Wall clock time and date at job start Sun Mar 29 2020 22:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47042 * 2 1 4 4 O 1.21276 * 119.99934 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00254 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00204 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.45748 * 60.02807 * 6 5 3 8 8 C 1.53046 * 109.45881 * 179.97438 * 6 5 3 9 9 C 1.53193 * 109.33731 * 58.62886 * 8 6 5 10 10 N 1.46998 * 108.73842 * 54.61716 * 9 8 6 11 11 C 1.36935 * 120.60901 * 126.38672 * 10 9 8 12 12 H 1.07998 * 119.99952 * 207.67649 * 11 10 9 13 13 C 1.38815 * 119.99918 * 27.68672 * 11 10 9 14 14 N 1.31614 * 120.00332 * 17.35531 * 13 11 10 15 15 Si 1.86808 * 119.99812 * 197.35895 * 13 11 10 16 16 H 1.48506 * 109.46866 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47167 * 119.99620 * 15 13 11 18 18 H 1.48494 * 109.47081 * 240.00049 * 15 13 11 19 19 C 1.46925 * 118.75739 * 306.41053 * 10 9 8 20 20 C 1.53041 * 109.44843 * 300.06092 * 6 5 3 21 21 H 1.09000 * 109.47185 * 60.00188 * 1 2 3 22 22 H 1.09005 * 109.46791 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46890 * 299.99685 * 1 2 3 24 24 H 1.09003 * 109.47198 * 239.99546 * 2 1 3 25 25 H 1.09000 * 109.47185 * 119.99812 * 2 1 3 26 26 H 0.97005 * 119.99644 * 0.02562 * 5 3 2 27 27 H 1.09003 * 109.47127 * 179.97438 * 7 6 5 28 28 H 1.09005 * 109.47768 * 299.96933 * 7 6 5 29 29 H 1.09007 * 109.47893 * 59.97316 * 7 6 5 30 30 H 1.08996 * 109.49270 * 178.59556 * 8 6 5 31 31 H 1.08999 * 109.49764 * 298.65723 * 8 6 5 32 32 H 1.08996 * 109.58385 * 174.44127 * 9 8 6 33 33 H 1.08998 * 109.58378 * 294.86296 * 9 8 6 34 34 H 0.97007 * 120.00009 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.58684 * 293.82104 * 19 10 9 36 36 H 1.08997 * 109.69945 * 173.46562 * 19 10 9 37 37 H 1.08999 * 109.49694 * 61.30328 * 20 6 5 38 38 H 1.08999 * 109.49566 * 181.36542 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 3.3366 3.7694 1.2485 8 6 5.3762 3.0481 -0.0010 9 6 5.8834 2.2949 -1.2348 10 7 5.2794 2.8926 -2.4343 11 6 6.0648 3.3190 -3.4718 12 1 5.7253 4.1192 -4.1127 13 6 7.2973 2.7224 -3.7000 14 7 7.5708 1.5515 -3.1649 15 14 8.5677 3.5817 -4.7665 16 1 8.0184 4.8756 -5.2453 17 1 9.7965 3.8293 -3.9702 18 1 8.8978 2.7230 -5.9321 19 6 3.8175 3.0244 -2.4987 20 6 3.3336 3.7694 -1.2501 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9878 0.9298 -0.0013 27 1 3.7001 4.7970 1.2486 28 1 2.2465 3.7698 1.2492 29 1 3.7002 3.2554 2.1383 30 1 5.7401 4.0752 -0.0266 31 1 5.7398 2.5556 0.9009 32 1 6.9688 2.3763 -1.2919 33 1 5.5968 1.2456 -1.1657 34 1 8.4320 1.1344 -3.3247 35 1 3.3625 2.0346 -2.5327 36 1 3.5381 3.5858 -3.3903 37 1 2.2439 3.7896 -1.2373 38 1 3.7163 4.7899 -1.2637 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324292628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:33 Heat of formation + Delta-G solvation = -28.214966 kcal Electronic energy + Delta-G solvation = -18500.822734 eV Core-core repulsion = 15764.377983 eV Total energy + Delta-G solvation = -2736.444751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02271 -37.41100 -34.38715 -32.79730 -31.70073 -30.61240 -29.86269 -27.39707 -24.52865 -23.93560 -22.25727 -21.01513 -20.02086 -18.60536 -17.05734 -16.64715 -15.40326 -14.88087 -14.73132 -13.99046 -13.81686 -13.51237 -13.36974 -13.12292 -12.89606 -12.44696 -12.15384 -11.70596 -11.69274 -11.56050 -11.29710 -11.21452 -11.00402 -10.91441 -10.72234 -10.33817 -10.25015 -9.86160 -9.72370 -9.58836 -9.02992 -8.56031 -8.44633 -6.66164 -5.80094 -3.20781 3.02327 3.36405 3.44692 3.47224 3.61632 4.49857 4.94555 5.17723 5.20167 5.32605 5.38187 5.45929 5.55689 5.64973 5.71681 5.84776 6.01165 6.04102 6.08406 6.21753 6.25902 6.35079 6.36158 6.44813 6.55285 6.72823 6.74554 6.86296 6.99282 7.14397 7.30514 7.58622 7.79475 8.00068 8.44469 8.65648 9.21134 9.84900 10.41949 11.28582 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036651 B = 0.006670 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.774782 B = 4196.935781 C = 4408.895078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C 0.512 3.488 4 O -0.547 6.547 5 N -0.712 5.712 6 C 0.183 3.817 7 C -0.159 4.159 8 C -0.146 4.146 9 C 0.173 3.827 10 N -0.592 5.592 11 C -0.248 4.248 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.905 5.905 15 Si 0.901 3.099 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.291 1.291 19 C 0.151 3.849 20 C -0.142 4.142 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.399 0.601 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.016 0.984 34 H 0.252 0.748 35 H 0.014 0.986 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -2.143 8.315 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.188 4.188 3 C 0.299 3.701 4 O -0.425 6.425 5 N -0.363 5.363 6 C 0.097 3.903 7 C -0.218 4.218 8 C -0.185 4.185 9 C 0.046 3.954 10 N -0.314 5.314 11 C -0.378 4.378 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.550 5.550 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.218 1.218 19 C 0.025 3.975 20 C -0.182 4.182 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.234 0.766 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.432 -1.559 8.272 11.914 hybrid contribution 1.176 -0.053 -0.545 1.298 sum -7.255 -1.612 7.727 10.721 Atomic orbital electron populations 1.21485 0.93399 1.01044 1.03139 1.21646 0.98326 0.94716 1.04088 1.20596 0.82438 0.91377 0.75735 1.90595 1.55577 1.46220 1.50137 1.46206 1.06724 1.09095 1.74252 1.20247 0.94365 0.80740 0.94908 1.22217 1.02918 0.99877 0.96748 1.22519 0.92692 1.02754 1.00576 1.20750 0.99538 0.92484 0.82585 1.44072 0.99625 1.71995 1.15757 1.19253 0.99038 1.12036 1.07469 0.91703 1.25008 1.00033 0.95360 0.99348 1.70029 1.22635 1.14154 1.48173 0.86241 0.81714 0.79156 0.79801 1.20276 1.21587 1.21784 1.20823 0.85598 0.96374 0.94686 1.22393 1.00991 0.99262 0.95588 0.92034 0.92566 0.92268 0.89044 0.89457 0.76561 0.92392 0.90950 0.93477 0.91151 0.92842 0.89303 0.96633 0.93767 0.96770 0.93206 0.90898 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.15 -1.72 6.42 -27.88 -0.18 -1.90 16 3 C 0.51 7.95 7.25 -10.99 -0.08 7.87 16 4 O -0.55 -10.00 12.20 5.56 0.07 -9.93 16 5 N -0.71 -11.23 4.10 -47.57 -0.19 -11.42 16 6 C 0.18 3.15 0.66 -131.78 -0.09 3.06 16 7 C -0.16 -2.48 8.40 37.15 0.31 -2.17 16 8 C -0.15 -2.67 4.95 -26.61 -0.13 -2.80 16 9 C 0.17 3.91 5.04 -3.67 -0.02 3.89 16 10 N -0.59 -14.67 3.00 -172.24 -0.52 -15.19 16 11 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 12 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 13 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 14 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 15 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 C 0.15 3.32 6.26 -3.69 -0.02 3.30 16 20 C -0.14 -2.73 4.67 -26.59 -0.12 -2.86 16 21 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.40 5.89 7.27 -40.82 -0.30 5.60 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 33 H 0.02 0.36 6.94 -51.93 -0.36 0.00 16 34 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 36 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 37 H 0.07 1.43 6.20 -51.93 -0.32 1.10 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 294.55 15.07 4.44 4.44 Total: -1.00 -30.09 294.55 -7.03 -37.12 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.20 Total: 3.33 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.22 Total: 0.23 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.09 -7.03 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324292628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.907 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds