Wall clock time and date at job start Sun Mar 29 2020 22:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 5 5 H 1.08002 * 119.99794 * 119.99946 * 4 2 1 6 6 C 1.37876 * 119.99997 * 300.00290 * 4 2 1 7 7 N 1.31516 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47195 * 89.99983 * 8 6 4 10 10 H 1.48499 * 109.47159 * 209.99893 * 8 6 4 11 11 H 1.48507 * 109.47229 * 330.00160 * 8 6 4 12 12 C 1.50695 * 109.47381 * 239.99537 * 2 1 3 13 13 O 1.21274 * 120.00413 * 240.27350 * 12 2 1 14 14 N 1.34784 * 119.99635 * 60.00308 * 12 2 1 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 2 16 16 H 1.09009 * 109.50247 * 34.99558 * 15 14 12 17 17 C 1.53111 * 109.50506 * 155.07606 * 15 14 12 18 18 C 1.53128 * 109.15806 * 62.28813 * 17 15 14 19 19 C 1.53034 * 109.27549 * 57.65704 * 18 17 15 20 20 H 1.08991 * 109.46735 * 60.83673 * 19 18 17 21 21 C 1.52999 * 109.45895 * 180.80477 * 19 18 17 22 22 N 1.46852 * 109.52361 * 300.81492 * 19 18 17 23 23 C 1.46932 * 111.21500 * 61.74836 * 22 19 18 24 24 H 1.08998 * 109.47094 * 60.00117 * 1 2 3 25 25 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 0.96998 * 119.99718 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00044 * 0.02562 * 14 12 2 29 29 H 1.09003 * 109.52348 * 182.19287 * 17 15 14 30 30 H 1.08996 * 109.52460 * 302.38674 * 17 15 14 31 31 H 1.09000 * 109.50206 * 177.59627 * 18 17 15 32 32 H 1.08997 * 109.49853 * 297.71296 * 18 17 15 33 33 H 1.09006 * 109.47302 * 60.00067 * 21 19 18 34 34 H 1.09002 * 109.47452 * 179.97438 * 21 19 18 35 35 H 1.09004 * 109.47503 * 299.99770 * 21 19 18 36 36 H 1.00895 * 110.99933 * 297.65364 * 22 19 18 37 37 H 1.08999 * 109.51414 * 178.25847 * 23 22 19 38 38 H 1.09005 * 109.44966 * 58.26804 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3212 -1.1202 4.0081 9 1 3.6295 -0.5457 4.4125 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7121 12 6 2.0324 -0.7105 -1.2303 13 8 2.7255 -1.6994 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1956 -0.9403 -3.6507 16 1 2.2330 -2.0133 -3.4619 17 6 1.2526 -0.6601 -4.8239 18 6 1.2516 0.8422 -5.1202 19 6 2.6806 1.2981 -5.4237 20 1 3.0535 0.7662 -6.2988 21 6 2.6875 2.8028 -5.7008 22 7 3.5432 1.0090 -4.2709 23 6 3.5977 -0.4334 -3.9961 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7086 1.1613 3.4843 28 1 1.1495 0.5389 -2.5436 29 1 1.5943 -1.2048 -5.7041 30 1 0.2436 -0.9809 -4.5648 31 1 0.6149 1.0427 -5.9819 32 1 0.8731 1.3838 -4.2534 33 1 2.3142 3.3352 -4.8258 34 1 3.7053 3.1279 -5.9165 35 1 2.0480 3.0176 -6.5569 36 1 3.2411 1.5211 -3.4558 37 1 4.2680 -0.6191 -3.1569 38 1 3.9663 -0.9572 -4.8780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342229183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:54 Heat of formation + Delta-G solvation = -78.244281 kcal Electronic energy + Delta-G solvation = -18052.329503 eV Core-core repulsion = 15313.715318 eV Total energy + Delta-G solvation = -2738.614185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21929 -39.36727 -35.79192 -35.29748 -32.93250 -32.58219 -31.43931 -27.69445 -27.20014 -24.82903 -24.22266 -22.42408 -21.56180 -20.53231 -18.35689 -17.92445 -17.00454 -16.49234 -16.29843 -16.18712 -15.75491 -15.08156 -14.85735 -14.64674 -14.28515 -14.03676 -13.50662 -13.26196 -12.98185 -12.93943 -12.78303 -12.70409 -12.60289 -12.35745 -12.21099 -12.03599 -12.00252 -11.68816 -11.38322 -11.05268 -10.60865 -10.30138 -10.23527 -9.14042 -8.15970 -6.26161 1.39948 1.40524 1.52477 1.93889 2.34048 2.52350 3.13695 3.32050 3.74550 3.84989 4.01200 4.08769 4.31253 4.43683 4.50619 4.56508 4.65104 4.72686 4.83777 4.91642 4.95101 4.97958 4.98871 5.00810 5.12813 5.15722 5.33951 5.39586 5.48374 5.63461 5.74588 5.92675 6.15181 6.21004 6.40471 6.72925 6.85620 7.39694 7.55610 8.89843 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038681 B = 0.005743 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.697499 B = 4874.296279 C = 4998.732090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.523 3.477 13 O -0.586 6.586 14 N -0.719 5.719 15 C 0.103 3.897 16 H 0.063 0.937 17 C -0.116 4.116 18 C -0.149 4.149 19 C 0.080 3.920 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.685 5.685 23 C 0.056 3.944 24 H 0.050 0.950 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.336 0.664 37 H 0.046 0.954 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 3.310 -17.491 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.312 3.688 13 O -0.465 6.465 14 N -0.373 5.373 15 C -0.003 4.003 16 H 0.082 0.918 17 C -0.154 4.154 18 C -0.188 4.188 19 C -0.030 4.030 20 H 0.105 0.895 21 C -0.199 4.199 22 N -0.314 5.314 23 C -0.075 4.075 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.065 0.935 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.457 2.728 -17.669 17.884 hybrid contribution -0.723 -0.381 1.607 1.803 sum -1.181 2.347 -16.061 16.275 Atomic orbital electron populations 1.21543 0.95170 0.99292 1.01612 1.18800 0.95222 0.95890 0.89821 0.94229 1.21282 1.31520 1.12686 0.91189 0.93481 1.25591 0.95188 0.95770 1.01414 1.69945 1.37173 1.23618 1.24295 0.85602 0.78403 0.78751 0.79166 1.20016 1.19890 1.20448 1.21503 0.78042 0.83619 0.85637 1.90502 1.40063 1.28462 1.87492 1.46099 1.54111 1.32360 1.04681 1.21692 0.96079 0.97213 0.85334 0.91834 1.21791 0.99111 0.97776 0.96725 1.22293 0.98768 0.95010 1.02743 1.21705 0.90179 0.97389 0.93687 0.89471 1.21780 1.02382 0.93717 1.02010 1.60777 1.54874 1.06742 1.09020 1.22244 0.94844 0.89377 1.01066 0.93155 0.95985 0.91085 0.92605 0.75922 0.88772 0.91127 0.88925 0.92397 0.93134 0.92411 0.90367 0.84649 0.93530 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.87 71.98 0.64 -4.76 16 2 C 0.02 1.21 2.64 -12.29 -0.03 1.17 16 3 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 4 C -0.53 -30.93 8.37 25.60 0.21 -30.72 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -51.39 11.32 21.45 0.24 -51.15 16 8 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 C 0.52 23.93 7.12 87.65 0.62 24.55 16 13 O -0.59 -31.37 15.12 -3.01 -0.05 -31.42 16 14 N -0.72 -23.89 4.31 -442.29 -1.91 -25.79 16 15 C 0.10 2.90 2.81 45.04 0.13 3.02 16 16 H 0.06 2.10 7.58 -2.38 -0.02 2.09 16 17 C -0.12 -2.24 5.66 30.67 0.17 -2.06 16 18 C -0.15 -2.45 5.17 30.65 0.16 -2.29 16 19 C 0.08 1.43 3.03 44.94 0.14 1.56 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.14 -2.19 9.47 71.98 0.68 -1.51 16 22 N -0.69 -16.69 6.49 -491.48 -3.19 -19.88 16 23 C 0.06 1.53 6.22 86.31 0.54 2.06 16 24 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 25 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.40 11.58 6.44 -92.71 -0.60 10.98 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.04 6.68 -2.39 -0.02 1.03 16 33 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.34 8.98 8.24 -89.70 -0.74 8.24 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -66.36 299.96 0.55 -65.81 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.29 Total: 22.44 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 3.71 Total: -7.42 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -4.85 Total: -96.82 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.36 0.55 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342229183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.430 kcal (2) G-P(sol) polarization free energy of solvation -66.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds