Wall clock time and date at job start Sun Mar 29 2020 22:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47349 * 2 1 4 4 C 1.50701 * 109.47304 * 240.00244 * 2 1 3 5 5 H 1.07995 * 119.99879 * 240.00546 * 4 2 1 6 6 C 1.37881 * 120.00023 * 59.99526 * 4 2 1 7 7 N 1.31509 * 119.99763 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99780 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47003 * 90.00146 * 8 6 4 10 10 H 1.48506 * 109.46770 * 210.00307 * 8 6 4 11 11 H 1.48495 * 109.47030 * 330.00185 * 8 6 4 12 12 C 1.50692 * 109.47387 * 119.99985 * 2 1 3 13 13 O 1.21284 * 120.00480 * 119.99687 * 12 2 1 14 14 N 1.34779 * 119.99841 * 299.99999 * 12 2 1 15 15 C 1.46504 * 119.99802 * 179.97438 * 14 12 2 16 16 H 1.08995 * 109.57639 * 324.84612 * 15 14 12 17 17 C 1.53123 * 109.52025 * 85.00364 * 15 14 12 18 18 C 1.53039 * 109.31189 * 62.27133 * 17 15 14 19 19 N 1.46842 * 109.52266 * 59.15550 * 18 17 15 20 20 C 1.46849 * 111.20050 * 298.25785 * 19 18 17 21 21 H 1.08995 * 109.46417 * 301.72694 * 20 19 18 22 22 C 1.53005 * 109.46192 * 181.74928 * 20 19 18 23 23 C 1.53036 * 109.52274 * 61.74759 * 20 19 18 24 24 H 1.09001 * 109.46905 * 300.00353 * 1 2 3 25 25 H 1.09000 * 109.46907 * 59.99924 * 1 2 3 26 26 H 1.08995 * 109.47219 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99509 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00373 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.50371 * 302.30683 * 17 15 14 30 30 H 1.09003 * 109.50070 * 182.22843 * 17 15 14 31 31 H 1.08995 * 109.46501 * 179.17754 * 18 17 15 32 32 H 1.09009 * 109.45500 * 299.14277 * 18 17 15 33 33 H 1.00898 * 111.00242 * 62.36287 * 19 18 17 34 34 H 1.09003 * 109.46829 * 59.99889 * 22 20 19 35 35 H 1.08992 * 109.46889 * 180.02562 * 22 20 19 36 36 H 1.09002 * 109.47175 * 300.00706 * 22 20 19 37 37 H 1.09000 * 109.50390 * 60.75234 * 23 20 19 38 38 H 1.08997 * 109.50325 * 180.87997 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1947 -0.9408 3.6507 16 1 2.2291 -2.0141 3.4640 17 6 3.5986 -0.4363 3.9961 18 6 3.5344 1.0587 4.3172 19 7 2.6236 1.2790 5.4477 20 6 1.2585 0.8466 5.1221 21 1 0.9042 1.3909 4.2468 22 6 0.3362 1.1336 6.3087 23 6 1.2548 -0.6547 4.8252 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.7094 1.1618 -3.4844 28 1 1.1488 0.5386 2.5436 29 1 4.2626 -0.5980 3.1469 30 1 3.9772 -0.9786 4.8625 31 1 4.5301 1.4173 4.5776 32 1 3.1693 1.6019 3.4454 33 1 2.9607 0.8171 6.2790 34 1 0.3380 2.2030 6.5199 35 1 -0.6770 0.8123 6.0673 36 1 0.6906 0.5898 7.1843 37 1 1.5960 -1.2005 5.7048 38 1 0.2442 -0.9723 4.5683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340283828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:07 Heat of formation + Delta-G solvation = -77.934386 kcal Electronic energy + Delta-G solvation = -18038.229462 eV Core-core repulsion = 15299.628716 eV Total energy + Delta-G solvation = -2738.600747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23294 -39.39899 -35.79753 -35.21964 -33.30515 -32.69363 -30.85438 -27.93793 -27.21443 -24.91104 -24.14027 -22.53259 -21.65656 -20.40405 -18.36698 -17.92357 -16.99110 -16.61643 -16.45016 -15.89298 -15.61916 -15.29452 -14.94419 -14.62006 -14.21728 -14.03888 -13.56965 -13.35111 -12.98771 -12.98569 -12.79342 -12.66973 -12.61134 -12.37158 -12.22680 -12.05208 -11.89404 -11.75219 -11.59148 -11.05789 -10.61240 -10.30133 -9.97826 -9.27569 -8.16227 -6.26747 1.39590 1.39972 1.52089 1.93427 2.34487 2.52982 3.13192 3.30485 3.72758 3.88038 3.89061 4.09304 4.31654 4.35599 4.42014 4.58054 4.71302 4.73542 4.82447 4.89399 4.93736 4.96202 4.96642 5.01808 5.11137 5.16104 5.27638 5.41192 5.48014 5.65476 5.74656 5.93018 6.08479 6.20265 6.56281 6.72624 6.85259 7.39082 7.55193 8.89633 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041054 B = 0.005734 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.866015 B = 4882.313252 C = 5125.912959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.522 3.478 13 O -0.588 6.588 14 N -0.718 5.718 15 C 0.139 3.861 16 H 0.057 0.943 17 C -0.161 4.161 18 C 0.066 3.934 19 N -0.676 5.676 20 C 0.080 3.920 21 H 0.068 0.932 22 C -0.137 4.137 23 C -0.146 4.146 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.349 0.651 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 1.893 17.890 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.312 3.688 13 O -0.468 6.468 14 N -0.371 5.371 15 C 0.034 3.966 16 H 0.076 0.924 17 C -0.202 4.202 18 C -0.064 4.064 19 N -0.306 5.306 20 C -0.030 4.030 21 H 0.086 0.914 22 C -0.195 4.195 23 C -0.186 4.186 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.889 1.988 17.539 17.673 hybrid contribution 0.326 -1.208 -1.249 1.768 sum -0.562 0.780 16.289 16.318 Atomic orbital electron populations 1.21544 0.95086 0.99349 1.01652 1.18803 0.95329 0.95797 0.89860 0.94416 1.21275 1.31596 1.12682 0.91177 0.93489 1.25606 0.95201 0.95743 1.01438 1.69950 1.37240 1.23519 1.24315 0.85590 0.78602 0.78552 0.79103 1.19919 1.19875 1.20462 1.21505 0.78095 0.83558 0.85685 1.90497 1.40008 1.28750 1.87544 1.46121 1.54007 1.32274 1.04711 1.20985 0.94251 0.96323 0.85040 0.92445 1.22562 0.96589 0.99393 1.01633 1.21860 0.97538 0.92912 0.94116 1.60733 1.01778 1.62047 1.05993 1.21600 0.89869 0.92160 0.99360 0.91360 1.21740 0.98574 1.02457 0.96685 1.22520 0.99861 0.99150 0.97041 0.93126 0.91064 0.95882 0.92580 0.75890 0.94132 0.89389 0.89661 0.92580 0.83222 0.91897 0.91370 0.91547 0.88719 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.87 71.98 0.64 -4.83 16 2 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 3 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 4 C -0.53 -31.20 8.37 25.60 0.21 -30.98 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.71 11.32 21.45 0.24 -51.47 16 8 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.52 24.36 7.11 87.65 0.62 24.99 16 13 O -0.59 -31.94 15.13 -3.04 -0.05 -31.99 16 14 N -0.72 -24.62 4.24 -442.13 -1.88 -26.50 16 15 C 0.14 3.97 2.81 45.07 0.13 4.09 16 16 H 0.06 1.95 7.59 -2.39 -0.02 1.93 16 17 C -0.16 -4.24 5.74 30.65 0.18 -4.07 16 18 C 0.07 1.51 6.41 86.33 0.55 2.06 16 19 N -0.68 -12.57 6.50 -491.68 -3.20 -15.77 16 20 C 0.08 1.46 2.87 44.94 0.13 1.59 16 21 H 0.07 1.44 6.64 -2.39 -0.02 1.43 16 22 C -0.14 -1.87 9.47 71.98 0.68 -1.19 16 23 C -0.15 -2.86 5.02 30.65 0.15 -2.70 16 24 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.40 12.16 6.43 -92.71 -0.60 11.56 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.54 7.69 -2.38 -0.02 1.52 16 33 H 0.35 5.17 8.79 -89.70 -0.79 4.38 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.40 299.92 0.53 -66.87 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.33 Total: 19.67 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 3.71 Total: -8.34 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.83 Total: -93.74 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.40 0.53 -66.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340283828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.065 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds