Wall clock time and date at job start Sun Mar 29 2020 22:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.52090 * 324.87707 * 15 14 12 17 17 C 1.53116 * 109.52213 * 84.99719 * 15 14 12 18 18 C 1.53041 * 109.28013 * 62.25384 * 17 15 14 19 19 N 1.46847 * 109.52001 * 59.17567 * 18 17 15 20 20 C 1.46841 * 111.20045 * 298.25950 * 19 18 17 21 21 H 1.08994 * 109.46422 * 301.72569 * 20 19 18 22 22 C 1.52997 * 109.46369 * 181.75706 * 20 19 18 23 23 C 1.53044 * 109.52420 * 61.74483 * 20 19 18 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 29 29 H 1.08999 * 109.50449 * 182.19560 * 17 15 14 30 30 H 1.08998 * 109.50653 * 302.27349 * 17 15 14 31 31 H 1.08994 * 109.46401 * 179.19446 * 18 17 15 32 32 H 1.08999 * 109.46177 * 299.16403 * 18 17 15 33 33 H 1.00903 * 111.00157 * 62.35991 * 19 18 17 34 34 H 1.09007 * 109.46936 * 60.00217 * 22 20 19 35 35 H 1.09003 * 109.47614 * 179.97438 * 22 20 19 36 36 H 1.09002 * 109.47564 * 299.99961 * 22 20 19 37 37 H 1.08994 * 109.50499 * 180.88114 * 23 20 19 38 38 H 1.09000 * 109.50157 * 60.75581 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 1 3.1947 -1.3316 -3.4632 17 6 1.2502 -2.0954 -3.9958 18 6 -0.1374 -1.5349 -4.3159 19 7 -0.0413 -0.6030 -5.4466 20 6 0.8230 0.5388 -5.1218 21 1 0.4292 1.0548 -4.2462 22 6 0.8600 1.5040 -6.3083 23 6 2.2393 0.0402 -4.8257 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 1.1487 0.5386 -2.5436 29 1 1.6343 -2.6331 -4.8626 30 1 1.1816 -2.7755 -3.1467 31 1 -0.8086 -2.3535 -4.5758 32 1 -0.5267 -1.0092 -3.4440 33 1 0.2807 -1.0753 -6.2781 34 1 -0.1486 1.8600 -6.5187 35 1 1.5012 2.3519 -6.0672 36 1 1.2534 0.9882 -7.1843 37 1 2.8768 0.8863 -4.5694 38 1 2.6389 -0.4640 -5.7056 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340283827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:06 Heat of formation + Delta-G solvation = -72.479031 kcal Electronic energy + Delta-G solvation = -18151.458367 eV Core-core repulsion = 15413.094183 eV Total energy + Delta-G solvation = -2738.364185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29928 -39.45356 -35.82283 -35.26847 -33.48790 -33.14434 -31.08136 -27.93426 -27.12713 -25.13455 -24.16944 -22.53150 -21.60944 -20.44222 -18.81683 -17.95746 -17.13592 -16.56942 -16.51291 -15.87033 -15.83445 -15.30608 -15.00001 -14.66760 -14.40893 -14.22272 -13.92495 -13.45006 -13.41539 -13.01574 -12.79375 -12.76083 -12.55632 -12.37486 -12.15302 -11.90095 -11.75739 -11.59536 -11.47626 -11.23655 -10.78841 -10.45050 -10.02802 -9.26983 -8.28221 -6.36106 1.32309 1.38817 1.50160 1.85994 2.32795 2.36088 3.05383 3.31291 3.71819 3.88194 3.89130 4.09855 4.12268 4.35852 4.38118 4.41819 4.56984 4.59281 4.70044 4.74126 4.83755 4.90667 4.96270 4.97430 5.03421 5.11292 5.17137 5.28381 5.42061 5.42913 5.51711 5.63746 6.10055 6.25463 6.55287 6.66382 6.84142 7.25472 7.50461 8.89663 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.006386 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.391912 B = 4383.606782 C = 4673.646113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.009 4.009 3 H 0.067 0.933 4 C -0.521 4.521 5 H 0.028 0.972 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.261 1.261 10 H -0.299 1.299 11 H -0.230 1.230 12 C 0.528 3.472 13 O -0.585 6.585 14 N -0.715 5.715 15 C 0.140 3.860 16 H 0.055 0.945 17 C -0.163 4.163 18 C 0.066 3.934 19 N -0.676 5.676 20 C 0.081 3.919 21 H 0.074 0.926 22 C -0.138 4.138 23 C -0.147 4.147 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.267 0.733 28 H 0.408 0.592 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.348 0.652 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 7.177 -21.912 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 H 0.085 0.915 4 C -0.559 4.559 5 H 0.046 0.954 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.227 1.227 11 H -0.154 1.154 12 C 0.317 3.683 13 O -0.464 6.464 14 N -0.369 5.369 15 C 0.035 3.965 16 H 0.073 0.927 17 C -0.203 4.203 18 C -0.064 4.064 19 N -0.305 5.305 20 C -0.030 4.030 21 H 0.092 0.908 22 C -0.195 4.195 23 C -0.186 4.186 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.557 6.803 -21.530 23.512 hybrid contribution 0.793 -0.280 1.029 1.329 sum -5.764 6.523 -20.501 22.272 Atomic orbital electron populations 1.21993 0.94468 1.01543 1.01419 1.19265 0.95386 0.97407 0.91053 0.91484 1.21094 1.31612 1.12802 0.90421 0.95389 1.26052 0.97472 1.00770 0.94792 1.70084 1.47694 1.42826 0.98734 0.85693 0.78748 0.78988 0.78067 1.18633 1.22668 1.15357 1.21037 0.78328 0.83572 0.85410 1.90563 1.39801 1.28687 1.87371 1.46043 1.54169 1.32269 1.04435 1.20970 0.97117 0.93437 0.84995 0.92678 1.22569 0.98405 0.97798 1.01549 1.21877 0.94417 0.95815 0.94312 1.60757 1.53359 1.10452 1.05982 1.21617 0.89447 0.92390 0.99506 0.90752 1.21746 1.02638 0.98448 0.96710 1.22528 0.99957 0.99246 0.96889 0.93572 0.93609 0.89889 0.92393 0.75463 0.89684 0.94225 0.89845 0.91850 0.83353 0.91827 0.91311 0.91808 0.90253 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.57 71.98 0.62 -4.66 16 2 C -0.01 -0.44 2.23 -12.29 -0.03 -0.47 16 3 H 0.07 2.89 7.20 -2.39 -0.02 2.88 16 4 C -0.52 -31.63 8.96 25.60 0.23 -31.40 16 5 H 0.03 2.01 7.00 -2.91 -0.02 1.99 16 6 C 0.01 0.32 5.45 84.65 0.46 0.78 16 7 N -0.95 -61.92 13.96 21.45 0.30 -61.62 16 8 Si 0.96 43.48 24.37 68.60 1.67 45.16 16 9 H -0.26 -11.04 6.87 99.48 0.68 -10.35 16 10 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.23 -9.01 6.53 99.48 0.65 -8.36 16 12 C 0.53 23.27 7.12 87.66 0.62 23.89 16 13 O -0.59 -31.95 15.13 -3.04 -0.05 -32.00 16 14 N -0.71 -22.05 4.24 -442.16 -1.87 -23.93 16 15 C 0.14 3.72 2.80 45.07 0.13 3.85 16 16 H 0.05 1.81 7.58 -2.38 -0.02 1.79 16 17 C -0.16 -4.04 5.74 30.65 0.18 -3.86 16 18 C 0.07 1.35 6.41 86.33 0.55 1.91 16 19 N -0.68 -11.05 6.50 -491.70 -3.20 -14.25 16 20 C 0.08 1.25 2.87 44.94 0.13 1.38 16 21 H 0.07 1.27 6.64 -2.39 -0.02 1.25 16 22 C -0.14 -1.59 9.47 71.98 0.68 -0.91 16 23 C -0.15 -2.56 5.02 30.65 0.15 -2.40 16 24 H 0.05 1.81 3.27 -2.39 -0.01 1.80 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.08 2.34 7.56 -2.38 -0.02 2.33 16 27 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 28 H 0.41 10.08 6.43 -92.70 -0.60 9.49 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.49 7.69 -2.39 -0.02 1.47 16 33 H 0.35 4.62 8.79 -89.69 -0.79 3.83 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.18 293.08 0.17 -77.01 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.41 Total: 21.52 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 3.72 Total: -11.89 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -4.77 Total: -99.80 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -32.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.67 Total: 45.16 kcal Total: -77.18 0.17 -77.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340283827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.533 kcal (2) G-P(sol) polarization free energy of solvation -77.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds