Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47138 * 2 1 4 4 C 1.50696 * 109.47269 * 239.99532 * 2 1 3 5 5 H 1.07996 * 120.00364 * 239.99942 * 4 2 1 6 6 C 1.37884 * 119.99528 * 60.00128 * 4 2 1 7 7 N 1.31509 * 120.00220 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99576 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47153 * 60.00156 * 8 6 4 10 10 H 1.48504 * 109.46916 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46896 * 299.99756 * 8 6 4 12 12 C 1.50703 * 109.46904 * 119.99839 * 2 1 3 13 13 O 1.21277 * 120.00242 * 120.00097 * 12 2 1 14 14 N 1.34777 * 119.99772 * 299.99441 * 12 2 1 15 15 C 1.46497 * 119.99800 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47323 * 180.02562 * 15 14 12 17 17 H 1.09006 * 110.89872 * 57.41625 * 16 15 14 18 18 C 1.54906 * 110.99217 * 293.54952 * 16 15 14 19 19 N 1.47840 * 104.79510 * 204.83461 * 18 16 15 20 20 C 1.47446 * 108.56768 * 24.09731 * 19 18 16 21 21 C 1.54318 * 107.23303 * 359.00691 * 20 19 18 22 22 H 1.09003 * 110.70170 * 96.09788 * 21 20 19 23 23 C 1.53000 * 110.70507 * 219.33434 * 21 20 19 24 24 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47216 * 300.00352 * 1 2 3 26 26 H 1.09002 * 109.47493 * 60.00191 * 1 2 3 27 27 H 0.96998 * 120.00077 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00485 * 0.02562 * 14 12 2 29 29 H 1.09000 * 109.47097 * 60.00644 * 15 14 12 30 30 H 1.08997 * 109.47418 * 300.00369 * 15 14 12 31 31 H 1.08998 * 110.36925 * 86.00429 * 18 16 15 32 32 H 1.08996 * 110.36967 * 323.66669 * 18 16 15 33 33 H 1.00901 * 111.00049 * 261.83124 * 19 18 16 34 34 H 1.08996 * 109.88895 * 118.41939 * 20 19 18 35 35 H 1.09001 * 109.88694 * 239.60335 * 20 19 18 36 36 H 1.08992 * 109.47083 * 58.54639 * 23 21 20 37 37 H 1.09005 * 109.46748 * 178.55280 * 23 21 20 38 38 H 1.08999 * 109.47106 * 298.54481 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8259 -0.4208 -5.2204 11 1 3.8063 -1.1211 -4.0080 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1954 -0.9400 3.6508 16 6 1.6849 -0.2191 4.9000 17 1 0.5961 -0.1663 4.9008 18 6 2.3091 1.1936 5.0195 19 7 2.2524 1.5105 6.4625 20 6 2.2054 0.2460 7.2194 21 6 2.2091 -0.9035 6.1898 22 1 3.2196 -1.2841 6.0408 23 6 1.2659 -2.0256 6.6285 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7089 1.1613 -3.4844 28 1 1.1488 0.5387 2.5436 29 1 3.2854 -0.9396 3.6506 30 1 1.8325 -1.9678 3.6510 31 1 1.7251 1.9159 4.4491 32 1 3.3427 1.1822 4.6737 33 1 1.4533 2.0888 6.6746 34 1 3.0797 0.1680 7.8656 35 1 1.2949 0.2054 7.8173 36 1 0.2571 -1.6289 6.7413 37 1 1.2645 -2.8140 5.8758 38 1 1.6046 -2.4333 7.5809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358070481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = -78.683531 kcal Electronic energy + Delta-G solvation = -17467.946286 eV Core-core repulsion = 14729.313054 eV Total energy + Delta-G solvation = -2738.633232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81296 -39.73029 -35.81879 -35.62490 -33.16440 -32.58815 -30.71556 -27.22417 -26.93871 -25.76649 -24.04322 -21.95269 -21.51496 -20.53439 -18.39223 -17.85688 -17.34397 -16.77559 -16.52006 -16.28893 -15.64246 -15.15843 -14.80394 -14.40977 -14.33711 -13.96172 -13.57923 -13.36067 -13.16884 -13.07025 -12.96689 -12.70329 -12.59318 -12.24420 -12.19543 -12.00394 -11.80160 -11.70767 -11.57558 -11.04673 -10.60042 -10.29767 -9.97554 -9.41163 -8.14798 -6.25115 1.41316 1.42769 1.51368 1.93515 2.34510 2.52872 3.14738 3.25481 3.55940 3.70018 3.87263 4.22071 4.31806 4.33535 4.42178 4.49617 4.64676 4.68114 4.75154 4.82466 4.87352 4.95089 4.96481 5.03666 5.08581 5.17345 5.25162 5.41740 5.50090 5.59392 5.75371 5.85857 5.94557 6.22128 6.50847 6.74098 6.86575 7.40249 7.54967 8.90788 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047977 B = 0.004683 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.473697 B = 5977.582360 C = 6195.211367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.590 6.590 14 N -0.723 5.723 15 C 0.136 3.864 16 C -0.117 4.117 17 H 0.095 0.905 18 C 0.053 3.947 19 N -0.694 5.694 20 C 0.054 3.946 21 C -0.104 4.104 22 H 0.074 0.926 23 C -0.140 4.140 24 H 0.021 0.979 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.349 0.651 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 1.256 19.028 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.470 6.470 14 N -0.376 5.376 15 C 0.012 3.988 16 C -0.138 4.138 17 H 0.113 0.887 18 C -0.077 4.077 19 N -0.323 5.323 20 C -0.075 4.075 21 C -0.124 4.124 22 H 0.092 0.908 23 C -0.197 4.197 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.567 0.803 18.929 19.010 hybrid contribution -0.639 -0.474 -1.247 1.479 sum -2.205 0.330 17.682 17.822 Atomic orbital electron populations 1.21548 0.94975 0.99362 1.01758 1.18811 0.95397 0.95938 0.89632 0.94037 1.21264 1.31682 1.12763 0.91228 0.93479 1.25586 0.95186 0.95747 1.01374 1.69933 1.37148 1.23506 1.24368 0.85664 0.78654 0.78740 0.78892 1.20204 1.19840 1.20240 1.21567 0.78182 0.83659 0.85723 1.90503 1.40078 1.28829 1.87612 1.45977 1.54324 1.32541 1.04788 1.21165 0.98199 0.95886 0.83558 1.22986 1.01226 0.96359 0.93182 0.88679 1.22889 1.00730 0.94662 0.89386 1.61655 1.48271 1.17093 1.05231 1.22713 1.02194 0.86868 0.95705 1.22359 1.00117 0.96397 0.93502 0.90795 1.21752 0.98945 0.97367 1.01643 0.95951 0.92867 0.91088 0.92577 0.75469 0.93295 0.92972 0.90254 0.91926 0.83484 0.90758 0.90983 0.91815 0.93202 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.87 71.98 0.64 -4.73 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.53 -31.11 8.37 25.60 0.21 -30.90 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.23 11.32 21.45 0.24 -50.99 16 8 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.52 24.08 7.15 87.66 0.63 24.70 16 13 O -0.59 -32.14 15.46 -3.02 -0.05 -32.19 16 14 N -0.72 -24.24 5.30 -463.07 -2.45 -26.70 16 15 C 0.14 3.89 5.12 86.38 0.44 4.33 16 16 C -0.12 -2.33 2.55 -9.41 -0.02 -2.35 16 17 H 0.09 1.71 8.04 -2.38 -0.02 1.69 16 18 C 0.05 1.04 6.74 86.77 0.59 1.63 16 19 N -0.69 -12.04 7.39 -504.45 -3.73 -15.76 16 20 C 0.05 0.82 7.18 86.65 0.62 1.44 16 21 C -0.10 -1.79 3.01 -9.61 -0.03 -1.81 16 22 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 23 C -0.14 -2.05 9.13 71.98 0.66 -1.39 16 24 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 26 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 27 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.41 11.32 7.75 -92.71 -0.72 10.60 16 29 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.49 8.00 -2.39 -0.02 1.47 16 33 H 0.35 4.75 8.91 -89.69 -0.80 3.95 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 0.85 7.82 -2.39 -0.02 0.83 16 36 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 37 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.67 306.87 -0.28 -67.95 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -0.47 Total: 16.75 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.15 Total: -6.34 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -5.94 Total: -93.45 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.67 -0.28 -67.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358070481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.735 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds