Wall clock time and date at job start Sun Mar 29 2020 22:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 C 1.50707 * 109.46672 * 120.00013 * 2 1 3 13 13 O 1.21282 * 119.99521 * 120.00502 * 12 2 1 14 14 N 1.34765 * 120.00198 * 300.00070 * 12 2 1 15 15 C 1.46506 * 120.00059 * 180.02562 * 14 12 2 16 16 H 1.08989 * 109.50063 * 34.92020 * 15 14 12 17 17 C 1.53120 * 109.50358 * 155.00019 * 15 14 12 18 18 C 1.53119 * 109.16012 * 62.28263 * 17 15 14 19 19 C 1.53032 * 109.27803 * 57.66050 * 18 17 15 20 20 H 1.08993 * 109.46974 * 60.82719 * 19 18 17 21 21 C 1.53004 * 109.46406 * 180.80607 * 19 18 17 22 22 N 1.46850 * 109.51937 * 300.81262 * 19 18 17 23 23 C 1.46850 * 111.19763 * 61.74831 * 22 19 18 24 24 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 25 25 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 26 26 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00275 * 359.97438 * 14 12 2 29 29 H 1.09001 * 109.52399 * 182.19073 * 17 15 14 30 30 H 1.09000 * 109.51984 * 302.38111 * 17 15 14 31 31 H 1.09004 * 109.49963 * 177.59457 * 18 17 15 32 32 H 1.08995 * 109.50580 * 297.71264 * 18 17 15 33 33 H 1.08994 * 109.47309 * 59.98791 * 21 19 18 34 34 H 1.08998 * 109.47306 * 180.02562 * 21 19 18 35 35 H 1.09005 * 109.46667 * 299.99612 * 21 19 18 36 36 H 1.00903 * 111.00303 * 297.64667 * 22 19 18 37 37 H 1.08996 * 109.46362 * 178.24417 * 23 22 19 38 38 H 1.08999 * 109.46295 * 58.27019 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8281 -0.4192 -5.2204 11 1 3.8077 -1.1190 -4.0077 12 6 2.0323 -0.7105 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7066 -0.2501 2.4546 15 6 2.1954 -0.9404 3.6508 16 1 3.1941 -1.3336 3.4614 17 6 2.2469 0.0429 4.8233 18 6 0.8313 0.5453 5.1205 19 6 -0.0751 -0.6493 5.4256 20 1 0.3027 -1.1778 6.3007 21 6 -1.4957 -0.1535 5.7035 22 7 -0.0914 -1.5597 4.2735 23 6 1.2493 -2.0920 3.9984 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7097 1.1618 -3.4844 28 1 1.1493 0.5388 2.5436 29 1 2.6471 -0.4603 5.7035 30 1 2.8858 0.8869 4.5631 31 1 0.8555 1.2130 5.9817 32 1 0.4463 1.0824 4.2537 33 1 -1.8736 0.3755 4.8287 34 1 -2.1414 -1.0043 5.9213 35 1 -1.4839 0.5216 6.5592 36 1 -0.4741 -1.1046 3.4583 37 1 1.1992 -2.7866 3.1598 38 1 1.6209 -2.6137 4.8803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342229184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:56 Heat of formation + Delta-G solvation = -56.904442 kcal Electronic energy + Delta-G solvation = -18111.733440 eV Core-core repulsion = 15374.044620 eV Total energy + Delta-G solvation = -2737.688820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87862 -37.89629 -34.01301 -33.69828 -31.63995 -31.25077 -29.87956 -26.69353 -25.12298 -23.47144 -22.80407 -21.46474 -20.07951 -19.12775 -16.45128 -16.18229 -15.53955 -15.24242 -15.02333 -14.61644 -14.32823 -13.89549 -13.44683 -13.21260 -12.88765 -12.51405 -12.15968 -12.02392 -11.83243 -11.55553 -11.45347 -11.10908 -11.00145 -10.85100 -10.71975 -10.68529 -10.38820 -10.24134 -9.94069 -8.98142 -8.83587 -8.59097 -8.30848 -8.00495 -6.02032 -4.05051 3.37305 3.39574 3.45121 3.73222 3.88866 4.32091 4.48727 4.67964 4.77568 4.90337 5.15816 5.29582 5.31191 5.32045 5.52269 5.59621 5.67675 5.77419 5.87351 5.92074 5.98081 6.11464 6.12699 6.19240 6.35919 6.61353 6.82430 6.93285 7.04929 7.19769 7.46688 7.48571 7.76723 8.00011 8.15842 8.45869 9.03674 9.25784 9.60530 11.05568 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040475 B = 0.005865 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.618140 B = 4773.008045 C = 5021.482175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.742 5.742 15 C 0.106 3.894 16 H 0.086 0.914 17 C -0.125 4.125 18 C -0.154 4.154 19 C 0.081 3.919 20 H 0.078 0.922 21 C -0.145 4.145 22 N -0.679 5.679 23 C 0.049 3.951 24 H 0.009 0.991 25 H 0.093 0.907 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.392 0.608 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.344 0.656 37 H 0.082 0.918 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 1.133 15.799 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.397 5.397 15 C -0.001 4.001 16 H 0.104 0.896 17 C -0.163 4.163 18 C -0.193 4.193 19 C -0.029 4.029 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.309 5.309 23 C -0.082 4.082 24 H 0.028 0.972 25 H 0.111 0.889 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.227 0.773 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.163 0.837 37 H 0.100 0.900 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.532 -0.045 15.927 16.127 hybrid contribution 0.534 0.859 -1.150 1.531 sum -1.998 0.813 14.777 14.933 Atomic orbital electron populations 1.21731 0.96545 0.99818 1.00784 1.18861 0.94121 0.96740 0.89471 0.93230 1.21103 1.31100 1.12657 0.89019 0.90875 1.24952 0.95105 0.95084 0.99109 1.69862 1.37123 1.23104 1.23610 0.86506 0.79259 0.79731 0.81635 1.20187 1.21396 1.20233 1.21977 0.78275 0.84252 0.84507 1.90525 1.37902 1.26888 1.86741 1.46401 1.55454 1.32372 1.05454 1.21497 0.99638 0.93676 0.85305 0.89626 1.21822 0.97158 0.99427 0.97927 1.22313 0.96049 0.99033 1.01939 1.21584 0.95158 0.91496 0.94687 0.90430 1.21801 0.95981 1.01081 1.01397 1.60734 1.22317 1.39207 1.08618 1.22366 0.87844 0.96451 1.01555 0.97155 0.88879 0.94917 0.92937 0.77340 0.90920 0.91355 0.91441 0.91787 0.92626 0.91926 0.92418 0.83719 0.89963 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.50 -14.25 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.20 6.75 -52.48 -0.35 1.85 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.26 11.32 55.43 0.63 -24.64 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 11.68 7.12 -10.99 -0.08 11.60 16 13 O -0.54 -14.06 15.12 5.56 0.08 -13.97 16 14 N -0.74 -12.54 4.31 -53.73 -0.23 -12.77 16 15 C 0.11 1.54 2.81 -67.84 -0.19 1.35 16 16 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 17 C -0.13 -1.39 5.66 -26.61 -0.15 -1.54 16 18 C -0.15 -1.55 5.17 -26.65 -0.14 -1.68 16 19 C 0.08 0.85 3.03 -67.72 -0.21 0.64 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.14 -1.34 9.47 37.16 0.35 -0.99 16 22 N -0.68 -8.79 6.49 -106.76 -0.69 -9.49 16 23 C 0.05 0.69 6.22 -3.83 -0.02 0.66 16 24 H 0.01 0.18 7.56 -51.93 -0.39 -0.21 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.39 5.94 6.44 -40.82 -0.26 5.67 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.68 6.68 -51.93 -0.35 0.34 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.34 4.80 8.24 -39.29 -0.32 4.48 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -30.06 299.96 -7.62 -37.68 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.17 Total: 6.86 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.73 Total: -5.14 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.30 Total: -46.89 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.06 -7.62 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342229184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.225 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds