Wall clock time and date at job start Sun Mar 29 2020 22:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.21283 * 120.00011 * 120.00264 * 12 2 1 14 14 N 1.34775 * 120.00072 * 299.99711 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 H 1.09004 * 109.50235 * 325.07991 * 15 14 12 17 17 C 1.53119 * 109.50748 * 205.00438 * 15 14 12 18 18 C 1.53118 * 109.16423 * 182.40354 * 17 15 14 19 19 C 1.53043 * 109.27754 * 57.65023 * 18 17 15 20 20 H 1.09001 * 109.46170 * 60.83788 * 19 18 17 21 21 C 1.52994 * 109.46098 * 180.80383 * 19 18 17 22 22 N 1.46847 * 109.52040 * 300.82268 * 19 18 17 23 23 C 1.46846 * 111.20059 * 61.74350 * 22 19 18 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 29 29 H 1.09003 * 109.51795 * 302.31077 * 17 15 14 30 30 H 1.09001 * 109.52329 * 62.49005 * 17 15 14 31 31 H 1.08998 * 109.50172 * 177.59179 * 18 17 15 32 32 H 1.08998 * 109.50221 * 297.71369 * 18 17 15 33 33 H 1.08998 * 109.47067 * 60.00158 * 21 19 18 34 34 H 1.08994 * 109.47238 * 179.97438 * 21 19 18 35 35 H 1.08996 * 109.47121 * 300.00250 * 21 19 18 36 36 H 1.00904 * 110.99166 * 185.83931 * 22 19 18 37 37 H 1.08999 * 109.46519 * 178.23709 * 23 22 19 38 38 H 1.09001 * 109.46449 * 58.26995 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1953 -0.9400 3.6509 16 1 2.2339 -2.0128 3.4618 17 6 1.2511 -0.6613 4.8236 18 6 1.8009 -1.3364 6.0831 19 6 3.2133 -0.8158 6.3598 20 1 3.1777 0.2612 6.5237 21 6 3.7746 -1.5026 7.6063 22 7 4.0779 -1.1073 5.2092 23 6 3.5961 -0.4310 3.9981 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7173 1.1669 -3.4844 28 1 1.1487 0.5387 2.5435 29 1 1.1815 0.4141 4.9875 30 1 0.2624 -1.0609 4.5981 31 1 1.1556 -1.1060 6.9307 32 1 1.8339 -2.4154 5.9327 33 1 3.8098 -2.5797 7.4429 34 1 4.7806 -1.1323 7.8033 35 1 3.1334 -1.2856 8.4606 36 1 5.0361 -0.8593 5.4051 37 1 4.2742 -0.6408 3.1708 38 1 3.5588 0.6442 4.1730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342229186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:00 Heat of formation + Delta-G solvation = -56.446136 kcal Electronic energy + Delta-G solvation = -17665.918029 eV Core-core repulsion = 14928.249083 eV Total energy + Delta-G solvation = -2737.668946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50026 -37.97885 -34.28935 -33.67609 -31.88110 -31.22709 -29.93528 -26.37470 -25.09448 -23.69400 -22.66194 -21.29876 -19.91262 -19.12142 -16.86566 -16.10415 -15.66248 -15.28544 -14.78745 -14.38542 -14.18734 -14.01664 -13.57919 -13.34342 -12.90731 -12.49692 -12.42151 -12.14015 -12.00628 -11.52759 -11.17184 -11.02008 -10.99331 -10.74359 -10.66945 -10.55519 -10.36074 -10.20854 -9.91931 -8.92563 -8.59340 -8.53135 -8.32384 -8.27296 -6.00164 -4.02875 3.34555 3.41974 3.50678 3.75208 3.80779 4.30989 4.51402 4.69291 4.80891 4.88165 5.13899 5.29151 5.33537 5.42671 5.48576 5.54117 5.61340 5.75830 5.80565 5.91014 5.99410 6.03314 6.20304 6.29566 6.48555 6.65670 6.86351 6.95873 6.97167 7.23236 7.34761 7.51623 7.79147 8.03258 8.19673 8.50907 9.07050 9.31225 9.62888 11.07587 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051881 B = 0.004938 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.565116 B = 5668.483659 C = 5976.166687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.543 6.543 14 N -0.744 5.744 15 C 0.148 3.852 16 H 0.090 0.910 17 C -0.128 4.128 18 C -0.108 4.108 19 C 0.080 3.920 20 H 0.035 0.965 21 C -0.145 4.145 22 N -0.682 5.682 23 C 0.050 3.950 24 H 0.031 0.969 25 H 0.011 0.989 26 H 0.092 0.908 27 H 0.259 0.741 28 H 0.394 0.606 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.342 0.658 37 H 0.081 0.919 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 0.449 17.721 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.418 6.418 14 N -0.397 5.397 15 C 0.042 3.958 16 H 0.108 0.892 17 C -0.166 4.166 18 C -0.146 4.146 19 C -0.030 4.030 20 H 0.053 0.947 21 C -0.203 4.203 22 N -0.315 5.315 23 C -0.080 4.080 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.228 0.772 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.160 0.840 37 H 0.100 0.900 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.121 -0.771 17.324 17.378 hybrid contribution 0.277 1.035 -0.596 1.227 sum 1.398 0.265 16.728 16.788 Atomic orbital electron populations 1.21730 0.96591 0.99782 1.00837 1.18886 0.94144 0.96795 0.89511 0.93111 1.21202 1.30799 1.12655 0.89005 0.90716 1.24953 0.95176 0.95075 0.99119 1.69882 1.37361 1.23150 1.23361 0.86412 0.78634 0.79789 0.82512 1.19541 1.21074 1.21097 1.21975 0.78410 0.84226 0.84508 1.90540 1.37824 1.26766 1.86704 1.46339 1.55200 1.32663 1.05519 1.20728 0.91645 0.98797 0.84593 0.89152 1.21864 0.99317 1.00733 0.94719 1.21571 0.94717 1.01355 0.96981 1.21513 0.93641 0.97166 0.90639 0.94694 1.21815 1.00475 1.01735 0.96292 1.60225 1.05507 1.62612 1.03145 1.22318 0.97927 0.95185 0.92569 0.95017 0.96959 0.88938 0.93082 0.77218 0.91985 0.91077 0.91425 0.90825 0.91663 0.92894 0.92256 0.84037 0.90031 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.70 2.64 -92.92 -0.24 0.45 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.31 8.37 -34.44 -0.29 -14.60 16 5 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.60 5.31 -17.82 -0.09 1.51 16 7 N -0.90 -25.43 11.33 55.43 0.63 -24.81 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 11.97 7.12 -10.98 -0.08 11.89 16 13 O -0.54 -14.39 15.12 5.56 0.08 -14.30 16 14 N -0.74 -13.12 4.97 -53.73 -0.27 -13.39 16 15 C 0.15 2.31 2.62 -67.85 -0.18 2.13 16 16 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 17 C -0.13 -1.53 5.47 -26.61 -0.15 -1.67 16 18 C -0.11 -1.12 5.37 -26.65 -0.14 -1.26 16 19 C 0.08 0.82 3.04 -67.72 -0.21 0.62 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 21 C -0.15 -1.21 9.43 37.15 0.35 -0.86 16 22 N -0.68 -8.40 6.50 -106.76 -0.69 -9.09 16 23 C 0.05 0.74 6.13 -3.84 -0.02 0.71 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.09 2.36 6.08 -51.93 -0.32 2.04 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.39 6.05 8.02 -40.82 -0.33 5.72 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.34 3.65 8.79 -39.29 -0.35 3.30 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -31.09 303.94 -7.75 -38.84 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.34 Total: 4.95 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.72 Total: -3.80 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.33 Total: -47.29 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.09 -7.75 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342229186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.611 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds