Wall clock time and date at job start Sun Mar 29 2020 22:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46817 * 2 1 4 4 O 1.21279 * 120.00453 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99950 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99986 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46854 * 180.02562 * 6 5 3 8 8 H 1.08993 * 109.58491 * 300.31820 * 7 6 5 9 9 C 1.53191 * 109.58514 * 180.02562 * 7 6 5 10 10 C 1.53040 * 109.31182 * 185.43231 * 9 7 6 11 11 C 1.53039 * 109.53379 * 61.37237 * 10 9 7 12 12 C 1.53197 * 109.31098 * 298.62779 * 11 10 9 13 13 N 1.46929 * 109.58662 * 60.60205 * 7 6 5 14 14 C 1.36934 * 120.63141 * 353.53565 * 13 7 6 15 15 H 1.08005 * 120.00288 * 30.83129 * 14 13 7 16 16 C 1.38809 * 120.00178 * 210.82973 * 14 13 7 17 17 N 1.31617 * 120.00259 * 13.76011 * 16 14 13 18 18 Si 1.86804 * 120.00257 * 193.75498 * 16 14 13 19 19 H 1.48510 * 109.46876 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47068 * 119.99871 * 18 16 14 21 21 H 1.48492 * 109.47620 * 239.99988 * 18 16 14 22 22 H 1.09000 * 109.47157 * 60.00016 * 1 2 3 23 23 H 1.09004 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47246 * 299.99877 * 1 2 3 25 25 H 1.09004 * 109.47022 * 240.00567 * 2 1 3 26 26 H 1.09000 * 109.47157 * 119.99984 * 2 1 3 27 27 H 0.97000 * 119.99456 * 0.02562 * 5 3 2 28 28 H 1.08992 * 109.47000 * 60.00357 * 6 5 3 29 29 H 1.09000 * 109.46993 * 300.00239 * 6 5 3 30 30 H 1.08998 * 109.50027 * 305.39266 * 9 7 6 31 31 H 1.09003 * 109.49125 * 65.48478 * 9 7 6 32 32 H 1.08997 * 109.45814 * 181.38903 * 10 9 7 33 33 H 1.08993 * 109.46374 * 301.35979 * 10 9 7 34 34 H 1.08999 * 109.50220 * 58.58700 * 11 10 9 35 35 H 1.09003 * 109.49264 * 178.68328 * 11 10 9 36 36 H 1.09003 * 109.58637 * 174.42677 * 12 11 10 37 37 H 1.08997 * 109.58747 * 294.70977 * 12 11 10 38 38 H 0.96998 * 120.00574 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3757 3.0484 0.0010 8 1 5.7411 2.5296 0.8871 9 6 5.8892 4.4917 0.0022 10 6 7.4135 4.4867 -0.1347 11 6 7.8058 3.8356 -1.4629 12 6 7.3141 2.3849 -1.4808 13 7 5.8682 2.3694 -1.2054 14 6 4.9990 1.7389 -2.0551 15 1 3.9906 2.1088 -2.1684 16 6 5.4138 0.6244 -2.7710 17 7 6.5314 0.0107 -2.4441 18 14 4.3859 -0.0049 -4.1982 19 1 3.1858 0.8547 -4.3607 20 1 5.1933 0.0325 -5.4441 21 1 3.9618 -1.4015 -3.9250 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 3.9877 0.9299 0.0005 28 1 3.4821 3.5619 0.8911 29 1 3.4826 3.5625 -0.8888 30 1 5.4505 5.0347 -0.8349 31 1 5.6095 4.9764 0.9376 32 1 7.7837 5.5115 -0.1093 33 1 7.8502 3.9224 0.6892 34 1 7.3492 4.3848 -2.2863 35 1 8.8904 3.8535 -1.5704 36 1 7.5031 1.9470 -2.4610 37 1 7.8395 1.8115 -0.7171 38 1 6.8211 -0.7683 -2.9441 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491190751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:53 Heat of formation + Delta-G solvation = -34.059412 kcal Electronic energy + Delta-G solvation = -18400.895601 eV Core-core repulsion = 15664.197416 eV Total energy + Delta-G solvation = -2736.698185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17498 -37.68612 -34.12238 -33.06231 -32.38967 -30.62027 -29.89850 -26.22900 -25.03697 -23.21367 -22.13492 -20.63482 -19.60178 -19.03500 -16.86961 -16.05016 -15.67932 -15.13989 -14.85386 -14.06535 -13.96741 -13.48314 -13.24585 -13.01678 -12.75408 -12.40544 -12.19487 -11.84715 -11.65723 -11.42177 -11.17794 -10.98568 -10.80339 -10.78798 -10.53875 -10.28322 -10.14256 -10.00194 -9.54110 -9.44013 -9.13287 -8.58990 -8.16510 -6.67209 -5.85360 -3.31322 3.28604 3.31927 3.40197 3.43864 3.97522 4.41964 5.21784 5.28629 5.31708 5.43381 5.47717 5.52604 5.63769 5.68696 5.92684 5.98001 6.05132 6.09133 6.16165 6.24351 6.34396 6.36326 6.42605 6.45171 6.59659 6.70548 6.72840 6.85342 6.99192 7.25611 7.36869 7.63607 7.78572 8.34020 8.39659 8.95996 9.14878 9.76486 10.35151 11.21791 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.010826 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.772281 B = 2585.854607 C = 3820.062443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C 0.505 3.495 4 O -0.569 6.569 5 N -0.696 5.696 6 C 0.134 3.866 7 C 0.160 3.840 8 H 0.031 0.969 9 C -0.127 4.127 10 C -0.107 4.107 11 C -0.144 4.144 12 C 0.173 3.827 13 N -0.589 5.589 14 C -0.248 4.248 15 H 0.071 0.929 16 C 0.007 3.993 17 N -0.900 5.900 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.289 1.289 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.414 0.586 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.018 0.982 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 2.047 5.158 5.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C 0.291 3.709 4 O -0.450 6.450 5 N -0.347 5.347 6 C 0.010 3.990 7 C 0.053 3.947 8 H 0.049 0.951 9 C -0.167 4.167 10 C -0.145 4.145 11 C -0.183 4.183 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.378 4.378 15 H 0.089 0.911 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.216 1.216 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.252 0.748 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.037 0.963 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.642 2.541 5.079 6.264 hybrid contribution 0.019 -0.744 -0.908 1.174 sum -2.623 1.798 4.171 5.245 Atomic orbital electron populations 1.21486 0.93744 1.00834 1.02938 1.21595 0.97873 0.94865 1.04265 1.20606 0.82617 0.91328 0.76307 1.90615 1.55813 1.46644 1.51922 1.46041 1.06618 1.09700 1.72292 1.21256 0.94063 0.83186 1.00504 1.20730 0.90935 0.92037 0.90995 0.95135 1.21943 0.96182 0.98118 1.00488 1.21361 0.95733 0.99012 0.98396 1.22190 0.98811 1.00812 0.96510 1.20801 0.83102 0.89994 1.01378 1.44149 1.03090 1.62072 1.21974 1.19257 0.95493 1.05472 1.17544 0.91148 1.25070 0.97691 0.96096 1.00391 1.70009 1.23505 1.20588 1.40358 0.86384 0.80017 0.78497 0.82977 1.20187 1.21563 1.21597 0.92224 0.92673 0.92374 0.88922 0.89479 0.74827 0.92880 0.91779 0.92110 0.93053 0.93727 0.92885 0.92842 0.93519 0.89766 0.96349 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.20 37.16 0.34 -1.49 16 2 C -0.15 -2.22 6.42 -27.88 -0.18 -2.40 16 3 C 0.51 9.63 7.83 -10.98 -0.09 9.55 16 4 O -0.57 -12.48 15.98 5.56 0.09 -12.39 16 5 N -0.70 -13.44 3.86 -60.29 -0.23 -13.67 16 6 C 0.13 2.59 4.43 -4.04 -0.02 2.57 16 7 C 0.16 3.11 3.00 -67.60 -0.20 2.91 16 8 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 9 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 10 C -0.11 -1.77 5.88 -26.69 -0.16 -1.92 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.84 16 12 C 0.17 3.89 5.28 -3.56 -0.02 3.87 16 13 N -0.59 -13.47 2.98 -164.55 -0.49 -13.96 16 14 C -0.25 -6.18 7.01 -15.06 -0.11 -6.28 16 15 H 0.07 1.82 5.85 -52.48 -0.31 1.51 16 16 C 0.01 0.17 4.98 -17.43 -0.09 0.08 16 17 N -0.90 -24.28 11.22 55.49 0.62 -23.65 16 18 Si 0.89 20.90 29.58 -169.99 -5.03 15.87 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 25 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.41 8.24 7.43 -40.82 -0.30 7.94 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.36 7.39 -51.93 -0.38 0.98 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 2.15 6.19 -51.93 -0.32 1.82 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -28.16 299.51 -7.71 -35.87 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.37 Total: 5.70 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.82 Total: 1.73 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.10 Total: -51.29 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.16 -7.71 -35.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491190751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.809 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds