Wall clock time and date at job start Sun Mar 29 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.52995 * 109.47023 * 120.00103 * 2 1 3 5 5 C 1.53001 * 109.47285 * 185.00026 * 4 2 1 6 6 N 1.46498 * 109.47542 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00256 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99943 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99795 * 179.97438 * 7 6 5 10 10 H 1.08994 * 115.55301 * 34.41976 * 9 7 6 11 11 C 1.53001 * 117.49477 * 248.74225 * 9 7 6 12 12 C 1.53001 * 117.49306 * 180.08196 * 9 7 6 13 13 H 1.09004 * 117.50106 * 0.02562 * 12 9 7 14 14 C 1.52998 * 117.50056 * 214.97359 * 12 9 7 15 15 N 1.46504 * 109.47097 * 240.00057 * 2 1 3 16 16 C 1.36934 * 119.99567 * 85.00242 * 15 2 1 17 17 H 1.08001 * 120.00537 * 359.97438 * 16 15 2 18 18 C 1.38811 * 119.99798 * 179.97438 * 16 15 2 19 19 N 1.31624 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 299.99987 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00079 * 20 18 16 24 24 H 1.08995 * 109.47001 * 60.00028 * 1 2 3 25 25 H 1.09007 * 109.46641 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47561 * 299.99379 * 1 2 3 27 27 H 1.08996 * 109.47626 * 305.00309 * 4 2 1 28 28 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 29 29 H 1.09000 * 109.47026 * 300.00158 * 5 4 2 30 30 H 1.09000 * 109.46786 * 59.99897 * 5 4 2 31 31 H 0.97002 * 119.99616 * 0.02562 * 6 5 4 32 32 H 1.08995 * 117.50310 * 359.97438 * 11 9 7 33 33 H 1.09001 * 117.49519 * 145.00308 * 11 9 7 34 34 H 1.09008 * 109.46516 * 60.00652 * 14 12 9 35 35 H 1.08994 * 109.47658 * 179.97438 * 14 12 9 36 36 H 1.09001 * 109.47226 * 300.01188 * 14 12 9 37 37 H 0.97000 * 119.99825 * 264.99423 * 15 2 1 38 38 H 0.97005 * 119.99717 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0532 -1.3045 2.5095 7 6 5.3741 -1.3399 2.7752 8 8 6.1584 -0.8000 2.0240 9 6 5.8763 -2.0504 4.0056 10 1 5.3170 -2.9396 4.2963 11 6 6.4695 -1.1917 5.1244 12 6 7.3863 -2.0536 4.2525 13 1 8.0163 -1.5414 3.5252 14 6 7.9954 -3.3043 4.8893 15 7 2.0183 -0.6906 -1.1962 16 6 2.1491 -0.0074 -2.3757 17 1 1.8919 1.0404 -2.4243 18 6 2.6123 -0.6616 -3.5090 19 7 2.9263 -1.9384 -3.4497 20 14 2.7901 0.2702 -5.1183 21 1 3.3003 -0.6478 -6.1680 22 1 1.4673 0.8059 -5.5287 23 1 3.7446 1.3933 -4.9371 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6054 -0.2619 2.1369 28 1 1.7516 -1.7715 1.2055 29 1 3.9994 -1.0728 0.4260 30 1 3.8531 0.4370 1.3574 31 1 3.4259 -1.7366 3.1101 32 1 6.4969 -0.1131 4.9704 33 1 6.3004 -1.5161 6.1512 34 1 7.8064 -4.1664 4.2495 35 1 9.0705 -3.1666 5.0044 36 1 7.5432 -3.4713 5.8669 37 1 2.2491 -1.6318 -1.1526 38 1 2.8336 -2.4224 -2.6142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503414352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:27 Heat of formation + Delta-G solvation = -19.985870 kcal Electronic energy + Delta-G solvation = -16956.566724 eV Core-core repulsion = 14220.478813 eV Total energy + Delta-G solvation = -2736.087911 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.90771 -37.26502 -36.38956 -34.42255 -32.45170 -29.56369 -28.68775 -27.94933 -24.62386 -23.42777 -22.20678 -20.98050 -20.37802 -19.59503 -17.51120 -17.27121 -15.82560 -15.37998 -14.71946 -14.64197 -14.43943 -13.96529 -13.55508 -13.41668 -13.04767 -12.84086 -12.60576 -12.21827 -12.20037 -11.61268 -11.53412 -11.07578 -10.90989 -10.67268 -10.54946 -10.51487 -10.24508 -10.20497 -9.92621 -9.65162 -9.11569 -8.91712 -8.81786 -7.00069 -6.05237 -3.05171 2.58435 3.24328 3.55343 3.59557 3.68893 3.76515 4.53829 4.58833 4.66027 4.71705 5.04469 5.11549 5.23376 5.30498 5.43211 5.48040 5.53242 5.56168 5.68486 5.75737 5.76569 5.84044 6.00462 6.10402 6.13349 6.28152 6.32341 6.41671 6.57893 6.66548 6.80679 6.99814 7.64796 7.85483 8.38220 8.80213 9.26809 10.13238 10.27782 11.43060 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.004646 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.367013 B = 6024.597505 C = 6707.504624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.123 3.877 6 N -0.726 5.726 7 C 0.536 3.464 8 O -0.538 6.538 9 C -0.190 4.190 10 H 0.121 0.879 11 C -0.151 4.151 12 C -0.124 4.124 13 H 0.118 0.882 14 C -0.123 4.123 15 N -0.735 5.735 16 C -0.330 4.330 17 H 0.064 0.936 18 C -0.045 4.045 19 N -0.944 5.944 20 Si 1.079 2.921 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.295 1.295 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.366 0.634 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 -0.803 19.125 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.376 5.376 7 C 0.322 3.678 8 O -0.415 6.415 9 C -0.211 4.211 10 H 0.139 0.861 11 C -0.188 4.188 12 C -0.142 4.142 13 H 0.136 0.864 14 C -0.180 4.180 15 N -0.378 5.378 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.242 4.242 19 N -0.589 5.589 20 Si 0.910 3.090 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.223 1.223 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.199 0.801 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.841 -0.299 16.914 17.347 hybrid contribution -0.975 -0.352 1.886 2.152 sum 2.866 -0.650 18.800 19.028 Atomic orbital electron populations 1.22406 0.99040 1.00749 1.00088 1.20089 0.91875 0.95564 0.85559 0.93189 1.22077 0.93975 1.01675 0.99467 1.21427 0.94305 0.97206 0.87081 1.46043 1.07120 1.57038 1.27422 1.19647 0.82376 0.79962 0.85836 1.90727 1.55446 1.45939 1.49385 1.22324 0.98818 1.02825 0.97147 0.86063 1.23100 1.02521 0.98313 0.94870 1.22390 0.90754 0.99303 1.01770 0.86444 1.21398 1.00828 0.95822 0.99966 1.42461 1.79257 1.09765 1.06347 1.20022 1.41867 0.95078 0.89137 0.91801 1.25736 0.99374 0.97494 1.01603 1.70888 1.51320 1.08355 1.28360 0.83260 0.75808 0.74338 0.75627 1.21079 1.22353 1.22260 0.92642 0.93663 0.94435 0.91750 0.91753 0.90150 0.91819 0.76996 0.88337 0.87919 0.91884 0.91702 0.92448 0.80063 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.18 3.53 2.89 -67.93 -0.20 3.33 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 C -0.13 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.12 2.11 5.56 -4.04 -0.02 2.08 16 6 N -0.73 -10.13 5.56 -60.29 -0.33 -10.46 16 7 C 0.54 8.27 7.61 -10.98 -0.08 8.19 16 8 O -0.54 -10.89 16.26 5.55 0.09 -10.80 16 9 C -0.19 -2.09 5.91 -91.77 -0.54 -2.63 16 10 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 11 C -0.15 -1.39 9.88 -26.69 -0.26 -1.65 16 12 C -0.12 -1.30 5.92 -90.58 -0.54 -1.83 16 13 H 0.12 1.48 7.67 -51.93 -0.40 1.08 16 14 C -0.12 -0.97 10.19 37.16 0.38 -0.60 16 15 N -0.73 -18.33 4.57 -53.43 -0.24 -18.58 16 16 C -0.33 -9.38 9.93 -15.06 -0.15 -9.52 16 17 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.04 -1.32 5.50 -17.43 -0.10 -1.41 16 19 N -0.94 -29.73 13.70 55.49 0.76 -28.97 16 20 Si 1.08 26.56 29.92 -169.99 -5.09 21.47 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.72 7.75 -51.93 -0.40 1.31 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.40 4.13 8.47 -40.82 -0.35 3.79 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 37 H 0.37 9.47 6.63 -40.82 -0.27 9.20 16 38 H 0.25 7.88 6.77 -40.82 -0.28 7.61 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -34.12 319.65 -7.66 -41.78 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.38 Total: 9.54 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.29 Total: -8.81 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.18 Total: -58.01 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -5.09 Total: 21.47 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.12 -7.66 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503414352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.792 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds