Wall clock time and date at job start Sun Mar 29 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47159 * 2 1 4 4 O 1.21283 * 120.00262 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99928 * 179.72352 * 3 2 1 6 6 C 1.47423 * 125.65109 * 359.97383 * 5 3 2 7 7 C 1.55123 * 104.72654 * 155.81318 * 6 5 3 8 8 H 1.09001 * 111.22902 * 279.17666 * 7 6 5 9 9 C 1.53006 * 110.90681 * 155.27290 * 7 6 5 10 10 C 1.55156 * 101.48498 * 37.29727 * 7 6 5 11 11 H 1.08992 * 110.87774 * 82.76806 * 10 7 6 12 12 C 1.53002 * 110.71849 * 205.96946 * 10 7 6 13 13 N 1.46500 * 109.47187 * 179.97438 * 12 10 7 14 14 C 1.36933 * 120.00052 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00108 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99518 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00291 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47377 * 90.00040 * 18 16 14 20 20 H 1.48505 * 109.47225 * 210.00192 * 18 16 14 21 21 H 1.48500 * 109.46917 * 329.99513 * 18 16 14 22 22 C 1.47025 * 125.65000 * 180.27553 * 5 3 2 23 23 H 1.08994 * 109.47089 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47066 * 299.99797 * 1 2 3 25 25 H 1.09000 * 109.47234 * 59.99288 * 1 2 3 26 26 H 1.09004 * 109.47066 * 240.00203 * 2 1 3 27 27 H 1.08994 * 109.47405 * 120.00033 * 2 1 3 28 28 H 1.09004 * 110.36802 * 274.74548 * 6 5 3 29 29 H 1.09004 * 110.36924 * 37.06499 * 6 5 3 30 30 H 1.08999 * 109.46981 * 307.98017 * 9 7 6 31 31 H 1.09005 * 109.46860 * 67.97747 * 9 7 6 32 32 H 1.09004 * 109.47020 * 187.97469 * 9 7 6 33 33 H 1.08997 * 109.47028 * 299.97512 * 12 10 7 34 34 H 1.09000 * 109.47246 * 59.97721 * 12 10 7 35 35 H 0.96999 * 119.99536 * 0.02562 * 13 12 10 36 36 H 0.97001 * 119.99337 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.88256 * 300.44464 * 22 5 3 38 38 H 1.08998 * 109.87939 * 61.45228 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0056 6 6 4.4210 0.6463 0.0127 7 6 5.6560 1.3594 -0.5978 8 1 5.6029 1.3781 -1.6863 9 6 6.9546 0.7020 -0.1261 10 6 5.5102 2.7877 -0.0093 11 1 5.9203 2.8359 0.9994 12 6 6.1860 3.8183 -0.9160 13 7 6.0316 5.1547 -0.3361 14 6 6.5596 6.2440 -0.9762 15 1 7.0895 6.1180 -1.9087 16 6 6.4139 7.5103 -0.4264 17 7 5.7685 7.6637 0.7105 18 14 7.1335 8.9963 -1.2998 19 1 6.1253 9.5575 -2.2345 20 1 7.5070 10.0267 -0.2977 21 1 8.3406 8.5862 -2.0615 22 6 3.9816 2.9983 0.0121 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.6315 0.3247 1.0327 29 1 4.1330 -0.2060 -0.6028 30 1 6.9528 0.6332 0.9617 31 1 7.0315 -0.2979 -0.5533 32 1 7.8045 1.3022 -0.4510 33 1 7.2461 3.5821 -1.0074 34 1 5.7220 3.7944 -1.9021 35 1 5.5560 5.2678 0.5017 36 1 5.6663 8.5486 1.0945 37 1 3.6719 3.5572 -0.8711 38 1 3.6921 3.5390 0.9131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325477114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:24 Heat of formation + Delta-G solvation = -62.420674 kcal Electronic energy + Delta-G solvation = -17487.922194 eV Core-core repulsion = 14749.994173 eV Total energy + Delta-G solvation = -2737.928022 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23084 -39.17644 -36.47081 -34.33162 -33.55010 -33.05261 -30.68447 -27.58941 -27.17928 -25.43079 -24.23327 -22.33405 -21.14386 -20.16675 -19.16658 -18.02827 -17.45402 -16.71153 -16.59338 -15.78162 -15.42063 -15.23469 -14.96683 -14.74505 -14.08514 -13.83381 -13.65726 -13.37278 -13.28182 -13.09692 -12.93542 -12.77612 -12.55999 -12.46985 -12.15328 -12.04398 -11.96311 -11.84057 -11.56334 -11.33832 -10.98246 -10.88827 -9.70482 -9.03171 -7.97236 -5.26888 1.45215 1.47913 1.56172 1.61111 1.99312 2.54237 3.35126 3.41077 3.51851 3.74792 3.81692 4.13845 4.21705 4.24007 4.28843 4.43078 4.50418 4.55400 4.63693 4.74064 4.79087 4.87299 4.92145 4.97043 5.02830 5.05786 5.17675 5.20241 5.26103 5.36739 5.38055 5.46656 5.55295 6.24583 6.55408 7.14631 7.30576 8.06133 8.28499 9.26566 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.005371 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.813096 B = 5211.497650 C = 5988.046387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.507 3.493 4 O -0.601 6.601 5 N -0.620 5.620 6 C 0.104 3.896 7 C -0.089 4.089 8 H 0.088 0.912 9 C -0.134 4.134 10 C -0.091 4.091 11 H 0.084 0.916 12 C 0.164 3.836 13 N -0.748 5.748 14 C -0.248 4.248 15 H 0.078 0.922 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.976 3.024 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.265 1.265 22 C 0.121 3.879 23 H 0.094 0.906 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.015 0.985 35 H 0.372 0.628 36 H 0.251 0.749 37 H 0.037 0.963 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -22.906 -1.678 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.298 3.702 4 O -0.483 6.483 5 N -0.353 5.353 6 C -0.017 4.017 7 C -0.109 4.109 8 H 0.106 0.894 9 C -0.192 4.192 10 C -0.110 4.110 11 H 0.102 0.898 12 C 0.038 3.962 13 N -0.390 5.390 14 C -0.379 4.379 15 H 0.096 0.904 16 C -0.269 4.269 17 N -0.622 5.622 18 Si 0.804 3.196 19 H -0.217 1.217 20 H -0.221 1.221 21 H -0.190 1.190 22 C -0.003 4.003 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.204 0.796 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.142 -22.383 -1.822 22.559 hybrid contribution -0.046 1.864 0.066 1.866 sum -2.187 -20.519 -1.756 20.709 Atomic orbital electron populations 1.21559 0.93505 1.02881 1.01593 1.21689 0.97981 0.90047 1.06825 1.21623 0.80112 0.93601 0.74824 1.90697 1.55924 1.49068 1.52599 1.48778 1.05895 1.08220 1.72419 1.22785 0.85122 0.91012 1.02826 1.22422 0.96023 0.91655 1.00773 0.89355 1.21680 0.94529 1.01162 1.01809 1.22372 0.91886 0.96266 1.00461 0.89800 1.20791 0.97478 0.83580 0.94377 1.42615 1.67083 1.02519 1.26826 1.19667 1.27355 0.87021 1.03895 0.90419 1.25620 1.02274 1.00574 0.98419 1.69839 1.48648 1.22439 1.21311 0.85109 0.78221 0.79056 0.77197 1.21668 1.22059 1.18961 1.21708 0.93698 0.85141 0.99748 0.88746 0.93953 0.93933 0.85987 0.86098 0.89164 0.86834 0.91823 0.89637 0.92788 0.94676 0.96702 0.79633 0.94020 0.94408 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.20 71.98 0.66 -1.84 16 2 C -0.13 -2.10 5.42 29.85 0.16 -1.93 16 3 C 0.51 15.07 7.85 87.66 0.69 15.76 16 4 O -0.60 -24.90 16.31 -3.04 -0.05 -24.95 16 5 N -0.62 -17.38 3.32 -811.34 -2.70 -20.08 16 6 C 0.10 1.77 6.16 86.93 0.54 2.31 16 7 C -0.09 -1.82 3.10 -9.33 -0.03 -1.85 16 8 H 0.09 1.81 8.05 -2.39 -0.02 1.79 16 9 C -0.13 -2.07 9.31 71.98 0.67 -1.40 16 10 C -0.09 -2.83 2.48 -9.61 -0.02 -2.86 16 11 H 0.08 2.67 8.04 -2.39 -0.02 2.65 16 12 C 0.16 6.54 5.58 86.38 0.48 7.02 16 13 N -0.75 -39.28 5.45 -343.46 -1.87 -41.15 16 14 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 17 N -0.97 -61.73 13.06 21.65 0.28 -61.44 16 18 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C 0.12 4.40 6.15 86.73 0.53 4.93 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.04 0.92 8.10 -2.38 -0.02 0.90 16 25 H 0.04 0.92 8.10 -2.39 -0.02 0.91 16 26 H 0.12 1.31 7.86 -2.38 -0.02 1.29 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.25 7.99 -2.38 -0.02 1.23 16 29 H 0.11 1.13 7.49 -2.38 -0.02 1.11 16 30 H 0.06 0.93 8.07 -2.39 -0.02 0.91 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.02 0.62 8.06 -2.39 -0.02 0.60 16 35 H 0.37 21.03 7.52 -92.71 -0.70 20.33 16 36 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.04 1.62 7.77 -2.38 -0.02 1.61 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -77.47 311.79 3.00 -74.47 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.32 Total: 21.14 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 4.99 Total: 2.66 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -4.29 Total: -122.68 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.47 3.00 -74.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325477114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.050 kcal (2) G-P(sol) polarization free energy of solvation -77.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds