Wall clock time and date at job start Sun Mar 29 2020 22:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47404 * 2 1 4 4 O 1.21286 * 119.99751 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00419 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00193 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47179 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.47105 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47058 * 179.97438 * 8 7 6 10 10 C 1.36935 * 119.99937 * 270.00095 * 9 8 7 11 11 H 1.08003 * 119.99855 * 144.92770 * 10 9 8 12 12 C 1.38814 * 120.00273 * 324.92932 * 10 9 8 13 13 N 1.31620 * 119.99838 * 337.93463 * 12 10 9 14 14 Si 1.86801 * 120.00091 * 157.93681 * 12 10 9 15 15 H 1.48501 * 109.46754 * 89.99914 * 14 12 10 16 16 H 1.48495 * 109.46949 * 209.99670 * 14 12 10 17 17 H 1.48495 * 109.47225 * 330.00128 * 14 12 10 18 18 C 1.46494 * 119.99631 * 90.00309 * 9 8 7 19 19 C 1.53008 * 117.49603 * 183.23516 * 18 9 8 20 20 C 1.53005 * 117.50060 * 114.58020 * 18 9 8 21 21 H 1.08997 * 109.46625 * 299.99956 * 1 2 3 22 22 H 1.08995 * 109.46812 * 59.99899 * 1 2 3 23 23 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47439 * 239.99795 * 2 1 3 25 25 H 1.09008 * 109.47108 * 120.00169 * 2 1 3 26 26 H 0.96999 * 119.99484 * 359.97438 * 5 3 2 27 27 H 1.08999 * 109.46741 * 59.99753 * 6 5 3 28 28 H 1.08998 * 109.46801 * 300.00115 * 6 5 3 29 29 H 1.09002 * 109.46733 * 59.99597 * 7 6 5 30 30 H 1.09002 * 109.46889 * 300.00553 * 7 6 5 31 31 H 1.09004 * 109.46724 * 60.00538 * 8 7 6 32 32 H 1.08991 * 109.47467 * 300.00398 * 8 7 6 33 33 H 0.96995 * 119.99672 * 176.06957 * 13 12 10 34 34 H 1.08998 * 115.55292 * 328.90743 * 18 9 8 35 35 H 1.09004 * 117.49709 * 0.02562 * 19 18 9 36 36 H 1.09001 * 117.49616 * 145.02232 * 19 18 9 37 37 H 1.08992 * 117.50031 * 214.97936 * 20 18 9 38 38 H 1.09007 * 117.49694 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8458 3.0483 -0.0011 7 6 5.3758 3.0483 -0.0010 8 6 5.8858 4.4907 -0.0022 9 7 7.3508 4.4907 -0.0015 10 6 8.0349 4.4919 1.1848 11 1 8.9678 3.9545 1.2707 12 6 7.5293 5.1838 2.2769 13 7 6.6713 6.1650 2.0945 14 14 8.0668 4.7222 4.0053 15 1 9.2691 5.5107 4.3769 16 1 6.9680 5.0154 4.9602 17 1 8.3907 3.2738 4.0528 18 6 8.0838 4.4895 -1.2698 19 6 9.6106 4.4129 -1.2033 20 6 8.9262 5.7233 -1.6002 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9877 0.9298 -0.0005 27 1 3.4827 3.5623 0.8889 28 1 3.4821 3.5618 -0.8911 29 1 5.7392 2.5340 -0.8907 30 1 5.7390 2.5348 0.8893 31 1 5.5224 5.0053 0.8874 32 1 5.5225 5.0038 -0.8925 33 1 6.2745 6.6107 2.8592 34 1 7.5900 3.9808 -2.0977 35 1 10.0694 4.3631 -0.2158 36 1 10.1211 3.8542 -1.9877 37 1 8.9867 6.0262 -2.6455 38 1 8.9345 6.5362 -0.8740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490360755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:48 Heat of formation + Delta-G solvation = -26.555791 kcal Electronic energy + Delta-G solvation = -17192.270818 eV Core-core repulsion = 14455.898015 eV Total energy + Delta-G solvation = -2736.372804 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68788 -38.85978 -36.68808 -35.24831 -33.80966 -33.11835 -31.04807 -27.40098 -25.80636 -24.21851 -23.03016 -22.47239 -21.56392 -21.02227 -18.28235 -18.00051 -17.33471 -16.87846 -16.73837 -16.30048 -15.91044 -15.37402 -14.91075 -14.38257 -14.21089 -13.94683 -13.63611 -13.21738 -13.09450 -12.75943 -12.62394 -12.58065 -12.46698 -12.27084 -12.03697 -12.00322 -11.82374 -11.43985 -11.29573 -10.94609 -10.81329 -10.46370 -10.06947 -8.53401 -7.79558 -5.44697 1.43711 1.47286 1.55729 1.68508 2.28435 2.50297 3.15359 3.41571 3.51611 3.84850 4.17043 4.21621 4.30320 4.32352 4.32900 4.47145 4.55367 4.60433 4.75403 4.76300 4.94819 4.97125 5.01392 5.07955 5.08563 5.13694 5.34641 5.36791 5.47263 5.51399 5.55233 5.68943 5.85840 6.45162 6.62317 7.15301 7.31412 7.86489 8.35834 9.11268 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.005608 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.017129 B = 4991.904996 C = 5788.533742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.497 3.503 4 O -0.597 6.597 5 N -0.718 5.718 6 C 0.132 3.868 7 C -0.120 4.120 8 C 0.147 3.853 9 N -0.569 5.569 10 C -0.258 4.258 11 H 0.063 0.937 12 C -0.038 4.038 13 N -0.916 5.916 14 Si 0.952 3.048 15 H -0.287 1.287 16 H -0.294 1.294 17 H -0.267 1.267 18 C 0.101 3.899 19 C -0.179 4.179 20 C -0.223 4.223 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.089 0.911 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.416 0.584 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.249 0.751 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -13.730 -6.030 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.286 3.714 4 O -0.478 6.478 5 N -0.370 5.370 6 C 0.007 3.993 7 C -0.160 4.160 8 C 0.021 3.979 9 N -0.286 5.286 10 C -0.388 4.388 11 H 0.081 0.919 12 C -0.235 4.235 13 N -0.560 5.560 14 Si 0.780 3.220 15 H -0.214 1.214 16 H -0.220 1.220 17 H -0.192 1.192 18 C -0.007 4.007 19 C -0.217 4.217 20 C -0.264 4.264 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.107 0.893 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.252 0.748 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.345 -12.944 -5.899 15.196 hybrid contribution 0.575 0.358 1.175 1.356 sum -4.770 -12.586 -4.724 14.264 Atomic orbital electron populations 1.21540 0.93551 1.02680 1.01716 1.21703 0.98130 0.90854 1.06761 1.21731 0.81842 0.93332 0.74532 1.90677 1.56558 1.48681 1.51932 1.46072 1.07421 1.09001 1.74537 1.21078 0.94573 0.83188 1.00475 1.22062 0.91903 1.00161 1.01859 1.20767 0.82832 0.93604 1.00747 1.43615 1.01197 1.83517 1.00266 1.19248 1.06961 1.23786 0.88794 0.91913 1.25772 1.00679 0.94911 1.02170 1.70175 1.33974 1.21677 1.30173 0.85542 0.77073 0.78558 0.80874 1.21381 1.22035 1.19214 1.21566 0.90101 0.98888 0.90121 1.23037 0.95939 1.00702 1.02049 1.23281 1.10128 0.92679 1.00299 0.93922 0.93566 0.89253 0.86052 0.86545 0.74751 0.94236 0.92511 0.91071 0.92723 0.91527 0.95340 0.94124 0.86789 0.90751 0.86935 0.88104 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.20 71.98 0.66 -1.75 16 2 C -0.14 -2.18 6.42 29.85 0.19 -1.99 16 3 C 0.50 13.61 7.83 87.66 0.69 14.30 16 4 O -0.60 -22.49 15.98 -3.05 -0.05 -22.54 16 5 N -0.72 -18.66 5.56 -463.06 -2.57 -21.23 16 6 C 0.13 4.39 5.67 86.38 0.49 4.88 16 7 C -0.12 -4.24 5.65 30.59 0.17 -4.07 16 8 C 0.15 6.63 5.34 86.38 0.46 7.09 16 9 N -0.57 -27.17 2.78 -678.03 -1.88 -29.05 16 10 C -0.26 -13.57 8.63 84.03 0.73 -12.85 16 11 H 0.06 3.29 6.55 -2.91 -0.02 3.27 16 12 C -0.04 -2.08 4.96 84.86 0.42 -1.66 16 13 N -0.92 -53.22 11.33 21.65 0.25 -52.98 16 14 Si 0.95 43.93 29.61 68.60 2.03 45.96 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 C 0.10 4.08 6.56 45.00 0.30 4.38 16 19 C -0.18 -6.57 9.80 30.62 0.30 -6.27 16 20 C -0.22 -8.78 10.36 30.62 0.32 -8.47 16 21 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 22 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 23 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.12 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.42 7.95 8.47 -92.71 -0.79 7.16 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 3.55 5.35 -2.38 -0.01 3.53 16 32 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 34 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 35 H 0.07 3.08 6.37 -2.38 -0.02 3.06 16 36 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -67.95 315.90 2.74 -65.22 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.25 Total: 21.03 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.72 Total: -6.41 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.21 Total: -103.26 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.95 2.74 -65.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490360755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.659 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds