Wall clock time and date at job start Sun Mar 29 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99838 * 2 1 4 4 N 1.34779 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.46991 * 120.61424 * 5.17131 * 4 2 1 6 6 C 1.53189 * 108.73717 * 126.38508 * 5 4 2 7 7 C 1.53041 * 109.34277 * 54.62121 * 6 5 4 8 8 H 1.08997 * 109.45763 * 58.63491 * 7 6 5 9 9 C 1.52993 * 109.46421 * 178.61005 * 7 6 5 10 10 C 1.53043 * 109.53714 * 298.62025 * 7 6 5 11 11 C 1.46925 * 120.62986 * 185.14567 * 4 2 1 12 12 H 1.08997 * 109.58920 * 113.84634 * 11 4 2 13 13 C 1.53003 * 109.70395 * 353.48843 * 11 4 2 14 14 N 1.46498 * 109.47105 * 179.48977 * 13 11 4 15 15 C 1.36942 * 119.99789 * 174.61749 * 14 13 11 16 16 H 1.07998 * 119.99998 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99651 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99655 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46707 * 90.00377 * 19 17 15 21 21 H 1.48497 * 109.47114 * 210.00121 * 19 17 15 22 22 H 1.48493 * 109.47372 * 330.00777 * 19 17 15 23 23 H 1.09000 * 109.47423 * 239.99814 * 1 2 3 24 24 H 1.09001 * 109.47486 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46726 * 120.00241 * 1 2 3 26 26 H 1.09004 * 109.63126 * 6.59583 * 5 4 2 27 27 H 1.08999 * 109.58506 * 246.14271 * 5 4 2 28 28 H 1.08997 * 109.50057 * 294.65139 * 6 5 4 29 29 H 1.09007 * 109.50060 * 174.58683 * 6 5 4 30 30 H 1.09010 * 109.47313 * 60.00073 * 9 7 6 31 31 H 1.09004 * 109.47276 * 179.97438 * 9 7 6 32 32 H 1.08997 * 109.47485 * 300.00446 * 9 7 6 33 33 H 1.08995 * 109.49473 * 181.31268 * 10 7 6 34 34 H 1.08997 * 109.49539 * 301.41335 * 10 7 6 35 35 H 1.08996 * 109.47500 * 299.49549 * 13 11 4 36 36 H 1.09000 * 109.46821 * 59.49935 * 13 11 4 37 37 H 0.97005 * 120.00220 * 354.62841 * 14 13 11 38 38 H 0.97004 * 119.99795 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4641 -2.4455 -0.1129 6 6 2.0636 -3.2444 -1.2744 7 6 3.5731 -3.3862 -1.0663 8 1 3.7633 -3.8866 -0.1168 9 6 4.1695 -4.2134 -2.2068 10 6 4.2200 -1.9993 -1.0502 11 6 3.6456 -1.1859 0.1139 12 1 3.9332 -1.6469 1.0588 13 6 4.1858 0.2444 0.0558 14 7 5.6452 0.2207 0.1815 15 6 6.3629 1.3791 0.0463 16 1 5.8531 2.3102 -0.1526 17 6 7.7458 1.3566 0.1649 18 7 8.4356 2.4700 0.0354 19 14 8.6276 -0.2537 0.5096 20 1 8.9755 -0.9123 -0.7752 21 1 9.8684 0.0163 1.2793 22 1 7.7398 -1.1453 1.2983 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8901 26 1 0.4079 -2.2572 -0.3057 27 1 1.5737 -3.0094 0.8134 28 1 1.8731 -2.7221 -2.2119 29 1 1.6068 -4.2336 -1.3097 30 1 3.9790 -3.7134 -3.1565 31 1 5.2448 -4.3141 -2.0589 32 1 3.7098 -5.2016 -2.2180 33 1 5.2979 -2.1022 -0.9253 34 1 4.0092 -1.4887 -1.9898 35 1 3.9104 0.6985 -0.8960 36 1 3.7603 0.8269 0.8729 37 1 6.1031 -0.6155 0.3603 38 1 9.4019 2.4544 0.1186 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489024151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:34 Heat of formation + Delta-G solvation = -16.752370 kcal Electronic energy + Delta-G solvation = -18218.517334 eV Core-core repulsion = 15482.569639 eV Total energy + Delta-G solvation = -2735.947695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37141 -37.57726 -34.96262 -33.91256 -32.16447 -30.30572 -29.69917 -27.80386 -25.71835 -23.48327 -22.66136 -21.05541 -20.37677 -18.95824 -17.49489 -16.48786 -15.85869 -15.51583 -14.69190 -14.33285 -14.25415 -13.72170 -13.55958 -13.46815 -13.31491 -12.68030 -12.51191 -12.36918 -11.99529 -11.94455 -11.88094 -11.57102 -11.26513 -10.97561 -10.84622 -10.72288 -10.47120 -10.23882 -10.09712 -9.45683 -8.86576 -8.78868 -8.35964 -7.03321 -5.63009 -2.96535 2.82506 3.09080 3.43642 3.45299 3.51243 4.58443 4.61126 4.69749 4.73938 4.85814 5.09516 5.13073 5.20684 5.30918 5.33057 5.46675 5.53104 5.62236 5.64289 5.68420 5.79276 5.81213 5.83131 5.90934 5.96715 6.12603 6.16578 6.22541 6.49302 6.66151 7.05890 7.24909 7.59005 8.16208 8.42246 8.57346 9.36589 10.08595 10.29196 11.56201 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.008054 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.424109 B = 3475.510863 C = 4477.656263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.501 3.499 3 O -0.518 6.518 4 N -0.610 5.610 5 C 0.109 3.891 6 C -0.129 4.129 7 C -0.095 4.095 8 H 0.069 0.931 9 C -0.146 4.146 10 C -0.122 4.122 11 C 0.135 3.865 12 H 0.068 0.932 13 C 0.169 3.831 14 N -0.762 5.762 15 C -0.229 4.229 16 H 0.091 0.909 17 C -0.002 4.002 18 N -0.939 5.939 19 Si 0.882 3.118 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.279 1.279 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.354 0.646 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.437 -15.753 -1.761 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.289 3.711 3 O -0.393 6.393 4 N -0.346 5.346 5 C -0.014 4.014 6 C -0.167 4.167 7 C -0.114 4.114 8 H 0.088 0.912 9 C -0.203 4.203 10 C -0.160 4.160 11 C 0.032 3.968 12 H 0.086 0.914 13 C 0.043 3.957 14 N -0.409 5.409 15 C -0.359 4.359 16 H 0.108 0.892 17 C -0.196 4.196 18 N -0.588 5.588 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.205 1.205 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.187 0.813 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.093 -14.924 -1.794 22.762 hybrid contribution 0.771 -1.299 0.236 1.529 sum -16.323 -16.223 -1.558 23.066 Atomic orbital electron populations 1.21975 0.92631 1.05122 1.03490 1.20787 0.90251 0.83499 0.76593 1.90876 1.69022 1.31468 1.47976 1.48190 1.07077 1.05810 1.73479 1.21718 0.96298 0.84669 0.98708 1.21983 0.96025 0.99976 0.98746 1.21166 0.94486 0.96482 0.99228 0.91235 1.21811 1.00976 0.99136 0.98375 1.22019 1.00670 0.94140 0.99205 1.21602 0.78050 0.99385 0.97750 0.91436 1.21258 0.82954 0.90377 1.01109 1.42971 1.02197 1.07453 1.88300 1.19091 0.89283 0.87756 1.39794 0.89165 1.24660 0.96031 0.96361 1.02569 1.69708 1.06113 1.25216 1.57755 0.86562 0.79473 0.84693 0.77947 1.21223 1.21834 1.20496 0.89841 0.89199 0.89874 0.89749 0.91541 0.91424 0.90981 0.92673 0.92470 0.92958 0.90413 0.91266 0.93843 0.93291 0.81332 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 8.72 36.01 0.31 -1.30 16 2 C 0.50 7.48 7.72 -10.98 -0.08 7.40 16 3 O -0.52 -10.52 12.51 5.56 0.07 -10.45 16 4 N -0.61 -8.35 2.97 -165.17 -0.49 -8.84 16 5 C 0.11 0.99 6.33 -3.68 -0.02 0.97 16 6 C -0.13 -1.16 5.36 -26.61 -0.14 -1.30 16 7 C -0.10 -1.06 2.68 -90.58 -0.24 -1.30 16 8 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 9 C -0.15 -1.48 9.19 37.15 0.34 -1.14 16 10 C -0.12 -1.85 4.41 -26.61 -0.12 -1.97 16 11 C 0.14 2.28 3.03 -67.60 -0.20 2.07 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C 0.17 3.80 4.10 -4.04 -0.02 3.78 16 14 N -0.76 -19.63 5.08 -59.91 -0.30 -19.93 16 15 C -0.23 -6.99 10.47 -15.06 -0.16 -7.15 16 16 H 0.09 3.00 8.06 -52.49 -0.42 2.58 16 17 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 18 N -0.94 -30.94 13.97 55.49 0.78 -30.16 16 19 Si 0.88 22.99 27.74 -169.99 -4.71 18.27 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 23 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 24 H 0.09 0.87 8.12 -51.93 -0.42 0.44 16 25 H 0.08 0.59 7.48 -51.92 -0.39 0.21 16 26 H 0.08 0.55 5.97 -51.93 -0.31 0.24 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.31 7.22 -51.93 -0.38 0.93 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 1.07 7.08 -51.93 -0.37 0.70 16 36 H 0.05 1.22 6.41 -51.93 -0.33 0.88 16 37 H 0.35 8.67 4.68 -40.82 -0.19 8.48 16 38 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -35.64 295.24 -6.85 -42.49 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.20 Total: 4.26 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.43 Total: -0.09 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.02 Total: -58.94 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.64 -6.85 -42.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489024151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.735 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds