Wall clock time and date at job start Sun Mar 29 2020 22:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47404 * 2 1 4 4 O 1.21286 * 119.99751 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00419 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00193 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47179 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.47105 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47058 * 179.97438 * 8 7 6 10 10 C 1.36935 * 119.99937 * 270.00095 * 9 8 7 11 11 H 1.08003 * 119.99855 * 144.92770 * 10 9 8 12 12 C 1.38814 * 120.00273 * 324.92932 * 10 9 8 13 13 N 1.31620 * 119.99838 * 337.93463 * 12 10 9 14 14 Si 1.86801 * 120.00091 * 157.93681 * 12 10 9 15 15 H 1.48501 * 109.46754 * 89.99914 * 14 12 10 16 16 H 1.48495 * 109.46949 * 209.99670 * 14 12 10 17 17 H 1.48495 * 109.47225 * 330.00128 * 14 12 10 18 18 C 1.46494 * 119.99631 * 90.00309 * 9 8 7 19 19 C 1.53008 * 117.49603 * 183.23516 * 18 9 8 20 20 C 1.53005 * 117.50060 * 114.58020 * 18 9 8 21 21 H 1.08997 * 109.46625 * 299.99956 * 1 2 3 22 22 H 1.08995 * 109.46812 * 59.99899 * 1 2 3 23 23 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47439 * 239.99795 * 2 1 3 25 25 H 1.09008 * 109.47108 * 120.00169 * 2 1 3 26 26 H 0.96999 * 119.99484 * 359.97438 * 5 3 2 27 27 H 1.08999 * 109.46741 * 59.99753 * 6 5 3 28 28 H 1.08998 * 109.46801 * 300.00115 * 6 5 3 29 29 H 1.09002 * 109.46733 * 59.99597 * 7 6 5 30 30 H 1.09002 * 109.46889 * 300.00553 * 7 6 5 31 31 H 1.09004 * 109.46724 * 60.00538 * 8 7 6 32 32 H 1.08991 * 109.47467 * 300.00398 * 8 7 6 33 33 H 0.96995 * 119.99672 * 176.06957 * 13 12 10 34 34 H 1.08998 * 115.55292 * 328.90743 * 18 9 8 35 35 H 1.09004 * 117.49709 * 0.02562 * 19 18 9 36 36 H 1.09001 * 117.49616 * 145.02232 * 19 18 9 37 37 H 1.08992 * 117.50031 * 214.97936 * 20 18 9 38 38 H 1.09007 * 117.49694 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8458 3.0483 -0.0011 7 6 5.3758 3.0483 -0.0010 8 6 5.8858 4.4907 -0.0022 9 7 7.3508 4.4907 -0.0015 10 6 8.0349 4.4919 1.1848 11 1 8.9678 3.9545 1.2707 12 6 7.5293 5.1838 2.2769 13 7 6.6713 6.1650 2.0945 14 14 8.0668 4.7222 4.0053 15 1 9.2691 5.5107 4.3769 16 1 6.9680 5.0154 4.9602 17 1 8.3907 3.2738 4.0528 18 6 8.0838 4.4895 -1.2698 19 6 9.6106 4.4129 -1.2033 20 6 8.9262 5.7233 -1.6002 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9877 0.9298 -0.0005 27 1 3.4827 3.5623 0.8889 28 1 3.4821 3.5618 -0.8911 29 1 5.7392 2.5340 -0.8907 30 1 5.7390 2.5348 0.8893 31 1 5.5224 5.0053 0.8874 32 1 5.5225 5.0038 -0.8925 33 1 6.2745 6.6107 2.8592 34 1 7.5900 3.9808 -2.0977 35 1 10.0694 4.3631 -0.2158 36 1 10.1211 3.8542 -1.9877 37 1 8.9867 6.0262 -2.6455 38 1 8.9345 6.5362 -0.8740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490360755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:48 Heat of formation + Delta-G solvation = -7.459491 kcal Electronic energy + Delta-G solvation = -17191.442740 eV Core-core repulsion = 14455.898015 eV Total energy + Delta-G solvation = -2735.544726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49865 -37.14430 -35.28273 -33.55611 -32.82235 -31.45647 -29.39156 -25.78843 -24.32659 -22.88992 -21.43606 -20.97189 -20.08138 -19.55278 -16.92734 -16.42865 -15.80822 -15.58259 -15.24355 -14.64872 -14.41047 -13.79193 -13.73027 -13.02034 -12.66546 -12.47766 -12.07582 -11.91994 -11.81860 -11.49475 -11.23733 -11.01070 -10.81261 -10.74135 -10.66860 -10.21838 -10.08390 -9.72385 -9.60249 -9.56363 -9.26651 -8.80389 -8.48416 -6.59260 -5.81066 -3.41638 2.79790 3.31957 3.40559 3.41934 3.43077 4.42476 4.78099 4.92014 5.00759 5.01235 5.17315 5.31393 5.46191 5.66559 5.66763 5.79613 5.84017 5.90332 6.02596 6.12049 6.12071 6.26656 6.39932 6.42497 6.48734 6.65192 6.69204 6.80270 7.02651 7.10509 7.21726 7.66013 7.70458 7.77853 8.40203 8.45081 9.12708 9.76095 10.31773 11.14749 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.005608 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.017129 B = 4991.904996 C = 5788.533742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.504 3.496 4 O -0.547 6.547 5 N -0.728 5.728 6 C 0.120 3.880 7 C -0.144 4.144 8 C 0.149 3.851 9 N -0.552 5.552 10 C -0.259 4.259 11 H 0.066 0.934 12 C 0.011 3.989 13 N -0.883 5.883 14 Si 0.895 3.105 15 H -0.285 1.285 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.120 3.880 19 C -0.196 4.196 20 C -0.222 4.222 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.399 0.601 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.028 0.972 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -11.045 -4.912 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.290 3.710 4 O -0.425 6.425 5 N -0.379 5.379 6 C -0.004 4.004 7 C -0.185 4.185 8 C 0.022 3.978 9 N -0.268 5.268 10 C -0.389 4.389 11 H 0.083 0.917 12 C -0.189 4.189 13 N -0.525 5.525 14 Si 0.724 3.276 15 H -0.212 1.212 16 H -0.214 1.214 17 H -0.203 1.203 18 C 0.011 3.989 19 C -0.235 4.235 20 C -0.263 4.263 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.232 0.768 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.991 -10.209 -4.765 12.760 hybrid contribution 0.744 -0.497 0.904 1.272 sum -5.246 -10.706 -3.861 12.532 Atomic orbital electron populations 1.21513 0.93258 1.01245 1.03355 1.21637 0.98528 0.94257 1.04115 1.20771 0.82441 0.91663 0.76110 1.90694 1.55399 1.46646 1.49714 1.46222 1.06859 1.09870 1.74949 1.21441 0.95558 0.81453 1.01913 1.22428 0.91376 1.03163 1.01499 1.20862 0.83215 0.91299 1.02441 1.43407 1.00594 1.83132 0.99683 1.19050 1.07229 1.24912 0.87663 0.91683 1.25125 1.00034 0.94663 0.99115 1.70036 1.32307 1.20279 1.29838 0.86439 0.77959 0.78498 0.84725 1.21222 1.21421 1.20341 1.21223 0.89114 0.98028 0.90501 1.23030 0.97054 1.01399 1.01995 1.23364 1.09765 0.93638 0.99564 0.92014 0.92064 0.92337 0.89161 0.89101 0.76773 0.91567 0.92064 0.93246 0.91591 0.88003 0.95378 0.93468 0.89644 0.88526 0.90828 0.91263 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.15 -1.40 6.42 -27.88 -0.18 -1.58 16 3 C 0.50 7.23 7.83 -10.99 -0.09 7.14 16 4 O -0.55 -10.20 15.98 5.55 0.09 -10.11 16 5 N -0.73 -10.04 5.56 -60.29 -0.33 -10.38 16 6 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 7 C -0.14 -2.62 5.65 -26.73 -0.15 -2.77 16 8 C 0.15 3.32 5.34 -4.04 -0.02 3.29 16 9 N -0.55 -13.23 2.78 -165.66 -0.46 -13.69 16 10 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 11 H 0.07 1.71 6.55 -52.48 -0.34 1.37 16 12 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 13 N -0.88 -24.79 11.33 55.49 0.63 -24.16 16 14 Si 0.89 21.06 29.61 -169.99 -5.03 16.02 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 19 C -0.20 -3.83 9.80 -26.69 -0.26 -4.10 16 20 C -0.22 -4.53 10.36 -26.69 -0.28 -4.80 16 21 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 22 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.40 4.38 8.47 -40.82 -0.35 4.04 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.10 2.61 5.35 -51.93 -0.28 2.33 16 32 H 0.03 0.60 8.07 -51.93 -0.42 0.19 16 33 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.10 2.05 6.37 -51.93 -0.33 1.72 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -30.28 315.90 -8.01 -38.30 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.34 Total: 5.69 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.32 Total: -6.43 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.17 Total: -48.23 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.28 -8.01 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490360755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.836 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds