Wall clock time and date at job start Sun Mar 29 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.21288 * 120.00038 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00369 * 180.02562 * 3 2 1 6 6 C 1.47030 * 125.64752 * 359.69182 * 5 3 2 7 7 C 1.54310 * 107.27500 * 180.96890 * 6 5 3 8 8 C 1.55157 * 102.86465 * 22.52696 * 7 6 5 9 9 H 1.09000 * 111.00165 * 82.37627 * 8 7 6 10 10 C 1.53002 * 111.03798 * 206.21195 * 8 7 6 11 11 H 1.09007 * 109.46690 * 52.21846 * 10 8 7 12 12 C 1.53002 * 109.47144 * 172.21217 * 10 8 7 13 13 N 1.46491 * 109.47188 * 292.22093 * 10 8 7 14 14 C 1.36943 * 120.00284 * 155.00090 * 13 10 8 15 15 H 1.07995 * 119.99485 * 359.97438 * 14 13 10 16 16 C 1.38814 * 120.00042 * 179.97438 * 14 13 10 17 17 N 1.31614 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99842 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46927 * 60.00116 * 18 16 14 20 20 H 1.48495 * 109.47136 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47355 * 300.00503 * 18 16 14 22 22 C 1.47420 * 125.65128 * 180.02562 * 5 3 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 28 28 H 1.09000 * 109.87975 * 300.51893 * 6 5 3 29 29 H 1.09002 * 109.87735 * 61.67592 * 6 5 3 30 30 H 1.09005 * 110.92436 * 264.11063 * 7 6 5 31 31 H 1.08997 * 110.59179 * 140.78818 * 7 6 5 32 32 H 1.09002 * 109.46272 * 60.00268 * 12 10 8 33 33 H 1.09001 * 109.46910 * 180.02562 * 12 10 8 34 34 H 1.08991 * 109.47238 * 300.00558 * 12 10 8 35 35 H 0.97009 * 120.00080 * 334.99401 * 13 10 8 36 36 H 0.97001 * 119.99928 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.36580 * 274.67437 * 22 5 3 38 38 H 1.08998 * 110.36749 * 36.88228 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.4182 0.6490 0.0053 7 6 5.7690 1.3947 0.0271 8 6 5.3890 2.7807 0.6118 9 1 5.3398 2.7455 1.7002 10 6 6.3668 3.8608 0.1447 11 1 6.4501 3.8301 -0.9418 12 6 5.8535 5.2355 0.5781 13 7 7.6824 3.6200 0.7423 14 6 8.8111 4.0903 0.1256 15 1 8.7313 4.6383 -0.8015 16 6 10.0577 3.8625 0.6922 17 7 10.1549 3.1940 1.8218 18 14 11.5973 4.5034 -0.1493 19 1 11.5199 5.9820 -0.2636 20 1 12.7908 4.1311 0.6520 21 1 11.7050 3.9072 -1.5051 22 6 3.9833 3.0018 -0.0001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 4.3247 0.0213 0.8915 29 1 4.3494 0.0368 -0.8940 30 1 6.1727 1.4986 -0.9801 31 1 6.4788 0.8833 0.6774 32 1 5.7702 5.2661 1.6645 33 1 6.5499 6.0049 0.2448 34 1 4.8747 5.4146 0.1334 35 1 7.7541 3.1274 1.5749 36 1 11.0260 3.0345 2.2176 37 1 4.0685 3.3812 -1.0184 38 1 3.4047 3.6919 0.6139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484326970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:55 Heat of formation + Delta-G solvation = -38.545502 kcal Electronic energy + Delta-G solvation = -17494.256670 eV Core-core repulsion = 14757.363953 eV Total energy + Delta-G solvation = -2736.892717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03496 -37.84997 -35.19386 -32.98456 -32.28733 -30.45932 -29.26308 -27.49080 -25.21109 -23.87302 -22.48821 -21.40840 -19.62248 -19.02040 -17.35203 -16.93482 -16.30345 -15.55742 -14.91344 -14.41687 -13.98919 -13.47901 -13.44361 -13.12223 -12.77131 -12.65980 -12.37876 -12.32149 -12.09582 -11.78934 -11.72369 -11.31406 -11.21905 -10.87814 -10.71879 -10.57679 -10.38698 -10.23442 -9.92556 -9.76581 -9.63379 -8.91995 -8.57214 -6.97723 -5.78119 -3.06551 2.66287 3.04800 3.42783 3.47799 3.48232 4.44033 4.57655 4.81256 4.88153 4.91697 4.99725 5.14075 5.33295 5.34585 5.53277 5.54346 5.62339 5.71196 5.77705 5.87338 5.91910 5.99503 6.05513 6.07629 6.21845 6.26711 6.37766 6.46867 6.57545 6.64353 6.87225 7.09652 7.58477 7.68721 8.19896 8.40520 9.51853 10.09031 10.44084 11.44488 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052754 B = 0.004633 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.641528 B = 6042.253085 C = 6333.611693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.523 3.477 4 O -0.549 6.549 5 N -0.619 5.619 6 C 0.098 3.902 7 C -0.117 4.117 8 C -0.102 4.102 9 H 0.080 0.920 10 C 0.185 3.815 11 H 0.049 0.951 12 C -0.168 4.168 13 N -0.722 5.722 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C 0.113 3.887 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -7.425 -3.414 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.312 3.688 4 O -0.427 6.427 5 N -0.353 5.353 6 C -0.025 4.025 7 C -0.155 4.155 8 C -0.122 4.122 9 H 0.099 0.901 10 C 0.075 3.925 11 H 0.067 0.933 12 C -0.228 4.228 13 N -0.363 5.363 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.010 4.010 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.389 -6.895 -3.528 16.341 hybrid contribution 1.109 0.173 -0.090 1.126 sum -13.280 -6.722 -3.619 15.318 Atomic orbital electron populations 1.21529 0.93165 1.01376 1.03306 1.21606 0.98331 0.93871 1.04195 1.20438 0.80531 0.91808 0.76014 1.90689 1.54495 1.46813 1.50665 1.48655 1.05064 1.08786 1.72764 1.22167 0.87806 0.91322 1.01190 1.22590 0.94509 0.95484 1.02914 1.22656 0.93218 0.95890 1.00445 0.90115 1.20130 0.85432 0.90550 0.96386 0.93311 1.22497 0.99082 1.00289 1.00949 1.42365 0.99697 1.66600 1.27654 1.19183 0.84978 1.28353 1.04346 0.91281 1.24710 0.97496 1.01141 0.97503 1.69644 1.23479 1.45473 1.19602 0.86295 0.83040 0.78519 0.78494 1.21329 1.21750 1.21306 1.22299 0.93287 0.84264 1.01116 0.92062 0.92026 0.92196 0.89061 0.89109 0.91548 0.91642 0.90275 0.89465 0.93453 0.92739 0.94351 0.78305 0.93504 0.91419 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 37.16 0.34 -0.92 16 2 C -0.14 -1.34 5.61 -27.89 -0.16 -1.50 16 3 C 0.52 7.28 7.85 -10.99 -0.09 7.19 16 4 O -0.55 -9.65 16.24 5.55 0.09 -9.56 16 5 N -0.62 -8.37 3.33 -170.54 -0.57 -8.94 16 6 C 0.10 1.12 6.48 -3.07 -0.02 1.10 16 7 C -0.12 -1.65 6.28 -24.90 -0.16 -1.81 16 8 C -0.10 -1.59 2.65 -88.48 -0.23 -1.83 16 9 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 10 C 0.19 3.49 2.43 -67.93 -0.16 3.33 16 11 H 0.05 0.94 8.02 -51.92 -0.42 0.52 16 12 C -0.17 -3.00 9.27 37.16 0.34 -2.66 16 13 N -0.72 -17.17 4.97 -53.43 -0.27 -17.43 16 14 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 18 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.11 1.66 5.27 -2.54 -0.01 1.64 16 23 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.59 7.23 -51.93 -0.38 0.21 16 35 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -30.95 311.57 -7.28 -38.24 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.55 Total: 5.19 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.39 Total: -2.41 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.11 Total: -53.11 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.95 -7.28 -38.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484326970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.308 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds