Wall clock time and date at job start Sun Mar 29 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47334 * 2 1 4 4 C 1.50702 * 109.47063 * 120.00192 * 2 1 3 5 5 H 1.08003 * 119.99727 * 117.27352 * 4 2 1 6 6 C 1.37878 * 120.00142 * 297.27371 * 4 2 1 7 7 N 1.31509 * 120.00246 * 159.76424 * 6 4 2 8 8 Si 1.86802 * 119.99689 * 339.48579 * 6 4 2 9 9 H 1.48502 * 109.46899 * 180.27640 * 8 6 4 10 10 H 1.48501 * 109.47288 * 300.27070 * 8 6 4 11 11 H 1.48500 * 109.47318 * 60.27720 * 8 6 4 12 12 C 1.50698 * 109.47322 * 240.00179 * 2 1 3 13 13 O 1.21283 * 120.00310 * 269.70292 * 12 2 1 14 14 N 1.34784 * 120.00044 * 89.69472 * 12 2 1 15 15 C 1.47481 * 127.03045 * 5.09721 * 14 12 2 16 16 C 1.54006 * 107.08284 * 154.51183 * 15 14 12 17 17 H 1.09004 * 110.32660 * 120.29817 * 16 15 14 18 18 C 1.52991 * 110.32940 * 242.41339 * 16 15 14 19 19 N 1.46899 * 109.47251 * 293.54469 * 18 16 15 20 20 C 1.54620 * 105.04231 * 1.30702 * 16 15 14 21 21 H 1.08997 * 110.73894 * 263.50735 * 20 16 15 22 22 C 1.52999 * 110.74039 * 140.36531 * 20 16 15 23 23 C 1.48116 * 127.03314 * 184.77388 * 14 12 2 24 24 H 1.08999 * 109.47132 * 53.67750 * 1 2 3 25 25 H 1.08997 * 109.47681 * 173.67707 * 1 2 3 26 26 H 1.09004 * 109.47528 * 293.68315 * 1 2 3 27 27 H 0.97003 * 119.99725 * 354.75357 * 7 6 4 28 28 H 1.08996 * 109.91776 * 273.87323 * 15 14 12 29 29 H 1.08999 * 109.91394 * 34.96537 * 15 14 12 30 30 H 1.09003 * 109.47164 * 53.54977 * 18 16 15 31 31 H 1.09000 * 109.47519 * 173.54627 * 18 16 15 32 32 H 1.00903 * 110.99718 * 56.04871 * 19 18 16 33 33 H 1.00902 * 111.00317 * 180.02562 * 19 18 16 34 34 H 1.08999 * 109.47089 * 59.99716 * 22 20 16 35 35 H 1.08999 * 109.47665 * 179.97438 * 22 20 16 36 36 H 1.08997 * 109.47310 * 299.99907 * 22 20 16 37 37 H 1.09000 * 110.66283 * 337.78193 * 23 14 12 38 38 H 1.08998 * 110.65735 * 100.88881 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6163 -1.6136 1.1319 6 6 1.7462 -0.2076 2.4820 7 7 1.8189 -0.9892 3.5371 8 14 1.2628 1.5859 2.6797 9 1 1.0149 1.8764 4.1148 10 1 2.3612 2.4525 2.1819 11 1 0.0280 1.8547 1.8998 12 6 2.0323 -0.7104 -1.2305 13 8 2.2396 -1.9049 -1.1989 14 7 2.2511 -0.0182 -2.3661 15 6 2.1524 1.4419 -2.5494 16 6 3.0707 1.8129 -3.7287 17 1 2.4935 2.2843 -4.5243 18 6 4.1880 2.7466 -3.2591 19 7 3.6106 4.0334 -2.8485 20 6 3.6621 0.4695 -4.2149 21 1 4.6462 0.3004 -3.7779 22 6 3.7360 0.4313 -5.7426 23 6 2.6463 -0.5676 -3.6836 24 1 -0.3633 0.6087 -0.8280 25 1 -0.3634 -1.0213 -0.1132 26 1 -0.3634 0.4128 0.9411 27 1 1.9991 -1.9360 3.4278 28 1 1.1234 1.7186 -2.7788 29 1 2.4810 1.9527 -1.6443 30 1 4.7075 2.2951 -2.4138 31 1 4.8931 2.9084 -4.0744 32 1 2.9063 3.9034 -2.1377 33 1 4.3291 4.6683 -2.5342 34 1 4.3709 1.2438 -6.0960 35 1 4.1555 -0.5226 -6.0624 36 1 2.7348 0.5457 -6.1578 37 1 3.1186 -1.5431 -3.5675 38 1 1.7840 -0.6333 -4.3471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358262218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:54 Heat of formation + Delta-G solvation = -74.161165 kcal Electronic energy + Delta-G solvation = -18119.349465 eV Core-core repulsion = 15380.912337 eV Total energy + Delta-G solvation = -2738.437128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22681 -39.15837 -35.89686 -35.42263 -33.94752 -32.87057 -30.17848 -27.65710 -26.90815 -26.21830 -23.95589 -22.29216 -21.06639 -20.18209 -19.33969 -18.17845 -17.33943 -16.61325 -16.12285 -15.81318 -15.66252 -15.32876 -14.90554 -14.64765 -14.50167 -13.90387 -13.82043 -13.66906 -13.45222 -13.13005 -12.98805 -12.94842 -12.55802 -12.38812 -12.01401 -11.79400 -11.60318 -11.56113 -11.53430 -11.09927 -10.61323 -10.45323 -9.68570 -9.59616 -8.83699 -6.42680 1.45379 1.54268 1.72591 1.75902 2.06745 2.51079 2.98200 3.39753 3.52933 3.63209 3.99991 4.07198 4.16553 4.33473 4.40737 4.43566 4.55276 4.62763 4.62891 4.66980 4.73145 4.78642 4.88163 4.91229 5.00527 5.11169 5.14784 5.28048 5.33294 5.41997 5.53818 5.82100 5.97429 6.22158 6.49986 6.57923 6.59907 7.29615 7.37703 8.54161 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025976 B = 0.007782 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.660920 B = 3597.044965 C = 4276.118190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 H 0.061 0.939 4 C -0.608 4.608 5 H 0.005 0.995 6 C -0.017 4.017 7 N -0.929 5.929 8 Si 1.082 2.918 9 H -0.288 1.288 10 H -0.255 1.255 11 H -0.227 1.227 12 C 0.540 3.460 13 O -0.599 6.599 14 N -0.631 5.631 15 C 0.096 3.904 16 C -0.084 4.084 17 H 0.114 0.886 18 C 0.071 3.929 19 N -0.852 5.852 20 C -0.093 4.093 21 H 0.068 0.932 22 C -0.132 4.132 23 C 0.098 3.902 24 H 0.072 0.928 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.249 0.751 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.011 0.989 31 H 0.088 0.912 32 H 0.343 0.657 33 H 0.350 0.650 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 13.477 -18.720 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.013 4.013 3 H 0.079 0.921 4 C -0.645 4.645 5 H 0.024 0.976 6 C -0.215 4.215 7 N -0.564 5.564 8 Si 0.900 3.100 9 H -0.215 1.215 10 H -0.180 1.180 11 H -0.150 1.150 12 C 0.332 3.668 13 O -0.479 6.479 14 N -0.365 5.365 15 C -0.026 4.026 16 C -0.103 4.103 17 H 0.132 0.868 18 C -0.060 4.060 19 N -0.383 5.383 20 C -0.113 4.113 21 H 0.087 0.913 22 C -0.189 4.189 23 C -0.024 4.024 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.825 13.980 -18.254 23.007 hybrid contribution 1.155 -2.656 0.521 2.943 sum 1.979 11.324 -17.733 21.133 Atomic orbital electron populations 1.22009 0.94549 1.00458 1.02250 1.19069 0.95261 0.96819 0.90107 0.92101 1.21949 1.38117 1.11644 0.92835 0.97644 1.27564 0.92968 1.09803 0.91139 1.70965 1.46360 1.05960 1.33084 0.83718 0.79609 0.69635 0.77029 1.21452 1.17980 1.15028 1.21069 0.75224 0.86620 0.83888 1.90534 1.54379 1.18304 1.84706 1.49016 1.68938 1.09309 1.09199 1.22460 1.01512 0.79165 0.99464 1.22202 0.96283 0.94754 0.97049 0.86755 1.21802 0.95642 0.89270 0.99252 1.58819 1.18772 1.12427 1.48267 1.22196 0.97712 0.93298 0.98115 0.91303 1.21689 1.03186 1.02732 0.91301 1.22621 0.98552 0.97783 0.83473 0.90887 0.95382 0.91651 0.94259 0.89470 0.91367 0.97029 0.89328 0.84427 0.83668 0.90616 0.92260 0.91205 0.92841 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.84 71.98 0.64 -5.10 16 2 C 0.01 0.45 1.89 -12.29 -0.02 0.42 16 3 H 0.06 2.61 5.37 -2.38 -0.01 2.59 16 4 C -0.61 -37.18 8.61 25.60 0.22 -36.96 16 5 H 0.01 0.37 7.34 -2.91 -0.02 0.35 16 6 C -0.02 -1.01 5.24 84.66 0.44 -0.56 16 7 N -0.93 -60.24 13.69 21.45 0.29 -59.95 16 8 Si 1.08 47.22 26.35 68.60 1.81 49.03 16 9 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 11 H -0.23 -8.26 5.75 99.48 0.57 -7.69 16 12 C 0.54 25.91 6.94 87.66 0.61 26.52 16 13 O -0.60 -34.83 16.12 -3.04 -0.05 -34.88 16 14 N -0.63 -22.16 3.29 -810.10 -2.67 -24.83 16 15 C 0.10 2.41 5.87 86.53 0.51 2.92 16 16 C -0.08 -1.56 2.83 -9.90 -0.03 -1.59 16 17 H 0.11 1.74 7.86 -2.38 -0.02 1.72 16 18 C 0.07 1.28 5.97 86.30 0.51 1.79 16 19 N -0.85 -13.73 9.62 -186.73 -1.80 -15.53 16 20 C -0.09 -1.90 3.18 -9.70 -0.03 -1.93 16 21 H 0.07 1.58 7.86 -2.39 -0.02 1.57 16 22 C -0.13 -1.81 9.17 71.98 0.66 -1.15 16 23 C 0.10 2.77 6.54 86.61 0.57 3.34 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 2.75 4.75 -2.38 -0.01 2.74 16 27 H 0.25 16.78 8.73 -92.71 -0.81 15.98 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.78 5.60 -2.39 -0.01 1.76 16 30 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.34 5.59 7.64 -89.69 -0.69 4.91 16 33 H 0.35 4.69 9.08 -89.69 -0.81 3.88 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 37 H 0.05 1.79 7.82 -2.39 -0.02 1.77 16 38 H 0.09 2.10 8.02 -2.39 -0.02 2.08 16 Total: -1.00 -79.74 299.28 1.05 -78.69 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -0.61 Total: 19.77 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.08 Total: -12.31 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -4.17 Total: -100.31 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.05 Total: -34.88 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.81 Total: 49.03 kcal Total: -79.74 1.05 -78.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358262218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.531 kcal (2) G-P(sol) polarization free energy of solvation -79.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds