Wall clock time and date at job start Sun Mar 29 2020 23:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47334 * 2 1 4 4 C 1.50702 * 109.47063 * 120.00192 * 2 1 3 5 5 H 1.08003 * 119.99727 * 117.27352 * 4 2 1 6 6 C 1.37878 * 120.00142 * 297.27371 * 4 2 1 7 7 N 1.31509 * 120.00246 * 159.76424 * 6 4 2 8 8 Si 1.86802 * 119.99689 * 339.48579 * 6 4 2 9 9 H 1.48502 * 109.46899 * 180.27640 * 8 6 4 10 10 H 1.48501 * 109.47288 * 300.27070 * 8 6 4 11 11 H 1.48500 * 109.47318 * 60.27720 * 8 6 4 12 12 C 1.50698 * 109.47322 * 240.00179 * 2 1 3 13 13 O 1.21283 * 120.00310 * 269.70292 * 12 2 1 14 14 N 1.34784 * 120.00044 * 89.69472 * 12 2 1 15 15 C 1.47481 * 127.03045 * 5.09721 * 14 12 2 16 16 C 1.54006 * 107.08284 * 154.51183 * 15 14 12 17 17 H 1.09004 * 110.32660 * 120.29817 * 16 15 14 18 18 C 1.52991 * 110.32940 * 242.41339 * 16 15 14 19 19 N 1.46899 * 109.47251 * 293.54469 * 18 16 15 20 20 C 1.54620 * 105.04231 * 1.30702 * 16 15 14 21 21 H 1.08997 * 110.73894 * 263.50735 * 20 16 15 22 22 C 1.52999 * 110.74039 * 140.36531 * 20 16 15 23 23 C 1.48116 * 127.03314 * 184.77388 * 14 12 2 24 24 H 1.08999 * 109.47132 * 53.67750 * 1 2 3 25 25 H 1.08997 * 109.47681 * 173.67707 * 1 2 3 26 26 H 1.09004 * 109.47528 * 293.68315 * 1 2 3 27 27 H 0.97003 * 119.99725 * 354.75357 * 7 6 4 28 28 H 1.08996 * 109.91776 * 273.87323 * 15 14 12 29 29 H 1.08999 * 109.91394 * 34.96537 * 15 14 12 30 30 H 1.09003 * 109.47164 * 53.54977 * 18 16 15 31 31 H 1.09000 * 109.47519 * 173.54627 * 18 16 15 32 32 H 1.00903 * 110.99718 * 56.04871 * 19 18 16 33 33 H 1.00902 * 111.00317 * 180.02562 * 19 18 16 34 34 H 1.08999 * 109.47089 * 59.99716 * 22 20 16 35 35 H 1.08999 * 109.47665 * 179.97438 * 22 20 16 36 36 H 1.08997 * 109.47310 * 299.99907 * 22 20 16 37 37 H 1.09000 * 110.66283 * 337.78193 * 23 14 12 38 38 H 1.08998 * 110.65735 * 100.88881 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6163 -1.6136 1.1319 6 6 1.7462 -0.2076 2.4820 7 7 1.8189 -0.9892 3.5371 8 14 1.2628 1.5859 2.6797 9 1 1.0149 1.8764 4.1148 10 1 2.3612 2.4525 2.1819 11 1 0.0280 1.8547 1.8998 12 6 2.0323 -0.7104 -1.2305 13 8 2.2396 -1.9049 -1.1989 14 7 2.2511 -0.0182 -2.3661 15 6 2.1524 1.4419 -2.5494 16 6 3.0707 1.8129 -3.7287 17 1 2.4935 2.2843 -4.5243 18 6 4.1880 2.7466 -3.2591 19 7 3.6106 4.0334 -2.8485 20 6 3.6621 0.4695 -4.2149 21 1 4.6462 0.3004 -3.7779 22 6 3.7360 0.4313 -5.7426 23 6 2.6463 -0.5676 -3.6836 24 1 -0.3633 0.6087 -0.8280 25 1 -0.3634 -1.0213 -0.1132 26 1 -0.3634 0.4128 0.9411 27 1 1.9991 -1.9360 3.4278 28 1 1.1234 1.7186 -2.7788 29 1 2.4810 1.9527 -1.6443 30 1 4.7075 2.2951 -2.4138 31 1 4.8931 2.9084 -4.0744 32 1 2.9063 3.9034 -2.1377 33 1 4.3291 4.6683 -2.5342 34 1 4.3709 1.2438 -6.0960 35 1 4.1555 -0.5226 -6.0624 36 1 2.7348 0.5457 -6.1578 37 1 3.1186 -1.5431 -3.5675 38 1 1.7840 -0.6333 -4.3471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358262218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:55 Heat of formation + Delta-G solvation = -47.744008 kcal Electronic energy + Delta-G solvation = -18118.203931 eV Core-core repulsion = 15380.912337 eV Total energy + Delta-G solvation = -2737.291594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81749 -37.64012 -34.42997 -33.80288 -32.61211 -30.96781 -29.17665 -26.45879 -25.16912 -24.81982 -22.34612 -21.08153 -20.02588 -18.50730 -17.29655 -16.69096 -16.03895 -15.31086 -14.78066 -14.70926 -14.33632 -13.86800 -13.46677 -13.03553 -12.96020 -12.79964 -12.64151 -12.24991 -11.96739 -11.80865 -11.59801 -11.45852 -11.03884 -10.83873 -10.65159 -10.62400 -10.51657 -10.14713 -9.79858 -8.94942 -8.83690 -8.72641 -8.27822 -8.16024 -6.48451 -4.06120 3.31984 3.35639 3.51129 3.55257 3.57581 4.30041 4.46680 4.57055 4.57779 4.86529 5.11597 5.20415 5.27033 5.35994 5.43999 5.54390 5.60337 5.63362 5.73965 5.83086 5.89962 5.98621 6.05616 6.08510 6.24085 6.28454 6.45925 6.55541 6.70129 6.94335 6.99733 7.23617 7.28771 7.83798 8.24316 8.43475 8.96931 9.08397 9.60353 10.90983 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.007782 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.660920 B = 3597.044965 C = 4276.118190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.012 3.988 3 H 0.033 0.967 4 C -0.593 4.593 5 H 0.069 0.931 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 1.037 2.963 9 H -0.283 1.283 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.549 3.451 13 O -0.540 6.540 14 N -0.635 5.635 15 C 0.107 3.893 16 C -0.096 4.096 17 H 0.092 0.908 18 C 0.068 3.932 19 N -0.853 5.853 20 C -0.103 4.103 21 H 0.080 0.920 22 C -0.138 4.138 23 C 0.106 3.894 24 H 0.026 0.974 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.271 0.729 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.343 0.657 33 H 0.341 0.659 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 9.530 -16.107 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.010 4.010 3 H 0.051 0.949 4 C -0.631 4.631 5 H 0.087 0.913 6 C -0.171 4.171 7 N -0.531 5.531 8 Si 0.865 3.135 9 H -0.209 1.209 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.341 3.659 13 O -0.414 6.414 14 N -0.372 5.372 15 C -0.017 4.017 16 C -0.116 4.116 17 H 0.110 0.890 18 C -0.062 4.062 19 N -0.383 5.383 20 C -0.123 4.123 21 H 0.099 0.901 22 C -0.196 4.196 23 C -0.017 4.017 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.691 9.996 -15.563 18.574 hybrid contribution 0.809 -1.352 -0.224 1.591 sum 2.500 8.645 -15.787 18.172 Atomic orbital electron populations 1.22118 0.96583 1.00776 1.00402 1.19122 0.93736 0.96335 0.91823 0.94915 1.21873 1.38309 1.13274 0.89614 0.91297 1.25724 0.94100 1.05326 0.91962 1.70807 1.43592 1.06901 1.31847 0.84208 0.77018 0.75920 0.76391 1.20895 1.21112 1.19875 1.21243 0.75010 0.87254 0.82423 1.90565 1.51508 1.15887 1.83489 1.49120 1.71237 1.07241 1.09584 1.22066 0.99277 0.82152 0.98162 1.22227 0.96518 0.94971 0.97844 0.89001 1.21840 0.95807 0.89178 0.99424 1.58801 1.18468 1.12871 1.48180 1.22247 0.99517 0.94412 0.96083 0.90113 1.21716 1.02017 1.01842 0.94009 1.22318 0.96771 0.97846 0.84776 0.95490 0.93166 0.91649 0.91889 0.91778 0.91037 0.94984 0.90895 0.84414 0.84676 0.92335 0.92431 0.92368 0.90253 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.84 37.15 0.33 -2.81 16 2 C 0.01 0.29 1.89 -92.93 -0.18 0.11 16 3 H 0.03 0.75 5.37 -51.93 -0.28 0.47 16 4 C -0.59 -17.40 8.61 -34.44 -0.30 -17.70 16 5 H 0.07 2.29 7.34 -52.48 -0.39 1.91 16 6 C 0.03 1.00 5.24 -17.82 -0.09 0.91 16 7 N -0.90 -27.91 13.69 55.43 0.76 -27.15 16 8 Si 1.04 24.35 26.35 -169.99 -4.48 19.88 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -5.78 5.75 56.52 0.32 -5.45 16 12 C 0.55 12.95 6.94 -10.98 -0.08 12.88 16 13 O -0.54 -14.81 16.12 5.55 0.09 -14.72 16 14 N -0.63 -11.56 3.29 -169.99 -0.56 -12.12 16 15 C 0.11 1.54 5.87 -2.98 -0.02 1.52 16 16 C -0.10 -1.09 2.83 -89.25 -0.25 -1.34 16 17 H 0.09 0.96 7.86 -51.93 -0.41 0.55 16 18 C 0.07 0.73 5.97 -3.83 -0.02 0.71 16 19 N -0.85 -8.52 9.62 -10.37 -0.10 -8.62 16 20 C -0.10 -1.18 3.18 -88.93 -0.28 -1.47 16 21 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 22 C -0.14 -1.21 9.17 37.16 0.34 -0.87 16 23 C 0.11 1.57 6.54 -2.32 -0.02 1.56 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 1.48 4.75 -51.93 -0.25 1.23 16 27 H 0.27 8.52 8.73 -40.82 -0.36 8.16 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.06 5.60 -51.93 -0.29 0.77 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.34 3.49 7.64 -39.29 -0.30 3.19 16 33 H 0.34 2.88 9.08 -39.29 -0.36 2.52 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.08 1.30 7.82 -51.93 -0.41 0.89 16 38 H 0.06 0.85 8.02 -51.93 -0.42 0.44 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -33.59 299.28 -6.45 -40.04 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.11 Total: 4.69 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.56 Total: -6.51 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.10 Total: -47.89 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.48 Total: 19.88 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.59 -6.45 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358262218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.700 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds