Wall clock time and date at job start Sun Mar 29 2020 22:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47349 * 2 1 4 4 C 1.50701 * 109.47304 * 240.00244 * 2 1 3 5 5 H 1.07995 * 119.99879 * 240.00546 * 4 2 1 6 6 C 1.37881 * 120.00023 * 59.99526 * 4 2 1 7 7 N 1.31509 * 119.99763 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99780 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47003 * 90.00146 * 8 6 4 10 10 H 1.48506 * 109.46770 * 210.00307 * 8 6 4 11 11 H 1.48495 * 109.47030 * 330.00185 * 8 6 4 12 12 C 1.50692 * 109.47387 * 119.99985 * 2 1 3 13 13 O 1.21284 * 120.00480 * 119.99687 * 12 2 1 14 14 N 1.34779 * 119.99841 * 299.99999 * 12 2 1 15 15 C 1.46504 * 119.99802 * 179.97438 * 14 12 2 16 16 H 1.08995 * 109.57639 * 324.84612 * 15 14 12 17 17 C 1.53123 * 109.52025 * 85.00364 * 15 14 12 18 18 C 1.53039 * 109.31189 * 62.27133 * 17 15 14 19 19 N 1.46842 * 109.52266 * 59.15550 * 18 17 15 20 20 C 1.46849 * 111.20050 * 298.25785 * 19 18 17 21 21 H 1.08995 * 109.46417 * 301.72694 * 20 19 18 22 22 C 1.53005 * 109.46192 * 181.74928 * 20 19 18 23 23 C 1.53036 * 109.52274 * 61.74759 * 20 19 18 24 24 H 1.09001 * 109.46905 * 300.00353 * 1 2 3 25 25 H 1.09000 * 109.46907 * 59.99924 * 1 2 3 26 26 H 1.08995 * 109.47219 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99509 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00373 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.50371 * 302.30683 * 17 15 14 30 30 H 1.09003 * 109.50070 * 182.22843 * 17 15 14 31 31 H 1.08995 * 109.46501 * 179.17754 * 18 17 15 32 32 H 1.09009 * 109.45500 * 299.14277 * 18 17 15 33 33 H 1.00898 * 111.00242 * 62.36287 * 19 18 17 34 34 H 1.09003 * 109.46829 * 59.99889 * 22 20 19 35 35 H 1.08992 * 109.46889 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.47175 * 300.00706 * 22 20 19 37 37 H 1.09000 * 109.50390 * 60.75234 * 23 20 19 38 38 H 1.08997 * 109.50325 * 180.87997 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1947 -0.9408 3.6507 16 1 2.2291 -2.0141 3.4640 17 6 3.5986 -0.4363 3.9961 18 6 3.5344 1.0587 4.3172 19 7 2.6236 1.2790 5.4477 20 6 1.2585 0.8466 5.1221 21 1 0.9042 1.3909 4.2468 22 6 0.3362 1.1336 6.3087 23 6 1.2548 -0.6547 4.8252 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7094 1.1618 -3.4844 28 1 1.1488 0.5386 2.5436 29 1 4.2626 -0.5980 3.1469 30 1 3.9772 -0.9786 4.8625 31 1 4.5301 1.4173 4.5776 32 1 3.1693 1.6019 3.4454 33 1 2.9607 0.8171 6.2790 34 1 0.3380 2.2030 6.5199 35 1 -0.6770 0.8123 6.0673 36 1 0.6906 0.5898 7.1843 37 1 1.5960 -1.2005 5.7048 38 1 0.2442 -0.9723 4.5683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340283828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:08 Heat of formation + Delta-G solvation = -56.152856 kcal Electronic energy + Delta-G solvation = -18037.284944 eV Core-core repulsion = 15299.628716 eV Total energy + Delta-G solvation = -2737.656229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88345 -37.91378 -33.90173 -33.66498 -32.31510 -30.89973 -29.37770 -27.09087 -25.11644 -23.50185 -22.68316 -21.59747 -20.14722 -18.96006 -16.48765 -16.10336 -15.51930 -15.44701 -14.97850 -14.45872 -14.28571 -13.94925 -13.49420 -13.19265 -12.82225 -12.53139 -12.30739 -12.04603 -11.98041 -11.52033 -11.31122 -11.02374 -11.00201 -10.86369 -10.70299 -10.62711 -10.56527 -10.23905 -9.93602 -8.95646 -8.59330 -8.50401 -8.30726 -8.28242 -6.01408 -4.04357 3.34765 3.40350 3.47310 3.75841 3.92635 4.17634 4.49081 4.69033 4.85865 4.94159 5.11737 5.25361 5.31915 5.38523 5.49779 5.55771 5.64164 5.78240 5.91898 5.96670 6.03470 6.06578 6.18592 6.22622 6.39160 6.63255 6.84213 6.94681 7.00146 7.15011 7.34139 7.49646 7.77343 8.01217 8.17522 8.48190 9.04730 9.28176 9.61236 11.06229 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041054 B = 0.005734 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.866015 B = 4882.313252 C = 5125.912959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.740 5.740 15 C 0.145 3.855 16 H 0.081 0.919 17 C -0.167 4.167 18 C 0.058 3.942 19 N -0.680 5.680 20 C 0.080 3.920 21 H 0.082 0.918 22 C -0.143 4.143 23 C -0.158 4.158 24 H 0.011 0.989 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.393 0.607 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.336 0.664 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 1.480 16.168 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.394 5.394 15 C 0.040 3.960 16 H 0.099 0.901 17 C -0.208 4.208 18 C -0.071 4.071 19 N -0.309 5.309 20 C -0.030 4.030 21 H 0.100 0.900 22 C -0.201 4.201 23 C -0.198 4.198 24 H 0.030 0.970 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.228 0.772 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.244 1.539 15.766 15.843 hybrid contribution 0.128 -1.106 -0.771 1.355 sum -0.116 0.433 14.995 15.001 Atomic orbital electron populations 1.21735 0.96631 0.99729 1.00863 1.18867 0.94086 0.96803 0.89492 0.93112 1.21144 1.30892 1.12741 0.89027 0.90852 1.24953 0.95161 0.95064 0.99103 1.69873 1.37216 1.23077 1.23487 0.86458 0.79440 0.79244 0.82107 1.20701 1.21298 1.19778 1.21964 0.78334 0.84156 0.84554 1.90521 1.38048 1.26963 1.86792 1.46393 1.55184 1.32480 1.05384 1.20744 0.92345 0.97935 0.85017 0.90073 1.22610 0.98210 0.97874 1.02079 1.21979 0.96502 0.94480 0.94160 1.60757 1.01993 1.61908 1.06237 1.21571 0.89600 0.93065 0.98754 0.90015 1.21795 0.98754 1.02249 0.97305 1.22567 1.00772 0.98255 0.98225 0.97022 0.88864 0.95075 0.92997 0.77205 0.90608 0.91904 0.90943 0.90430 0.84715 0.91829 0.92111 0.92913 0.91051 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.84 7.11 -10.99 -0.08 11.76 16 13 O -0.55 -14.30 15.13 5.55 0.08 -14.21 16 14 N -0.74 -12.76 4.24 -53.68 -0.23 -12.99 16 15 C 0.15 2.14 2.81 -67.80 -0.19 1.95 16 16 H 0.08 1.38 7.59 -51.93 -0.39 0.98 16 17 C -0.17 -2.27 5.74 -26.65 -0.15 -2.42 16 18 C 0.06 0.71 6.41 -3.84 -0.02 0.69 16 19 N -0.68 -7.28 6.50 -106.76 -0.69 -7.97 16 20 C 0.08 0.84 2.87 -67.72 -0.19 0.65 16 21 H 0.08 0.96 6.64 -51.93 -0.34 0.61 16 22 C -0.14 -1.24 9.47 37.16 0.35 -0.88 16 23 C -0.16 -1.76 5.02 -26.65 -0.13 -1.90 16 24 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.39 6.11 6.43 -40.82 -0.26 5.85 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.09 7.69 -51.92 -0.40 0.69 16 33 H 0.34 3.11 8.79 -39.29 -0.35 2.77 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -30.54 299.92 -7.60 -38.15 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.17 Total: 5.73 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.72 Total: -5.47 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.29 Total: -45.70 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.54 -7.60 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340283828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.006 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds