Wall clock time and date at job start Sun Mar 29 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 C 1.52995 * 109.47023 * 120.00103 * 2 1 3 5 5 C 1.53001 * 109.47285 * 185.00026 * 4 2 1 6 6 N 1.46498 * 109.47542 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00256 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99943 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99795 * 179.97438 * 7 6 5 10 10 H 1.08994 * 115.55301 * 34.41976 * 9 7 6 11 11 C 1.53001 * 117.49477 * 248.74225 * 9 7 6 12 12 C 1.53001 * 117.49306 * 180.08196 * 9 7 6 13 13 H 1.09004 * 117.50106 * 0.02562 * 12 9 7 14 14 C 1.52998 * 117.50056 * 214.97359 * 12 9 7 15 15 N 1.46504 * 109.47097 * 240.00057 * 2 1 3 16 16 C 1.36934 * 119.99567 * 85.00242 * 15 2 1 17 17 H 1.08001 * 120.00537 * 359.97438 * 16 15 2 18 18 C 1.38811 * 119.99798 * 179.97438 * 16 15 2 19 19 N 1.31624 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 299.99987 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00079 * 20 18 16 24 24 H 1.08995 * 109.47001 * 60.00028 * 1 2 3 25 25 H 1.09007 * 109.46641 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47561 * 299.99379 * 1 2 3 27 27 H 1.08996 * 109.47626 * 305.00309 * 4 2 1 28 28 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 29 29 H 1.09000 * 109.47026 * 300.00158 * 5 4 2 30 30 H 1.09000 * 109.46786 * 59.99897 * 5 4 2 31 31 H 0.97002 * 119.99616 * 0.02562 * 6 5 4 32 32 H 1.08995 * 117.50310 * 359.97438 * 11 9 7 33 33 H 1.09001 * 117.49519 * 145.00308 * 11 9 7 34 34 H 1.09008 * 109.46516 * 60.00652 * 14 12 9 35 35 H 1.08994 * 109.47658 * 179.97438 * 14 12 9 36 36 H 1.09001 * 109.47226 * 300.01188 * 14 12 9 37 37 H 0.97000 * 119.99825 * 264.99423 * 15 2 1 38 38 H 0.97005 * 119.99717 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0532 -1.3045 2.5095 7 6 5.3741 -1.3399 2.7752 8 8 6.1584 -0.8000 2.0240 9 6 5.8763 -2.0504 4.0056 10 1 5.3170 -2.9396 4.2963 11 6 6.4695 -1.1917 5.1244 12 6 7.3863 -2.0536 4.2525 13 1 8.0163 -1.5414 3.5252 14 6 7.9954 -3.3043 4.8893 15 7 2.0183 -0.6906 -1.1962 16 6 2.1491 -0.0074 -2.3757 17 1 1.8919 1.0404 -2.4243 18 6 2.6123 -0.6616 -3.5090 19 7 2.9263 -1.9384 -3.4497 20 14 2.7901 0.2702 -5.1183 21 1 3.3003 -0.6478 -6.1680 22 1 1.4673 0.8059 -5.5287 23 1 3.7446 1.3933 -4.9371 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6054 -0.2619 2.1369 28 1 1.7516 -1.7715 1.2055 29 1 3.9994 -1.0728 0.4260 30 1 3.8531 0.4370 1.3574 31 1 3.4259 -1.7366 3.1101 32 1 6.4969 -0.1131 4.9704 33 1 6.3004 -1.5161 6.1512 34 1 7.8064 -4.1664 4.2495 35 1 9.0705 -3.1666 5.0044 36 1 7.5432 -3.4713 5.8669 37 1 2.2491 -1.6318 -1.1526 38 1 2.8336 -2.4224 -2.6142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503414352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:27 Heat of formation + Delta-G solvation = -44.004106 kcal Electronic energy + Delta-G solvation = -16957.608232 eV Core-core repulsion = 14220.478813 eV Total energy + Delta-G solvation = -2737.129419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09259 -38.56246 -37.68631 -35.99266 -34.34102 -31.05674 -29.95171 -29.24248 -25.99775 -25.30614 -23.48175 -22.03178 -21.63888 -20.84894 -19.51757 -18.47221 -17.15380 -16.78697 -16.51963 -16.06338 -15.67697 -15.47571 -15.06791 -14.39467 -14.30923 -14.17722 -13.77499 -13.71044 -13.21225 -12.93994 -12.68913 -12.49638 -12.39913 -12.33358 -12.27042 -11.90046 -11.77759 -11.37910 -11.23783 -11.09320 -10.97005 -10.81489 -10.18994 -9.10913 -8.38262 -5.30887 1.42651 1.55741 1.66268 1.82033 2.09090 2.71051 2.81915 3.41232 3.65702 3.71997 3.74420 3.85422 3.88929 4.06934 4.20999 4.23387 4.39942 4.53914 4.64759 4.70988 4.78355 4.84692 4.90653 4.92610 4.99176 5.04024 5.09320 5.20179 5.28544 5.36388 5.41464 5.49713 5.62001 6.50255 6.51984 7.11553 7.21695 8.02283 8.12563 9.13838 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.004646 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.367013 B = 6024.597505 C = 6707.504624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.133 3.867 6 N -0.709 5.709 7 C 0.527 3.473 8 O -0.598 6.598 9 C -0.194 4.194 10 H 0.154 0.846 11 C -0.128 4.128 12 C -0.137 4.137 13 H 0.084 0.916 14 C -0.117 4.117 15 N -0.748 5.748 16 C -0.326 4.326 17 H 0.065 0.935 18 C -0.107 4.107 19 N -0.977 5.977 20 Si 1.124 2.876 21 H -0.294 1.294 22 H -0.275 1.275 23 H -0.282 1.282 24 H 0.031 0.969 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.419 0.581 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.358 0.642 38 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -0.757 21.783 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.060 3.940 3 H 0.057 0.943 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.361 5.361 7 C 0.315 3.685 8 O -0.479 6.479 9 C -0.214 4.214 10 H 0.172 0.828 11 C -0.166 4.166 12 C -0.156 4.156 13 H 0.103 0.897 14 C -0.174 4.174 15 N -0.391 5.391 16 C -0.458 4.458 17 H 0.083 0.917 18 C -0.298 4.298 19 N -0.626 5.626 20 Si 0.950 3.050 21 H -0.220 1.220 22 H -0.201 1.201 23 H -0.209 1.209 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.256 0.744 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.190 0.810 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.634 -0.241 19.655 19.832 hybrid contribution -0.617 -0.302 1.143 1.334 sum 2.017 -0.543 20.798 20.903 Atomic orbital electron populations 1.22239 0.96873 1.01087 1.00960 1.20404 0.93278 0.94988 0.85358 0.94326 1.21922 0.92307 1.02122 0.98983 1.21066 0.95446 0.95998 0.86613 1.45841 1.07384 1.56350 1.26504 1.20555 0.82152 0.79181 0.86619 1.90701 1.56904 1.48583 1.51698 1.22360 0.99355 1.03997 0.95717 0.82827 1.23225 1.00055 0.97401 0.95881 1.22441 0.90212 1.00883 1.02018 0.89739 1.21388 1.01198 0.94074 1.00719 1.42669 1.79677 1.09524 1.07194 1.20366 1.39780 0.95227 0.90391 0.91747 1.27114 0.99857 0.97646 1.05194 1.70997 1.54104 1.09593 1.27904 0.82668 0.76913 0.73474 0.71984 1.21984 1.20087 1.20867 0.95012 0.93559 0.90294 0.87359 0.90831 0.95182 0.93414 0.74401 0.89592 0.84225 0.92204 0.91180 0.90096 0.81012 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.49 71.98 0.68 -4.41 16 2 C 0.17 6.47 2.89 44.99 0.13 6.60 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 C -0.12 -3.36 4.87 30.59 0.15 -3.21 16 5 C 0.13 4.61 5.56 86.38 0.48 5.09 16 6 N -0.71 -19.10 5.56 -463.05 -2.57 -21.67 16 7 C 0.53 16.27 7.61 87.66 0.67 16.93 16 8 O -0.60 -25.46 16.26 -3.04 -0.05 -25.51 16 9 C -0.19 -3.89 5.91 -11.54 -0.07 -3.96 16 10 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 11 C -0.13 -2.04 9.88 30.62 0.30 -1.74 16 12 C -0.14 -2.74 5.92 -10.77 -0.06 -2.80 16 13 H 0.08 2.25 7.67 -2.39 -0.02 2.23 16 14 C -0.12 -1.58 10.19 71.98 0.73 -0.85 16 15 N -0.75 -37.99 4.57 -322.94 -1.48 -39.46 16 16 C -0.33 -18.82 9.93 84.03 0.83 -17.98 16 17 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 18 C -0.11 -6.44 5.50 84.86 0.47 -5.98 16 19 N -0.98 -63.37 13.70 21.65 0.30 -63.08 16 20 Si 1.12 54.14 29.92 68.60 2.05 56.19 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.03 1.35 7.75 -2.39 -0.02 1.33 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.42 7.53 8.47 -92.71 -0.79 6.74 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.14 1.23 8.05 -2.39 -0.02 1.21 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.73 7.90 -2.39 -0.02 0.71 16 37 H 0.36 19.13 6.63 -92.71 -0.61 18.51 16 38 H 0.24 15.66 6.77 -92.70 -0.63 15.03 16 Total: -1.00 -78.46 319.65 2.35 -76.11 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.22 Total: 29.70 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.31 Total: -12.29 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -3.75 Total: -124.20 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 54.14 SS G_CDS: 2.05 Total: 56.19 kcal Total: -78.46 2.35 -76.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503414352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.109 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds