Wall clock time and date at job start Sun Mar 29 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46573 * 2 1 4 4 O 1.21274 * 120.00042 * 359.72068 * 3 2 1 5 5 N 1.34777 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.46934 * 120.63116 * 0.02562 * 5 3 2 7 7 C 1.53190 * 108.77492 * 126.36473 * 6 5 3 8 8 C 1.53042 * 109.31400 * 54.63338 * 7 6 5 9 9 C 1.53039 * 109.54061 * 298.63619 * 8 7 6 10 10 H 1.08996 * 109.49266 * 301.41316 * 9 8 7 11 11 C 1.53001 * 109.49769 * 181.34726 * 9 8 7 12 12 N 1.46499 * 109.46808 * 175.00092 * 11 9 8 13 13 C 1.36940 * 119.99760 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00009 * 359.97438 * 13 12 11 15 15 C 1.38805 * 119.99883 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00141 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00109 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47161 * 59.99954 * 17 15 13 19 19 H 1.48494 * 109.47381 * 180.02562 * 17 15 13 20 20 H 1.48511 * 109.46880 * 300.00478 * 17 15 13 21 21 C 1.46921 * 120.63090 * 179.71728 * 5 3 2 22 22 H 1.09001 * 109.47362 * 60.00657 * 1 2 3 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 299.99934 * 1 2 3 25 25 H 1.09000 * 109.47486 * 240.00066 * 2 1 3 26 26 H 1.09001 * 109.47362 * 119.99343 * 2 1 3 27 27 H 1.08990 * 109.58615 * 246.15371 * 6 5 3 28 28 H 1.09002 * 109.58604 * 6.58151 * 6 5 3 29 29 H 1.08998 * 109.49691 * 174.59112 * 7 6 5 30 30 H 1.09007 * 109.50153 * 294.68435 * 7 6 5 31 31 H 1.09005 * 109.45796 * 58.65732 * 8 7 6 32 32 H 1.09001 * 109.45914 * 178.60946 * 8 7 6 33 33 H 1.09004 * 109.46951 * 294.99727 * 11 9 8 34 34 H 1.08996 * 109.47352 * 54.99727 * 11 9 8 35 35 H 0.96996 * 120.00460 * 359.97438 * 12 11 9 36 36 H 0.97007 * 119.99787 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.58730 * 353.42164 * 21 5 3 38 38 H 1.09004 * 109.58544 * 113.84684 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 -0.0051 5 7 3.3573 1.6673 0.0005 6 6 4.3244 0.5611 0.0005 7 6 5.2967 0.7563 -1.1670 8 6 5.9310 2.1457 -1.0706 9 6 4.8397 3.2144 -1.1671 10 1 4.3035 3.1026 -2.1094 11 6 5.4782 4.6034 -1.1044 12 7 4.4488 5.6240 -1.3162 13 6 4.7871 6.9508 -1.3025 14 1 5.8127 7.2449 -1.1351 15 6 3.8119 7.9178 -1.5037 16 7 2.5618 7.5595 -1.7071 17 14 4.2732 9.7279 -1.4843 18 1 5.2700 9.9961 -2.5518 19 1 3.0599 10.5506 -1.7212 20 1 4.8566 10.0759 -0.1636 21 6 3.8622 3.0470 -0.0057 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 4.8771 0.5590 0.9399 28 1 3.7969 -0.3855 -0.1176 29 1 6.0767 -0.0037 -1.1218 30 1 4.7562 0.6678 -2.1095 31 1 6.4507 2.2424 -0.1173 32 1 6.6418 2.2778 -1.8864 33 1 5.9377 4.7482 -0.1266 34 1 6.2395 4.6887 -1.8798 35 1 3.5276 5.3599 -1.4661 36 1 1.8802 8.2353 -1.8473 37 1 3.0299 3.7401 -0.1279 38 1 4.3764 3.2521 0.9333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491133368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:46 Heat of formation + Delta-G solvation = -40.790111 kcal Electronic energy + Delta-G solvation = -17724.096295 eV Core-core repulsion = 14987.106245 eV Total energy + Delta-G solvation = -2736.990050 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06871 -37.61143 -34.88233 -33.08958 -32.47072 -31.62327 -29.69908 -26.08522 -25.44729 -23.47887 -23.04504 -21.34233 -19.98486 -18.70152 -17.26302 -16.81613 -15.71989 -15.61983 -14.71701 -14.61378 -14.20321 -13.78871 -13.52285 -13.40889 -12.88881 -12.75245 -12.47171 -12.40598 -12.21349 -11.73505 -11.39608 -11.20512 -11.05213 -10.97330 -10.78899 -10.60855 -10.37209 -10.24286 -9.97355 -9.59900 -9.47643 -8.81273 -8.42160 -6.85025 -5.67535 -2.97501 2.83168 3.16379 3.49150 3.52881 3.54813 4.55104 4.63871 4.74764 4.90282 5.00779 5.01785 5.05345 5.25140 5.34208 5.37921 5.55970 5.65471 5.68390 5.73013 5.83926 5.87644 5.90652 6.00671 6.13168 6.16246 6.21449 6.24783 6.43458 6.60232 6.72685 6.81741 6.92230 7.60163 7.75794 8.40553 8.50182 9.60947 10.19231 10.53483 11.54755 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027122 B = 0.005922 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.138533 B = 4726.946103 C = 5612.830242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.505 3.495 4 O -0.531 6.531 5 N -0.615 5.615 6 C 0.107 3.893 7 C -0.134 4.134 8 C -0.112 4.112 9 C -0.107 4.107 10 H 0.073 0.927 11 C 0.161 3.839 12 N -0.733 5.733 13 C -0.243 4.243 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.119 3.881 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.103 0.897 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -19.605 3.352 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.293 3.707 4 O -0.407 6.407 5 N -0.349 5.349 6 C -0.016 4.016 7 C -0.172 4.172 8 C -0.150 4.150 9 C -0.127 4.127 10 H 0.091 0.909 11 C 0.033 3.967 12 N -0.378 5.378 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.003 4.003 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.194 -18.945 3.369 19.506 hybrid contribution 0.109 0.908 -0.088 0.919 sum 3.303 -18.037 3.281 18.628 Atomic orbital electron populations 1.21539 0.93177 1.01203 1.03600 1.21646 0.98512 0.94334 1.03693 1.20765 0.81901 0.91736 0.76263 1.90761 1.54600 1.46439 1.48898 1.48234 1.05390 1.07706 1.73531 1.21721 0.91269 0.89699 0.98926 1.21918 0.98601 0.98038 0.98685 1.21520 0.97758 0.93519 1.02248 1.21599 0.96124 0.95933 0.99031 0.90905 1.20629 0.92132 0.86258 0.97709 1.42411 1.06735 1.01742 1.86889 1.19163 0.93823 0.82856 1.41588 0.91288 1.24758 0.95443 0.97936 1.02749 1.69671 1.00118 1.32519 1.55528 0.86277 0.76892 0.85310 0.77739 1.21322 1.21698 1.21297 1.21604 0.98917 0.81819 0.97911 0.91848 0.92370 0.91975 0.89228 0.89334 0.91478 0.90077 0.90948 0.91543 0.91796 0.91556 0.96300 0.96114 0.78078 0.93430 0.87916 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.14 -1.47 4.77 -27.88 -0.13 -1.60 16 3 C 0.51 7.87 7.70 -10.98 -0.08 7.79 16 4 O -0.53 -11.02 15.39 5.56 0.09 -10.93 16 5 N -0.61 -8.82 2.98 -173.05 -0.52 -9.34 16 6 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 7 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 8 C -0.11 -1.39 5.17 -26.69 -0.14 -1.53 16 9 C -0.11 -1.80 2.36 -90.74 -0.21 -2.01 16 10 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 11 C 0.16 3.31 5.66 -4.04 -0.02 3.29 16 12 N -0.73 -19.38 5.38 -59.91 -0.32 -19.70 16 13 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -29.49 13.06 55.49 0.72 -28.77 16 17 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.12 2.08 5.49 -3.95 -0.02 2.06 16 22 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.09 0.75 7.69 -51.93 -0.40 0.35 16 26 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.39 10.92 6.89 -40.82 -0.28 10.64 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.10 2.26 6.20 -51.93 -0.32 1.94 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -34.34 304.35 -7.51 -41.84 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.34 Total: 5.50 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.70 Total: -1.26 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.11 Total: -57.81 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.34 -7.51 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491133368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.054 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds