Wall clock time and date at job start Sun Mar 29 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.54715 * 2 1 4 4 C 1.53075 * 117.49480 * 214.27736 * 2 1 3 5 5 C 1.52996 * 117.50098 * 145.67410 * 2 1 3 6 6 H 1.08998 * 117.49966 * 359.96846 * 5 2 1 7 7 C 1.50703 * 117.49546 * 214.98169 * 5 2 1 8 8 O 1.21281 * 120.00024 * 0.08123 * 7 5 2 9 9 N 1.34783 * 119.99629 * 180.36019 * 7 5 2 10 10 C 1.46492 * 119.99949 * 359.72091 * 9 7 5 11 11 C 1.46500 * 119.99713 * 179.72077 * 9 7 5 12 12 C 1.53004 * 109.47089 * 90.00151 * 11 9 7 13 13 N 1.46500 * 109.47089 * 179.97438 * 12 11 9 14 14 C 1.46494 * 119.99751 * 269.99897 * 13 12 11 15 15 C 1.36940 * 120.00096 * 89.99827 * 13 12 11 16 16 H 1.07996 * 119.99686 * 22.34809 * 15 13 12 17 17 C 1.38813 * 120.00043 * 202.34536 * 15 13 12 18 18 N 1.31617 * 119.99467 * 11.34378 * 17 15 13 19 19 Si 1.86798 * 119.99995 * 191.34537 * 17 15 13 20 20 H 1.48501 * 109.47160 * 89.99855 * 19 17 15 21 21 H 1.48499 * 109.46897 * 209.99924 * 19 17 15 22 22 H 1.48499 * 109.47063 * 329.99902 * 19 17 15 23 23 H 1.08994 * 109.46753 * 274.32454 * 1 2 3 24 24 H 1.09001 * 109.46981 * 34.33113 * 1 2 3 25 25 H 1.09000 * 109.46935 * 154.32935 * 1 2 3 26 26 H 1.08995 * 117.51761 * 145.03523 * 4 2 1 27 27 H 1.08997 * 117.49153 * 359.97438 * 4 2 1 28 28 H 1.09004 * 109.47103 * 90.00367 * 10 9 7 29 29 H 1.08996 * 109.47256 * 209.99708 * 10 9 7 30 30 H 1.08998 * 109.47398 * 330.00406 * 10 9 7 31 31 H 1.08995 * 109.47150 * 210.00015 * 11 9 7 32 32 H 1.09004 * 109.47013 * 330.00063 * 11 9 7 33 33 H 1.09008 * 109.46748 * 299.99794 * 12 11 9 34 34 H 1.08989 * 109.46984 * 59.99612 * 12 11 9 35 35 H 1.08999 * 109.47330 * 94.21321 * 14 13 12 36 36 H 1.09002 * 109.47099 * 214.21248 * 14 13 12 37 37 H 1.09002 * 109.47366 * 334.20962 * 14 13 12 38 38 H 0.97003 * 119.99222 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2367 -1.1220 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2692 7 6 3.5293 -0.7805 1.4610 8 8 3.9710 0.3475 1.4023 9 7 4.1976 -1.7313 2.1437 10 6 3.6641 -3.0938 2.2146 11 6 5.4575 -1.4021 2.8150 12 6 5.1681 -0.9403 4.2447 13 7 6.4281 -0.6116 4.9161 14 6 7.1539 -1.6454 5.6582 15 6 6.9273 0.6618 4.8500 16 1 6.2677 1.4899 4.6369 17 6 8.2811 0.8882 5.0570 18 7 9.1196 -0.1257 5.0942 19 14 8.9127 2.6316 5.2827 20 1 8.8870 2.9845 6.7250 21 1 10.3054 2.7230 4.7755 22 1 8.0479 3.5731 4.5272 23 1 -0.3632 0.0775 1.0247 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9262 -0.4452 26 1 3.1719 -0.8770 -1.2681 27 1 1.6113 -1.8599 -1.2672 28 1 4.0504 -3.6791 1.3801 29 1 3.9691 -3.5550 3.1538 30 1 2.5758 -3.0610 2.1624 31 1 6.0969 -2.2844 2.8406 32 1 5.9615 -0.6037 2.2702 33 1 4.5287 -0.0578 4.2190 34 1 4.6641 -1.7385 4.7893 35 1 7.9044 -2.0983 5.0104 36 1 7.6432 -1.1963 6.5225 37 1 6.4541 -2.4107 5.9938 38 1 10.0657 0.0326 5.2385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496758241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:44 Heat of formation + Delta-G solvation = -7.303490 kcal Electronic energy + Delta-G solvation = -17508.914025 eV Core-core repulsion = 14773.376064 eV Total energy + Delta-G solvation = -2735.537961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16497 -38.30338 -37.42720 -36.38131 -33.49189 -30.67306 -29.38472 -27.95968 -27.49377 -26.05497 -23.91816 -22.33044 -21.56389 -19.90743 -18.87060 -18.27095 -17.30916 -16.93426 -16.29905 -15.78265 -15.37396 -15.04135 -14.96534 -14.35310 -14.03560 -13.98034 -13.89198 -13.61818 -13.20419 -13.10979 -12.88472 -12.81677 -12.70515 -12.44514 -12.28024 -12.09762 -12.05191 -11.65081 -11.29650 -10.95327 -10.75808 -10.71208 -9.76376 -8.80753 -7.89013 -5.36928 1.41373 1.42525 1.51403 1.52472 2.01582 2.48098 2.86914 3.25256 3.52376 3.75245 3.80299 3.87731 4.05912 4.18008 4.40824 4.43712 4.44668 4.57833 4.70541 4.78491 4.82359 4.87267 4.93696 4.94714 4.99597 5.08892 5.14440 5.24262 5.31166 5.44123 5.53549 5.61476 5.69951 6.28308 6.47968 7.11215 7.22986 7.81137 8.21965 9.14215 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031530 B = 0.005458 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.821875 B = 5128.628980 C = 5703.967642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.136 4.136 3 H 0.081 0.919 4 C -0.131 4.131 5 C -0.190 4.190 6 H 0.158 0.842 7 C 0.522 3.478 8 O -0.597 6.597 9 N -0.609 5.609 10 C 0.073 3.927 11 C 0.111 3.889 12 C 0.150 3.850 13 N -0.618 5.618 14 C 0.177 3.823 15 C -0.267 4.267 16 H 0.055 0.945 17 C -0.047 4.047 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.279 1.279 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.007 0.993 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 -8.901 -9.158 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.155 4.155 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.210 4.210 6 H 0.175 0.825 7 C 0.312 3.688 8 O -0.478 6.478 9 N -0.341 5.341 10 C -0.068 4.068 11 C -0.015 4.015 12 C 0.023 3.977 13 N -0.341 5.341 14 C 0.033 3.967 15 C -0.397 4.397 16 H 0.073 0.927 17 C -0.242 4.242 18 N -0.581 5.581 19 Si 0.795 3.205 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.159 0.841 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.967 -8.361 -9.121 21.000 hybrid contribution 1.209 1.144 0.268 1.686 sum -15.758 -7.217 -8.853 19.462 Atomic orbital electron populations 1.21376 0.89675 1.03545 1.02550 1.22434 0.96964 0.93878 1.02178 0.90049 1.23191 1.02574 1.01414 0.89641 1.22392 0.95882 1.06242 0.96500 0.82503 1.20614 0.86029 0.83944 0.78198 1.90696 1.70161 1.23458 1.63528 1.48040 1.23107 1.11957 1.51040 1.22114 1.00968 0.80259 1.03442 1.21988 0.85060 0.99791 0.94612 1.21120 0.87667 0.97740 0.91202 1.44176 1.23984 1.08044 1.57929 1.20610 0.92981 0.89046 0.94065 1.19418 0.91458 0.85099 1.43716 0.92676 1.25725 0.95904 1.01026 1.01551 1.70206 1.02228 1.30465 1.55183 0.85274 0.77182 0.80048 0.78008 1.20492 1.21392 1.20417 0.91963 0.91291 0.90039 0.90260 0.84075 0.91144 0.90201 0.88231 0.90636 0.94751 0.95900 0.91349 0.97449 0.96170 0.94496 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.19 71.98 0.73 -0.87 16 2 C -0.14 -2.93 5.92 -10.77 -0.06 -2.99 16 3 H 0.08 2.34 7.67 -2.39 -0.02 2.32 16 4 C -0.13 -2.39 9.88 30.62 0.30 -2.08 16 5 C -0.19 -4.21 5.00 -11.54 -0.06 -4.27 16 6 H 0.16 2.33 6.45 -2.39 -0.02 2.31 16 7 C 0.52 18.01 7.46 87.66 0.65 18.66 16 8 O -0.60 -27.73 15.84 -3.03 -0.05 -27.77 16 9 N -0.61 -19.37 2.87 -846.76 -2.43 -21.80 16 10 C 0.07 1.39 10.26 127.77 1.31 2.70 16 11 C 0.11 4.59 5.73 86.38 0.50 5.09 16 12 C 0.15 6.67 6.03 86.38 0.52 7.19 16 13 N -0.62 -33.12 2.93 -726.95 -2.13 -35.25 16 14 C 0.18 8.93 9.01 127.77 1.15 10.08 16 15 C -0.27 -15.98 9.67 84.03 0.81 -15.17 16 16 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 17 C -0.05 -2.77 5.13 84.86 0.44 -2.34 16 18 N -0.93 -56.92 10.58 21.65 0.23 -56.69 16 19 Si 0.97 48.03 29.57 68.60 2.03 50.06 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 0.76 7.90 -2.39 -0.02 0.74 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.14 1.48 8.05 -2.39 -0.02 1.46 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 30 H 0.10 1.27 6.00 -2.39 -0.01 1.25 16 31 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 32 H 0.03 1.75 7.42 -2.39 -0.02 1.73 16 33 H 0.02 1.11 8.03 -2.38 -0.02 1.09 16 34 H 0.07 2.56 7.86 -2.39 -0.02 2.54 16 35 H 0.01 0.39 7.42 -2.39 -0.02 0.37 16 36 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 37 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -76.80 314.10 4.96 -71.84 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.02 Total: 3.62 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.29 Total: 16.01 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -4.33 Total: -113.74 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -76.80 4.96 -71.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496758241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.533 kcal (2) G-P(sol) polarization free energy of solvation -76.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds