Wall clock time and date at job start Sun Mar 29 2020 22:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.52090 * 324.87707 * 15 14 12 17 17 C 1.53116 * 109.52213 * 84.99719 * 15 14 12 18 18 C 1.53041 * 109.28013 * 62.25384 * 17 15 14 19 19 N 1.46847 * 109.52001 * 59.17567 * 18 17 15 20 20 C 1.46841 * 111.20045 * 298.25950 * 19 18 17 21 21 H 1.08994 * 109.46422 * 301.72569 * 20 19 18 22 22 C 1.52997 * 109.46369 * 181.75706 * 20 19 18 23 23 C 1.53044 * 109.52420 * 61.74483 * 20 19 18 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 29 29 H 1.08999 * 109.50449 * 182.19560 * 17 15 14 30 30 H 1.08998 * 109.50653 * 302.27349 * 17 15 14 31 31 H 1.08994 * 109.46401 * 179.19446 * 18 17 15 32 32 H 1.08999 * 109.46177 * 299.16403 * 18 17 15 33 33 H 1.00903 * 111.00157 * 62.35991 * 19 18 17 34 34 H 1.09007 * 109.46936 * 60.00217 * 22 20 19 35 35 H 1.09003 * 109.47614 * 179.97438 * 22 20 19 36 36 H 1.09002 * 109.47564 * 299.99961 * 22 20 19 37 37 H 1.08994 * 109.50499 * 180.88114 * 23 20 19 38 38 H 1.09000 * 109.50157 * 60.75581 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 3.1947 -1.3316 -3.4632 17 6 1.2502 -2.0954 -3.9958 18 6 -0.1374 -1.5349 -4.3159 19 7 -0.0413 -0.6030 -5.4466 20 6 0.8230 0.5388 -5.1218 21 1 0.4292 1.0548 -4.2462 22 6 0.8600 1.5040 -6.3083 23 6 2.2393 0.0402 -4.8257 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 1.1487 0.5386 -2.5436 29 1 1.6343 -2.6331 -4.8626 30 1 1.1816 -2.7755 -3.1467 31 1 -0.8086 -2.3535 -4.5758 32 1 -0.5267 -1.0092 -3.4440 33 1 0.2807 -1.0753 -6.2781 34 1 -0.1486 1.8600 -6.5187 35 1 1.5012 2.3519 -6.0672 36 1 1.2534 0.9882 -7.1843 37 1 2.8768 0.8863 -4.5694 38 1 2.6389 -0.4640 -5.7056 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340283827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:06 Heat of formation + Delta-G solvation = -46.299725 kcal Electronic energy + Delta-G solvation = -18150.323147 eV Core-core repulsion = 15413.094183 eV Total energy + Delta-G solvation = -2737.228965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00402 -38.06166 -33.99340 -33.78757 -32.38475 -31.39198 -29.79564 -27.15898 -25.12610 -23.67954 -22.88717 -21.67886 -20.16850 -19.07314 -16.75609 -16.43143 -15.58788 -15.53253 -15.04518 -14.71745 -14.37336 -14.10207 -13.51542 -13.22154 -13.14989 -12.66927 -12.50662 -12.27608 -12.07469 -12.04736 -11.59762 -11.40871 -11.09034 -10.97581 -10.90749 -10.65488 -10.55772 -10.28163 -9.62975 -9.09144 -8.68801 -8.62367 -8.55947 -8.37742 -6.04327 -4.04374 3.23762 3.31210 3.36797 3.59092 3.77709 4.10709 4.38496 4.60989 4.78133 4.86486 5.04775 5.17933 5.25317 5.31726 5.42370 5.48572 5.57210 5.69618 5.75716 5.88099 5.95405 5.96647 6.06859 6.11242 6.15718 6.18281 6.34474 6.46093 6.73288 6.93239 7.01402 7.16922 7.27216 7.55920 8.13866 8.56652 9.10545 9.17161 9.54921 11.08727 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.006386 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.391912 B = 4383.606782 C = 4673.646113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.005 4.005 3 H 0.051 0.949 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.529 3.471 13 O -0.532 6.532 14 N -0.741 5.741 15 C 0.146 3.854 16 H 0.084 0.916 17 C -0.168 4.168 18 C 0.058 3.942 19 N -0.680 5.680 20 C 0.080 3.920 21 H 0.080 0.920 22 C -0.144 4.144 23 C -0.159 4.159 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.392 0.608 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.336 0.664 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 4.359 -19.118 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.317 3.683 13 O -0.406 6.406 14 N -0.396 5.396 15 C 0.040 3.960 16 H 0.102 0.898 17 C -0.208 4.208 18 C -0.071 4.071 19 N -0.309 5.309 20 C -0.030 4.030 21 H 0.099 0.901 22 C -0.201 4.201 23 C -0.199 4.199 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.227 0.773 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.470 3.956 -18.652 19.583 hybrid contribution 0.054 0.709 0.214 0.742 sum -4.416 4.664 -18.437 19.524 Atomic orbital electron populations 1.22105 0.97356 1.01451 0.99154 1.19310 0.93168 0.97505 0.92728 0.93177 1.20941 1.32024 1.14071 0.87243 0.88922 1.24988 0.95849 0.96570 0.95775 1.69887 1.45534 1.40184 0.97857 0.86909 0.80707 0.83845 0.77049 1.20535 1.22317 1.19290 1.21266 0.78741 0.84269 0.84007 1.90575 1.37209 1.26301 1.86499 1.46352 1.55395 1.32396 1.05453 1.20763 0.98408 0.92036 0.84757 0.89825 1.22613 0.97240 0.98736 1.02251 1.21983 0.95671 0.95379 0.94111 1.60758 1.53164 1.10739 1.06275 1.21569 0.90452 0.92267 0.98712 0.90147 1.21798 1.02308 0.98686 0.97345 1.22572 0.98939 1.00081 0.98269 0.93313 0.92394 0.94959 0.92587 0.77329 0.91755 0.90480 0.90880 0.90487 0.84618 0.91842 0.92119 0.92829 0.90760 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.57 37.16 0.32 -2.63 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 3 H 0.05 1.15 7.20 -51.93 -0.37 0.77 16 4 C -0.50 -14.69 8.96 -34.44 -0.31 -15.00 16 5 H 0.09 3.08 7.00 -52.49 -0.37 2.71 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 8 Si 0.88 21.48 24.37 -169.99 -4.14 17.33 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 12 C 0.53 11.49 7.12 -10.98 -0.08 11.41 16 13 O -0.53 -13.69 15.13 5.56 0.08 -13.60 16 14 N -0.74 -11.91 4.24 -53.69 -0.23 -12.14 16 15 C 0.15 2.02 2.80 -67.81 -0.19 1.83 16 16 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 17 C -0.17 -2.16 5.74 -26.65 -0.15 -2.31 16 18 C 0.06 0.67 6.41 -3.83 -0.02 0.64 16 19 N -0.68 -6.78 6.50 -106.77 -0.69 -7.48 16 20 C 0.08 0.77 2.87 -67.72 -0.19 0.58 16 21 H 0.08 0.85 6.64 -51.93 -0.34 0.51 16 22 C -0.14 -1.13 9.47 37.16 0.35 -0.78 16 23 C -0.16 -1.63 5.02 -26.65 -0.13 -1.77 16 24 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.03 0.53 7.56 -51.93 -0.39 0.13 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.39 5.47 6.43 -40.82 -0.26 5.21 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 33 H 0.34 2.91 8.79 -39.29 -0.35 2.57 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 293.08 15.07 4.42 4.42 Total: -1.00 -32.63 293.08 -6.54 -39.17 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.04 Total: 5.87 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.72 Total: -6.44 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.15 Total: -46.75 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.63 -6.54 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340283827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.128 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds