Wall clock time and date at job start Sun Mar 29 2020 23:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47018 * 2 1 4 4 C 1.50696 * 109.47144 * 239.99652 * 2 1 3 5 5 H 1.08002 * 119.99824 * 244.49772 * 4 2 1 6 6 C 1.37873 * 120.00265 * 64.50142 * 4 2 1 7 7 N 1.31518 * 120.00390 * 193.88575 * 6 4 2 8 8 Si 1.86803 * 119.99742 * 13.88672 * 6 4 2 9 9 H 1.48495 * 109.47272 * 95.03823 * 8 6 4 10 10 H 1.48503 * 109.46910 * 215.03804 * 8 6 4 11 11 H 1.48498 * 109.47266 * 335.03643 * 8 6 4 12 12 C 1.50696 * 109.47063 * 119.99595 * 2 1 3 13 13 O 1.21282 * 120.00276 * 99.74460 * 12 2 1 14 14 N 1.34780 * 120.00163 * 279.74547 * 12 2 1 15 15 C 1.46926 * 120.62917 * 355.42591 * 14 12 2 16 16 C 1.53194 * 108.77410 * 233.62898 * 15 14 12 17 17 C 1.53032 * 109.31248 * 305.36301 * 16 15 14 18 18 H 1.08997 * 109.46411 * 301.34164 * 17 16 15 19 19 N 1.46906 * 109.45887 * 181.38482 * 17 16 15 20 20 C 1.53047 * 109.53779 * 61.36906 * 17 16 15 21 21 H 1.09001 * 109.49615 * 178.68074 * 20 17 16 22 22 C 1.52995 * 109.49658 * 58.58272 * 20 17 16 23 23 C 1.46922 * 120.63286 * 175.44662 * 14 12 2 24 24 H 1.09000 * 109.47210 * 302.13064 * 1 2 3 25 25 H 1.08995 * 109.46782 * 62.12948 * 1 2 3 26 26 H 1.08996 * 109.46657 * 182.12719 * 1 2 3 27 27 H 0.96997 * 119.99557 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.58823 * 113.84442 * 15 14 12 29 29 H 1.09004 * 109.58492 * 353.41480 * 15 14 12 30 30 H 1.09002 * 109.49303 * 65.31831 * 16 15 14 31 31 H 1.08998 * 109.49503 * 185.41227 * 16 15 14 32 32 H 1.00899 * 110.99986 * 60.00136 * 19 17 16 33 33 H 1.00897 * 111.00167 * 183.95486 * 19 17 16 34 34 H 1.08998 * 109.47285 * 60.00386 * 22 20 17 35 35 H 1.09004 * 109.47077 * 180.02562 * 22 20 17 36 36 H 1.08996 * 109.47144 * 300.00090 * 22 20 17 37 37 H 1.09004 * 109.58745 * 6.58419 * 23 14 12 38 38 H 1.09002 * 109.59008 * 246.15722 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5921 -1.6290 -1.1329 6 6 1.7776 -0.1879 -2.4805 7 7 1.9670 -0.9255 -3.5528 8 14 1.1633 1.5680 -2.6514 9 1 2.3143 2.4733 -2.8979 10 1 0.2147 1.6518 -3.7908 11 1 0.4726 1.9746 -1.4013 12 6 2.0324 -0.7103 1.2305 13 8 2.4021 -1.8630 1.1568 14 7 2.0707 -0.0646 2.4129 15 6 1.7214 1.3599 2.4996 16 6 2.8698 2.1084 3.1835 17 6 3.1695 1.4516 4.5328 18 1 2.2738 1.4719 5.1536 19 7 4.2481 2.1871 5.2063 20 6 3.6032 0.0008 4.3107 21 1 3.8390 -0.4594 5.2703 22 6 4.8402 -0.0303 3.4109 23 6 2.4631 -0.7716 3.6396 24 1 -0.3633 0.5466 0.8703 25 1 -0.3633 0.4804 -0.9084 26 1 -0.3632 -1.0269 0.0381 27 1 1.7881 -0.5577 -4.4323 28 1 0.8091 1.4775 3.0844 29 1 1.5697 1.7605 1.4973 30 1 3.7579 2.0664 2.5530 31 1 2.5835 3.1483 3.3407 32 1 3.9858 3.1483 5.3655 33 1 4.5091 1.7358 6.0702 34 1 5.6502 0.5218 3.8875 35 1 5.1484 -1.0638 3.2526 36 1 4.6030 0.4287 2.4512 37 1 2.8008 -1.7774 3.3895 38 1 1.6113 -0.8279 4.3174 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341239594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:36 Heat of formation + Delta-G solvation = -63.175719 kcal Electronic energy + Delta-G solvation = -18475.985660 eV Core-core repulsion = 15738.024897 eV Total energy + Delta-G solvation = -2737.960763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.35758 -39.03632 -35.87361 -35.32695 -33.57241 -32.68829 -30.96588 -27.94669 -27.17020 -25.44487 -24.15347 -23.46764 -20.72067 -19.25030 -18.94647 -17.70687 -17.15074 -16.61299 -16.37926 -16.02355 -15.88565 -15.20083 -14.96956 -14.79491 -14.26588 -14.13454 -14.04361 -13.64508 -13.29249 -12.84213 -12.82233 -12.68138 -12.56968 -12.32857 -12.17705 -12.10656 -11.51721 -11.41503 -11.35572 -11.23572 -10.61481 -10.35721 -9.52594 -9.46047 -8.28325 -6.32129 1.37103 1.41164 1.51540 1.87425 2.18973 2.37681 3.05000 3.55533 3.68984 3.77147 4.05068 4.11477 4.21542 4.32735 4.41429 4.53045 4.61762 4.68839 4.73855 4.78978 4.80516 4.83350 4.89056 4.99997 5.07091 5.15217 5.21949 5.29905 5.48454 5.51167 5.57053 5.76815 6.25143 6.35083 6.56396 6.73658 6.80657 7.27622 7.48268 8.89851 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.007448 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.782813 B = 3758.594180 C = 4039.687558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.000 4.000 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.020 0.980 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.939 3.061 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.205 1.205 12 C 0.526 3.474 13 O -0.591 6.591 14 N -0.612 5.612 15 C 0.099 3.901 16 C -0.129 4.129 17 C 0.106 3.894 18 H 0.055 0.945 19 N -0.850 5.850 20 C -0.091 4.091 21 H 0.096 0.904 22 C -0.130 4.130 23 C 0.110 3.890 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.267 0.733 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.351 0.649 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 12.327 20.319 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.038 0.962 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.760 3.240 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.127 1.127 12 C 0.316 3.684 13 O -0.471 6.471 14 N -0.346 5.346 15 C -0.024 4.024 16 C -0.167 4.167 17 C -0.005 4.005 18 H 0.073 0.927 19 N -0.382 5.382 20 C -0.110 4.110 21 H 0.114 0.886 22 C -0.188 4.188 23 C -0.013 4.013 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.141 11.542 19.471 22.663 hybrid contribution -0.428 -0.096 -0.260 0.510 sum -1.569 11.446 19.210 22.417 Atomic orbital electron populations 1.22001 0.94339 1.00795 1.01809 1.19173 0.95468 0.96923 0.90545 0.91674 1.21007 1.35642 1.09070 0.90693 0.96191 1.26030 0.95009 1.02960 0.94626 1.70148 1.50941 1.38537 0.99119 0.86025 0.78925 0.78655 0.80396 1.20032 1.20949 1.12708 1.21183 0.75796 0.86292 0.85088 1.90541 1.49819 1.20818 1.85901 1.48205 1.67906 1.11734 1.06770 1.22052 0.98620 0.78735 1.02950 1.21985 0.98174 1.00127 0.96414 1.21159 0.92803 0.91953 0.94623 0.92719 1.58582 1.42288 1.06810 1.30545 1.21465 0.94319 0.96040 0.99224 0.88576 1.21632 0.98307 0.99744 0.99082 1.21696 0.97896 0.96210 0.85485 0.90602 0.92372 0.94826 0.92409 0.88664 0.89494 0.92574 0.88334 0.83513 0.83736 0.90779 0.95370 0.95032 0.92148 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.36 71.98 0.60 -4.72 16 2 C 0.00 0.02 1.34 -12.29 -0.02 0.00 16 3 H 0.07 2.76 4.99 -2.39 -0.01 2.75 16 4 C -0.53 -32.18 8.81 25.60 0.23 -31.95 16 5 H 0.02 1.44 7.15 -2.91 -0.02 1.42 16 6 C 0.01 0.63 5.36 84.65 0.45 1.09 16 7 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 8 Si 0.94 41.81 25.77 68.60 1.77 43.57 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.21 -7.52 5.36 99.48 0.53 -6.98 16 12 C 0.53 24.15 6.84 87.66 0.60 24.75 16 13 O -0.59 -33.28 15.09 -3.04 -0.05 -33.33 16 14 N -0.61 -20.20 2.41 -818.90 -1.97 -22.18 16 15 C 0.10 2.36 5.76 86.36 0.50 2.85 16 16 C -0.13 -2.56 5.31 30.67 0.16 -2.40 16 17 C 0.11 1.80 2.90 44.94 0.13 1.93 16 18 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 19 N -0.85 -11.76 8.55 -168.56 -1.44 -13.20 16 20 C -0.09 -2.01 2.85 -10.72 -0.03 -2.04 16 21 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 22 C -0.13 -3.70 8.56 71.98 0.62 -3.09 16 23 C 0.11 3.08 5.83 86.36 0.50 3.58 16 24 H 0.08 2.33 7.53 -2.39 -0.02 2.31 16 25 H 0.06 2.32 4.77 -2.39 -0.01 2.31 16 26 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 2.24 5.34 -2.38 -0.01 2.23 16 30 H 0.06 1.45 6.34 -2.39 -0.02 1.43 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.35 3.59 9.04 -89.69 -0.81 2.78 16 33 H 0.35 3.79 8.99 -89.70 -0.81 2.98 16 34 H 0.07 1.87 7.65 -2.39 -0.02 1.86 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.03 1.06 5.97 -2.39 -0.01 1.05 16 37 H 0.06 2.10 7.00 -2.39 -0.02 2.09 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -79.91 287.34 1.64 -78.28 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.72 Total: 18.03 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 3.74 Total: -9.99 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -3.11 Total: -96.56 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.05 Total: -33.33 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.77 Total: 43.57 kcal Total: -79.91 1.64 -78.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341239594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.100 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds