Wall clock time and date at job start Sun Mar 29 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.21288 * 120.00038 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00369 * 180.02562 * 3 2 1 6 6 C 1.47030 * 125.64752 * 359.69182 * 5 3 2 7 7 C 1.54310 * 107.27500 * 180.96890 * 6 5 3 8 8 C 1.55157 * 102.86465 * 22.52696 * 7 6 5 9 9 H 1.09000 * 111.00165 * 82.37627 * 8 7 6 10 10 C 1.53002 * 111.03798 * 206.21195 * 8 7 6 11 11 H 1.09007 * 109.46690 * 52.21846 * 10 8 7 12 12 C 1.53002 * 109.47144 * 172.21217 * 10 8 7 13 13 N 1.46491 * 109.47188 * 292.22093 * 10 8 7 14 14 C 1.36943 * 120.00284 * 155.00090 * 13 10 8 15 15 H 1.07995 * 119.99485 * 359.97438 * 14 13 10 16 16 C 1.38814 * 120.00042 * 179.97438 * 14 13 10 17 17 N 1.31614 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99842 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46927 * 60.00116 * 18 16 14 20 20 H 1.48495 * 109.47136 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47355 * 300.00503 * 18 16 14 22 22 C 1.47420 * 125.65128 * 180.02562 * 5 3 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 28 28 H 1.09000 * 109.87975 * 300.51893 * 6 5 3 29 29 H 1.09002 * 109.87735 * 61.67592 * 6 5 3 30 30 H 1.09005 * 110.92436 * 264.11063 * 7 6 5 31 31 H 1.08997 * 110.59179 * 140.78818 * 7 6 5 32 32 H 1.09002 * 109.46272 * 60.00268 * 12 10 8 33 33 H 1.09001 * 109.46910 * 180.02562 * 12 10 8 34 34 H 1.08991 * 109.47238 * 300.00558 * 12 10 8 35 35 H 0.97009 * 120.00080 * 334.99401 * 13 10 8 36 36 H 0.97001 * 119.99928 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.36580 * 274.67437 * 22 5 3 38 38 H 1.08998 * 110.36749 * 36.88228 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.4182 0.6490 0.0053 7 6 5.7690 1.3947 0.0271 8 6 5.3890 2.7807 0.6118 9 1 5.3398 2.7455 1.7002 10 6 6.3668 3.8608 0.1447 11 1 6.4501 3.8301 -0.9418 12 6 5.8535 5.2355 0.5781 13 7 7.6824 3.6200 0.7423 14 6 8.8111 4.0903 0.1256 15 1 8.7313 4.6383 -0.8015 16 6 10.0577 3.8625 0.6922 17 7 10.1549 3.1940 1.8218 18 14 11.5973 4.5034 -0.1493 19 1 11.5199 5.9820 -0.2636 20 1 12.7908 4.1311 0.6520 21 1 11.7050 3.9072 -1.5051 22 6 3.9833 3.0018 -0.0001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 4.3247 0.0213 0.8915 29 1 4.3494 0.0368 -0.8940 30 1 6.1727 1.4986 -0.9801 31 1 6.4788 0.8833 0.6774 32 1 5.7702 5.2661 1.6645 33 1 6.5499 6.0049 0.2448 34 1 4.8747 5.4146 0.1334 35 1 7.7541 3.1274 1.5749 36 1 11.0260 3.0345 2.2176 37 1 4.0685 3.3812 -1.0184 38 1 3.4047 3.6919 0.6139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484326970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:54 Heat of formation + Delta-G solvation = -58.301597 kcal Electronic energy + Delta-G solvation = -17495.113358 eV Core-core repulsion = 14757.363953 eV Total energy + Delta-G solvation = -2737.749405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14452 -39.10388 -36.77163 -34.32006 -33.60509 -31.79329 -30.80132 -28.86570 -26.50198 -25.46789 -23.57301 -22.76751 -21.07620 -20.03210 -19.13145 -18.15502 -17.51643 -16.72194 -16.35505 -15.78613 -15.51007 -15.03473 -14.65253 -14.41582 -14.04150 -13.94237 -13.73332 -13.40231 -13.19415 -13.09388 -12.88537 -12.74746 -12.58013 -12.31804 -12.21521 -12.03844 -11.93473 -11.64693 -11.54971 -11.37899 -10.93006 -10.86226 -9.65605 -8.97185 -7.90238 -5.17442 1.49864 1.51567 1.57475 1.62834 2.02055 2.59092 3.39890 3.45381 3.69924 3.77979 3.86921 4.19270 4.24316 4.27048 4.34944 4.39316 4.51991 4.61243 4.64555 4.73058 4.81088 4.90616 4.97382 4.99307 5.04720 5.09104 5.18072 5.22942 5.32356 5.37970 5.39745 5.55355 5.59971 6.31846 6.55340 7.14813 7.38851 8.14517 8.38516 9.32882 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052754 B = 0.004633 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.641528 B = 6042.253085 C = 6333.611693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.515 3.485 4 O -0.594 6.594 5 N -0.620 5.620 6 C 0.105 3.895 7 C -0.115 4.115 8 C -0.094 4.094 9 H 0.073 0.927 10 C 0.182 3.818 11 H 0.047 0.953 12 C -0.160 4.160 13 N -0.730 5.730 14 C -0.235 4.235 15 H 0.073 0.927 16 C -0.072 4.072 17 N -0.968 5.968 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.298 1.298 21 H -0.278 1.278 22 C 0.118 3.882 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.373 0.627 36 H 0.250 0.750 37 H 0.069 0.931 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 -8.727 -4.356 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C 0.306 3.694 4 O -0.475 6.475 5 N -0.354 5.354 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.114 4.114 9 H 0.092 0.908 10 C 0.074 3.926 11 H 0.065 0.935 12 C -0.220 4.220 13 N -0.370 5.370 14 C -0.367 4.367 15 H 0.091 0.909 16 C -0.264 4.264 17 N -0.619 5.619 18 Si 0.796 3.204 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.204 1.204 22 C -0.005 4.005 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.180 -8.201 -4.501 17.831 hybrid contribution 1.278 0.608 0.181 1.427 sum -13.902 -7.592 -4.321 16.419 Atomic orbital electron populations 1.21541 0.93205 1.02743 1.01841 1.21689 0.98209 0.90893 1.06413 1.21314 0.79999 0.93278 0.74782 1.90669 1.55522 1.48591 1.52745 1.48751 1.05608 1.08582 1.72426 1.22237 0.85178 0.90632 1.03650 1.22527 0.96089 0.94708 1.01988 1.22436 0.93073 0.95858 1.00017 0.90822 1.20296 0.84199 0.92152 0.95987 0.93509 1.22373 0.99994 0.98968 1.00664 1.42505 1.00897 1.66323 1.27311 1.19537 0.86017 1.27052 1.04121 0.90919 1.25431 1.00288 1.02300 0.98416 1.69791 1.23535 1.47385 1.21162 0.85320 0.79447 0.77980 0.77666 1.20913 1.22407 1.20380 1.22112 0.92367 0.85268 1.00767 0.93486 0.93632 0.89319 0.86792 0.86556 0.89384 0.88875 0.90982 0.90451 0.94027 0.94456 0.91671 0.79481 0.94170 0.91311 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.13 -2.08 5.61 29.85 0.17 -1.92 16 3 C 0.51 13.33 7.85 87.66 0.69 14.01 16 4 O -0.59 -20.58 16.24 -3.05 -0.05 -20.63 16 5 N -0.62 -15.44 3.33 -811.84 -2.70 -18.14 16 6 C 0.10 2.06 6.48 86.72 0.56 2.62 16 7 C -0.12 -3.07 6.28 31.78 0.20 -2.87 16 8 C -0.09 -2.86 2.65 -9.41 -0.02 -2.88 16 9 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 10 C 0.18 6.81 2.43 44.99 0.11 6.92 16 11 H 0.05 1.78 8.02 -2.38 -0.02 1.76 16 12 C -0.16 -5.66 9.27 71.98 0.67 -4.99 16 13 N -0.73 -34.93 4.97 -322.94 -1.61 -36.54 16 14 C -0.24 -12.62 9.93 84.03 0.83 -11.79 16 15 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 17 N -0.97 -57.67 13.06 21.65 0.28 -57.38 16 18 Si 0.97 45.30 29.55 68.60 2.03 47.32 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 C 0.12 3.33 5.27 86.85 0.46 3.79 16 23 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 24 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 25 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 2.02 8.00 -2.38 -0.02 2.01 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.93 7.23 -2.39 -0.02 1.92 16 35 H 0.37 19.21 7.80 -92.70 -0.72 18.49 16 36 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 38 H 0.07 1.99 7.94 -2.39 -0.02 1.97 16 Total: -1.00 -67.09 311.57 3.04 -64.05 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.30 Total: 23.53 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.79 Total: -2.21 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.02 Total: -112.06 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.09 3.04 -64.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484326970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.750 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds