09290 -24.12438 -23.03623 -21.02557 -20.00670 -18.97257 -17.26397 -17.00021 -16.09974 -15.58960 -14.98028 -14.74314 -14.23843 -14.04665 -13.53849 -13.32835 -12.95154 -12.80974 -12.51897 -12.13793 -11.89296 -11.81270 -11.40442 -11.38172 -11.30163 -11.21288 -10.84794 -10.51997 -10.22808 -10.14252 -9.82961 -9.73265 -9.46130 -8.99151 -8.87040 -6.96890 -5.78859 -3.07871 2.63376 3.19524 3.42188 3.47227 3.49143 4.50980 4.57736 4.65859 4.74221 4.98369 4.99867 5.16774 5.24803 5.36254 5.46191 5.48957 5.51630 5.60581 5.68640 5.82772 5.86708 5.90902 5.95311 6.04220 6.08865 6.27296 6.32090 6.36408 6.48228 6.59004 6.82768 7.11095 7.50564 7.68261 8.22765 8.39731 9.50682 10.09108 10.43245 11.43544 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044917 B = 0.003866 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.226392 B = 7240.922817 C = 7403.164255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.511 3.489 5 O -0.544 6.544 6 N -0.725 5.725 7 C 0.131 3.869 8 C -0.127 4.127 9 H 0.087 0.913 10 C -0.142 4.142 11 C 0.166 3.834 12 H 0.075 0.925 13 N -0.713 5.713 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.161 4.161 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 9.849 -17.568 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.190 4.190 4 C 0.297 3.703 5 O -0.421 6.421 6 N -0.376 5.376 7 C 0.008 3.992 8 C -0.146 4.146 9 H 0.106 0.894 10 C -0.182 4.182 11 C 0.053 3.947 12 H 0.093 0.907 13 N -0.351 5.351 14 C -0.376 4.376 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.202 4.202 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.233 0.767 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.107 10.104 -16.921 20.131 hybrid contribution -0.874 -0.771 0.186 1.180 sum 3.234 9.333 -16.735 19.432 Atomic orbital electron populations 1.21796 0.92868 1.02662 1.02927 1.21310 0.97635 0.98051 0.96703 1.21605 1.01711 0.93657 1.02021 1.20701 0.80119 0.81807 0.87646 1.90695 1.38101 1.66104 1.47224 1.46085 1.53555 1.12078 1.25893 1.21427 0.98669 0.91813 0.87313 1.22637 0.99344 0.93614 0.99040 0.89444 1.23443 0.99329 0.98525 0.96922 1.21572 0.91084 0.93993 0.88010 0.90680 1.42417 1.47538 1.42430 1.02686 1.19308 1.14506 1.10945 0.92841 0.91094 1.24773 1.00536 0.99805 0.95803 1.69662 1.46481 1.41987 0.99883 0.86187 0.81161 0.81280 0.77543 1.21683 1.21753 1.20732 1.23982 0.94104 1.02426 0.99673 0.91936 0.91498 0.92002 0.88711 0.92041 0.92186 0.91911 0.76654 0.91320 0.91889 0.92010 0.90121 0.78061 0.93429 0.90392 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.09 37.16 0.34 -0.74 16 2 C -0.12 -1.01 3.26 -91.77 -0.30 -1.31 16 3 C -0.13 -1.18 8.48 37.16 0.32 -0.86 16 4 C 0.51 6.44 7.15 -10.99 -0.08 6.36 16 5 O -0.54 -9.18 15.98 5.56 0.09 -9.09 16 6 N -0.72 -8.23 5.45 -60.29 -0.33 -8.56 16 7 C 0.13 1.75 5.50 -4.04 -0.02 1.73 16 8 C -0.13 -1.70 3.75 -89.80 -0.34 -2.03 16 9 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 10 C -0.14 -2.28 7.39 -25.92 -0.19 -2.47 16 11 C 0.17 3.20 4.48 -66.98 -0.30 2.90 16 12 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 13 N -0.71 -17.85 5.41 -52.50 -0.28 -18.13 16 14 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 18 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.16 -2.64 7.45 -25.78 -0.19 -2.84 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.64 8.10 -51.92 -0.42 0.22 16 30 H 0.40 3.50 7.89 -40.82 -0.32 3.18 16 31 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.39 10.29 7.92 -40.82 -0.32 9.97 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -32.17 315.61 -7.55 -39.71 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.47 Total: 8.21 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.01 Total: -6.66 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.11 Total: -54.21 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.17 -7.55 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316612683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.397 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds