Wall clock time and date at job start Sun Mar 29 2020 22:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46817 * 2 1 4 4 O 1.21279 * 120.00453 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99950 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99986 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46854 * 180.02562 * 6 5 3 8 8 H 1.08993 * 109.58491 * 300.31820 * 7 6 5 9 9 C 1.53191 * 109.58514 * 180.02562 * 7 6 5 10 10 C 1.53040 * 109.31182 * 185.43231 * 9 7 6 11 11 C 1.53039 * 109.53379 * 61.37237 * 10 9 7 12 12 C 1.53197 * 109.31098 * 298.62779 * 11 10 9 13 13 N 1.46929 * 109.58662 * 60.60205 * 7 6 5 14 14 C 1.36934 * 120.63141 * 353.53565 * 13 7 6 15 15 H 1.08005 * 120.00288 * 30.83129 * 14 13 7 16 16 C 1.38809 * 120.00178 * 210.82973 * 14 13 7 17 17 N 1.31617 * 120.00259 * 13.76011 * 16 14 13 18 18 Si 1.86804 * 120.00257 * 193.75498 * 16 14 13 19 19 H 1.48510 * 109.46876 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47068 * 119.99871 * 18 16 14 21 21 H 1.48492 * 109.47620 * 239.99988 * 18 16 14 22 22 H 1.09000 * 109.47157 * 60.00016 * 1 2 3 23 23 H 1.09004 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47246 * 299.99877 * 1 2 3 25 25 H 1.09004 * 109.47022 * 240.00567 * 2 1 3 26 26 H 1.09000 * 109.47157 * 119.99984 * 2 1 3 27 27 H 0.97000 * 119.99456 * 0.02562 * 5 3 2 28 28 H 1.08992 * 109.47000 * 60.00357 * 6 5 3 29 29 H 1.09000 * 109.46993 * 300.00239 * 6 5 3 30 30 H 1.08998 * 109.50027 * 305.39266 * 9 7 6 31 31 H 1.09003 * 109.49125 * 65.48478 * 9 7 6 32 32 H 1.08997 * 109.45814 * 181.38903 * 10 9 7 33 33 H 1.08993 * 109.46374 * 301.35979 * 10 9 7 34 34 H 1.08999 * 109.50220 * 58.58700 * 11 10 9 35 35 H 1.09003 * 109.49264 * 178.68328 * 11 10 9 36 36 H 1.09003 * 109.58637 * 174.42677 * 12 11 10 37 37 H 1.08997 * 109.58747 * 294.70977 * 12 11 10 38 38 H 0.96998 * 120.00574 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3757 3.0484 0.0010 8 1 5.7411 2.5296 0.8871 9 6 5.8892 4.4917 0.0022 10 6 7.4135 4.4867 -0.1347 11 6 7.8058 3.8356 -1.4629 12 6 7.3141 2.3849 -1.4808 13 7 5.8682 2.3694 -1.2054 14 6 4.9990 1.7389 -2.0551 15 1 3.9906 2.1088 -2.1684 16 6 5.4138 0.6244 -2.7710 17 7 6.5314 0.0107 -2.4441 18 14 4.3859 -0.0049 -4.1982 19 1 3.1858 0.8547 -4.3607 20 1 5.1933 0.0325 -5.4441 21 1 3.9618 -1.4015 -3.9250 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 3.9877 0.9299 0.0005 28 1 3.4821 3.5619 0.8911 29 1 3.4826 3.5625 -0.8888 30 1 5.4505 5.0347 -0.8349 31 1 5.6095 4.9764 0.9376 32 1 7.7837 5.5115 -0.1093 33 1 7.8502 3.9224 0.6892 34 1 7.3492 4.3848 -2.2863 35 1 8.8904 3.8535 -1.5704 36 1 7.5031 1.9470 -2.4610 37 1 7.8395 1.8115 -0.7171 38 1 6.8211 -0.7683 -2.9441 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491190751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:53 Heat of formation + Delta-G solvation = -50.797625 kcal Electronic energy + Delta-G solvation = -18401.621425 eV Core-core repulsion = 15664.197416 eV Total energy + Delta-G solvation = -2737.424008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73206 -39.28820 -35.67710 -34.88388 -33.67783 -32.20133 -31.63808 -27.83260 -26.73093 -24.59391 -23.77737 -22.20204 -21.12769 -20.61189 -18.55691 -17.68034 -17.34702 -16.68922 -16.38396 -15.82409 -15.59851 -14.93087 -14.73483 -14.59298 -14.28509 -14.03047 -13.66442 -13.35701 -13.08677 -12.83676 -12.77840 -12.58546 -12.54715 -12.29693 -12.02135 -12.00268 -11.80099 -11.53680 -11.14878 -11.09060 -10.68685 -10.51546 -9.79232 -8.55487 -7.82051 -5.28774 1.40355 1.47479 1.54261 1.79808 2.47786 2.54391 3.33200 3.58447 3.95378 4.01773 4.21451 4.25376 4.27956 4.30527 4.43724 4.55946 4.65257 4.69896 4.84343 4.87409 4.99846 5.00481 5.08574 5.14637 5.21475 5.28194 5.32933 5.39215 5.46211 5.63761 5.68790 5.77064 5.84099 6.45225 6.78923 7.20232 7.42515 7.88957 8.43160 9.22802 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.010826 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.772281 B = 2585.854607 C = 3820.062443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.143 4.143 3 C 0.499 3.501 4 O -0.601 6.601 5 N -0.698 5.698 6 C 0.139 3.861 7 C 0.160 3.840 8 H 0.033 0.967 9 C -0.123 4.123 10 C -0.102 4.102 11 C -0.136 4.136 12 C 0.177 3.823 13 N -0.602 5.602 14 C -0.234 4.234 15 H 0.060 0.940 16 C -0.034 4.034 17 N -0.925 5.925 18 Si 0.939 3.061 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.285 1.285 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.412 0.588 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.002 0.998 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 2.532 6.235 7.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.182 4.182 3 C 0.287 3.713 4 O -0.484 6.484 5 N -0.348 5.348 6 C 0.014 3.986 7 C 0.054 3.946 8 H 0.051 0.949 9 C -0.162 4.162 10 C -0.140 4.140 11 C -0.175 4.175 12 C 0.052 3.948 13 N -0.327 5.327 14 C -0.365 4.365 15 H 0.078 0.922 16 C -0.230 4.230 17 N -0.572 5.572 18 Si 0.769 3.231 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.211 1.211 22 H 0.061 0.939 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.248 0.752 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.808 3.038 6.169 7.428 hybrid contribution 0.065 -0.853 -1.214 1.485 sum -2.743 2.185 4.956 6.071 Atomic orbital electron populations 1.21486 0.92655 1.02543 1.01964 1.21671 0.98766 0.92236 1.05547 1.21325 0.82100 0.92723 0.75179 1.90594 1.56386 1.48063 1.53355 1.46110 1.06897 1.09571 1.72188 1.21209 0.93978 0.83305 1.00075 1.20882 0.90942 0.93381 0.89435 0.94913 1.21902 0.96556 0.96017 1.01755 1.21345 0.95220 1.00547 0.96881 1.22052 0.99799 0.97790 0.97823 1.20626 0.83071 0.92316 0.98798 1.44333 1.03038 1.62221 1.23080 1.19231 0.95169 1.04773 1.17279 0.92222 1.25506 0.98591 0.96742 1.02199 1.70116 1.24739 1.21042 1.41261 0.85640 0.78569 0.78100 0.80770 1.20673 1.22398 1.21109 0.93937 0.89591 0.92629 0.88889 0.86723 0.75161 0.91194 0.94186 0.92979 0.90011 0.90737 0.92334 0.93703 0.91662 0.93284 0.97952 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 9.20 71.98 0.66 -2.68 16 2 C -0.14 -4.09 6.42 29.85 0.19 -3.90 16 3 C 0.50 18.67 7.83 87.66 0.69 19.35 16 4 O -0.60 -26.19 15.98 -3.02 -0.05 -26.23 16 5 N -0.70 -26.59 3.86 -463.06 -1.79 -28.38 16 6 C 0.14 5.24 4.43 86.38 0.38 5.62 16 7 C 0.16 6.01 3.00 44.97 0.13 6.14 16 8 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 9 C -0.12 -3.85 5.37 30.67 0.16 -3.68 16 10 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 11 C -0.14 -4.82 6.08 30.67 0.19 -4.63 16 12 C 0.18 8.00 5.28 86.31 0.46 8.46 16 13 N -0.60 -27.47 2.98 -674.52 -2.01 -29.48 16 14 C -0.23 -11.74 7.01 84.03 0.59 -11.15 16 15 H 0.06 3.12 5.85 -2.91 -0.02 3.10 16 16 C -0.03 -1.78 4.98 84.86 0.42 -1.35 16 17 N -0.93 -50.70 11.22 21.65 0.24 -50.45 16 18 Si 0.94 43.41 29.58 68.60 2.03 45.44 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 23 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 25 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 26 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.41 16.20 7.43 -92.71 -0.69 15.51 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.70 7.39 -2.39 -0.02 1.69 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.55 6.19 -2.39 -0.01 2.53 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -60.63 299.51 2.82 -57.81 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.34 Total: 21.98 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.06 Total: 9.32 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.56 Total: -108.31 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -60.63 2.82 -57.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491190751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.016 kcal (2) G-P(sol) polarization free energy of solvation -60.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds