Wall clock time and date at job start Sun Mar 29 2020 23:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46581 * 2 1 4 4 C 1.50691 * 109.47135 * 239.99991 * 2 1 3 5 5 H 1.08004 * 119.99927 * 244.56754 * 4 2 1 6 6 C 1.37881 * 120.00275 * 64.56385 * 4 2 1 7 7 N 1.31515 * 119.99578 * 7.25166 * 6 4 2 8 8 Si 1.86798 * 120.00058 * 187.24395 * 6 4 2 9 9 H 1.48507 * 109.47166 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47380 * 300.00136 * 8 6 4 11 11 H 1.48499 * 109.47055 * 60.00445 * 8 6 4 12 12 C 1.50696 * 109.47067 * 119.99443 * 2 1 3 13 13 O 1.21282 * 119.99579 * 103.59340 * 12 2 1 14 14 N 1.34779 * 120.00310 * 283.59107 * 12 2 1 15 15 C 1.47073 * 120.88245 * 3.23235 * 14 12 2 16 16 C 1.53233 * 108.52298 * 128.81658 * 15 14 12 17 17 N 1.46893 * 109.34053 * 53.83105 * 16 15 14 18 18 C 1.46897 * 111.26921 * 296.89357 * 17 16 15 19 19 H 1.09002 * 109.49368 * 303.11865 * 18 17 16 20 20 C 1.52998 * 109.49547 * 183.06157 * 18 17 16 21 21 C 1.47083 * 120.87682 * 182.95207 * 14 12 2 22 22 H 1.08996 * 109.63167 * 350.89176 * 21 14 12 23 23 C 1.53001 * 109.62331 * 111.47605 * 21 14 12 24 24 H 1.08998 * 109.47176 * 180.52951 * 1 2 3 25 25 H 1.09000 * 109.47453 * 300.52405 * 1 2 3 26 26 H 1.09000 * 109.47439 * 60.52920 * 1 2 3 27 27 H 0.96998 * 120.00655 * 3.40609 * 7 6 4 28 28 H 1.09006 * 109.62763 * 248.52735 * 15 14 12 29 29 H 1.09000 * 109.62822 * 9.10605 * 15 14 12 30 30 H 1.09001 * 109.49582 * 173.78963 * 16 15 14 31 31 H 1.08999 * 109.49333 * 293.86733 * 16 15 14 32 32 H 1.00904 * 111.00099 * 172.74724 * 17 16 15 33 33 H 1.09003 * 109.47046 * 60.00576 * 20 18 17 34 34 H 1.09008 * 109.47140 * 179.97438 * 20 18 17 35 35 H 1.08994 * 109.47626 * 300.00419 * 20 18 17 36 36 H 1.08998 * 109.47568 * 60.00172 * 23 21 14 37 37 H 1.09011 * 109.47013 * 179.97438 * 23 21 14 38 38 H 1.08995 * 109.47371 * 299.99336 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5910 -1.6295 -1.1330 6 6 1.7786 -0.1870 -2.4805 7 7 1.2251 1.0003 -2.5963 8 14 2.2213 -1.1644 -4.0096 9 1 1.8501 -0.3865 -5.2190 10 1 3.6823 -1.4300 -4.0217 11 1 1.4839 -2.4533 -4.0040 12 6 2.0323 -0.7103 1.2305 13 8 2.4672 -1.8391 1.1439 14 7 1.9984 -0.0911 2.4272 15 6 1.4108 1.2499 2.5668 16 6 0.3969 1.2199 3.7154 17 7 1.0470 0.6976 4.9247 18 6 1.4893 -0.6902 4.7348 19 1 0.6373 -1.3079 4.4509 20 6 2.0901 -1.2176 6.0393 21 6 2.5425 -0.7411 3.6291 22 1 2.7866 -1.7795 3.4051 23 6 3.8002 -0.0009 4.0888 24 1 -0.3633 -1.0276 0.0095 25 1 -0.3634 0.5219 0.8852 26 1 -0.3634 0.5056 -0.8947 27 1 1.0406 1.5289 -1.8042 28 1 2.1959 1.9723 2.7903 29 1 0.9070 1.5272 1.6409 30 1 0.0325 2.2295 3.9055 31 1 -0.4399 0.5758 3.4452 32 1 0.4381 0.7768 5.7254 33 1 1.3375 -1.1810 6.8269 34 1 2.4178 -2.2477 5.8981 35 1 2.9426 -0.6004 6.3224 36 1 3.5487 1.0342 4.3196 37 1 4.2011 -0.4844 4.9798 38 1 4.5467 -0.0252 3.2950 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357458140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:00 Heat of formation + Delta-G solvation = -38.988867 kcal Electronic energy + Delta-G solvation = -18496.929879 eV Core-core repulsion = 15760.017937 eV Total energy + Delta-G solvation = -2736.911942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95938 -37.54648 -34.36940 -33.63659 -32.97987 -30.24938 -28.43491 -27.35813 -25.05098 -24.40940 -22.52926 -22.17369 -19.69890 -18.17504 -16.85867 -16.60722 -15.65184 -15.39120 -15.02443 -14.57295 -14.15993 -13.68429 -13.54533 -13.10974 -12.79056 -12.50727 -12.36649 -12.08325 -11.60769 -11.56210 -11.41910 -11.15357 -11.02060 -10.92857 -10.75222 -10.60807 -10.47202 -10.29458 -10.03916 -8.74330 -8.69785 -8.41130 -8.31823 -8.00226 -6.35022 -4.04939 3.48020 3.50199 3.53757 3.61085 3.70039 4.10097 4.56866 4.80601 4.96634 5.15271 5.22806 5.34972 5.36324 5.44642 5.50674 5.60756 5.69207 5.77283 5.84698 5.85894 6.01532 6.06254 6.10663 6.32576 6.34601 6.47977 6.55736 6.65573 6.92764 6.99135 7.15744 7.28012 7.38957 7.92494 8.23912 8.56815 8.89018 9.14697 9.63418 11.02006 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041232 B = 0.006655 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.915003 B = 4206.233652 C = 4544.327763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.018 3.982 3 H 0.040 0.960 4 C -0.582 4.582 5 H 0.066 0.934 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 1.069 2.931 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.529 3.471 13 O -0.543 6.543 14 N -0.624 5.624 15 C 0.110 3.890 16 C 0.044 3.956 17 N -0.681 5.681 18 C 0.075 3.925 19 H 0.039 0.961 20 C -0.146 4.146 21 C 0.144 3.856 22 H 0.094 0.906 23 C -0.152 4.152 24 H 0.042 0.958 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.268 0.732 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.339 0.661 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 1.431 15.578 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.003 4.003 3 H 0.058 0.942 4 C -0.621 4.621 5 H 0.084 0.916 6 C -0.183 4.183 7 N -0.550 5.550 8 Si 0.898 3.102 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.321 3.679 13 O -0.418 6.418 14 N -0.359 5.359 15 C -0.014 4.014 16 C -0.086 4.086 17 N -0.313 5.313 18 C -0.035 4.035 19 H 0.057 0.943 20 C -0.204 4.204 21 C 0.039 3.961 22 H 0.112 0.888 23 C -0.210 4.210 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.157 0.843 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.466 1.085 13.663 13.714 hybrid contribution -0.873 -0.382 1.839 2.071 sum -1.339 0.703 15.502 15.575 Atomic orbital electron populations 1.21886 0.97096 1.00597 1.00000 1.18952 0.93496 0.96734 0.91120 0.94214 1.21896 1.38376 1.11248 0.90531 0.91603 1.25813 0.94328 0.96871 1.01242 1.70837 1.40686 1.10126 1.33307 0.83534 0.76340 0.75132 0.75237 1.20856 1.21415 1.21376 1.21658 0.76167 0.86286 0.83834 1.90519 1.46434 1.19396 1.85471 1.48457 1.61582 1.17952 1.07939 1.21820 0.96021 0.84817 0.98735 1.22323 0.95495 1.00064 0.90721 1.60336 1.44940 1.20378 1.05668 1.21759 0.97212 0.88697 0.95865 0.94319 1.21876 1.01531 1.01180 0.95763 1.21002 0.92656 0.98417 0.83976 0.88792 1.22042 0.96723 1.01633 1.00580 0.93881 0.95767 0.91218 0.92137 0.91508 0.88414 0.89816 0.94727 0.84332 0.92802 0.91898 0.91096 0.91439 0.92067 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.53 37.16 0.32 -2.83 16 2 C 0.02 0.46 1.40 -92.93 -0.13 0.33 16 3 H 0.04 1.02 6.62 -51.93 -0.34 0.67 16 4 C -0.58 -16.99 8.31 -34.44 -0.29 -17.28 16 5 H 0.07 2.05 6.86 -52.48 -0.36 1.69 16 6 C 0.02 0.59 5.23 -17.82 -0.09 0.50 16 7 N -0.91 -26.78 12.88 55.43 0.71 -26.06 16 8 Si 1.07 25.85 29.91 -169.99 -5.08 20.76 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.53 12.64 6.91 -10.99 -0.08 12.56 16 13 O -0.54 -14.76 15.05 5.56 0.08 -14.67 16 14 N -0.62 -11.72 2.71 -165.19 -0.45 -12.16 16 15 C 0.11 1.71 5.51 -3.61 -0.02 1.69 16 16 C 0.04 0.55 6.69 -3.71 -0.02 0.53 16 17 N -0.68 -7.90 5.97 -106.72 -0.64 -8.54 16 18 C 0.08 0.97 2.86 -67.82 -0.19 0.78 16 19 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 20 C -0.15 -1.46 8.90 37.16 0.33 -1.13 16 21 C 0.14 2.32 2.82 -67.72 -0.19 2.13 16 22 H 0.09 1.72 7.05 -51.93 -0.37 1.35 16 23 C -0.15 -2.15 8.65 37.16 0.32 -1.83 16 24 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.02 0.46 6.19 -51.93 -0.32 0.13 16 26 H 0.07 1.70 6.28 -51.93 -0.33 1.37 16 27 H 0.27 7.65 6.09 -40.82 -0.25 7.40 16 28 H 0.07 0.99 7.65 -51.93 -0.40 0.60 16 29 H 0.10 1.62 4.44 -51.93 -0.23 1.39 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.34 3.18 8.77 -39.29 -0.34 2.83 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 35 H 0.07 0.69 6.35 -51.93 -0.33 0.36 16 36 H 0.07 0.94 7.09 -51.93 -0.37 0.57 16 37 H 0.06 0.72 6.38 -51.92 -0.33 0.39 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -32.51 290.43 -6.76 -39.27 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.72 Total: 1.57 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.05 Total: -4.54 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.37 Total: -46.76 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.67 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.51 -6.76 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357458140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.284 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds