Wall clock time and date at job start Sun Mar 29 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46496 * 120.00271 * 180.02562 * 5 3 2 7 7 H 1.09004 * 110.43130 * 325.69462 * 6 5 3 8 8 C 1.54894 * 110.48669 * 88.23746 * 6 5 3 9 9 C 1.55029 * 102.67800 * 156.51846 * 8 6 5 10 10 C 1.54261 * 104.28570 * 322.23305 * 9 8 6 11 11 H 1.09003 * 110.03140 * 264.23556 * 10 9 8 12 12 C 1.52992 * 110.03559 * 142.80482 * 10 9 8 13 13 N 1.46501 * 109.47296 * 67.83049 * 12 10 9 14 14 C 1.36939 * 120.00077 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00277 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00039 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99863 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47117 * 90.00059 * 18 16 14 20 20 H 1.48504 * 109.46611 * 209.99927 * 18 16 14 21 21 H 1.48500 * 109.47169 * 329.99690 * 18 16 14 22 22 C 1.53870 * 106.59697 * 23.52051 * 10 9 8 23 23 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 28 28 H 0.97005 * 119.99463 * 359.97438 * 5 3 2 29 29 H 1.08996 * 110.75218 * 274.93626 * 8 6 5 30 30 H 1.08995 * 110.75222 * 38.30878 * 8 6 5 31 31 H 1.09006 * 110.52350 * 203.48713 * 9 8 6 32 32 H 1.09002 * 110.48395 * 80.95834 * 9 8 6 33 33 H 1.08995 * 109.47593 * 187.83532 * 12 10 9 34 34 H 1.09002 * 109.47418 * 307.83892 * 12 10 9 35 35 H 0.96998 * 119.99812 * 0.02562 * 13 12 10 36 36 H 0.96991 * 120.00361 * 180.02562 * 17 16 14 37 37 H 1.09011 * 110.03461 * 240.71856 * 22 10 9 38 38 H 1.08995 * 110.03512 * 119.28718 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1767 3.6887 -0.5749 8 6 3.9850 3.5735 1.4506 9 6 5.0305 4.7086 1.3025 10 6 6.0314 4.1705 0.2592 11 1 6.8838 3.7127 0.7611 12 6 6.5052 5.3078 -0.6477 13 7 7.3215 6.2442 0.1290 14 6 7.8594 7.3486 -0.4761 15 1 7.6816 7.5296 -1.5258 16 6 8.6332 8.2355 0.2598 17 7 9.1498 9.2972 -0.3216 18 14 8.9414 7.9219 2.0754 19 1 10.1708 7.1043 2.2349 20 1 9.1142 9.2182 2.7791 21 1 7.7841 7.1942 2.6554 22 6 5.2780 3.1150 -0.5689 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9877 0.9299 -0.0005 29 1 3.0345 3.9656 1.8123 30 1 4.3575 2.7903 2.1107 31 1 5.5320 4.8926 2.2528 32 1 4.5552 5.6202 0.9404 33 1 7.1000 4.8980 -1.4640 34 1 5.6407 5.8316 -1.0556 35 1 7.4815 6.0814 1.0717 36 1 9.6908 9.9167 0.1925 37 1 5.7649 2.1447 -0.4690 38 1 5.2500 3.4129 -1.6170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507391526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:30 Heat of formation + Delta-G solvation = -48.139590 kcal Electronic energy + Delta-G solvation = -17116.938268 eV Core-core repulsion = 14379.629521 eV Total energy + Delta-G solvation = -2737.308747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07909 -38.19100 -34.98258 -33.51529 -32.88438 -31.23985 -29.04963 -28.01255 -24.96416 -23.95351 -21.85282 -20.67675 -20.47407 -19.62878 -17.49533 -17.34222 -16.43923 -15.79305 -14.88763 -14.73100 -14.32478 -13.94981 -13.64758 -13.33273 -13.15765 -12.85687 -12.57585 -12.28931 -12.02424 -11.86884 -11.65047 -11.43816 -11.22645 -10.93710 -10.75026 -10.68719 -10.36504 -10.28682 -10.02169 -9.91436 -9.56513 -9.10792 -8.86570 -7.19856 -5.74578 -3.09545 2.51035 3.05355 3.38668 3.41265 3.46459 4.46866 4.61124 4.63708 4.69470 4.80282 4.81458 4.97596 5.24622 5.37563 5.47673 5.49137 5.52242 5.54518 5.60748 5.64725 5.76402 5.83543 5.94526 5.94992 6.01816 6.14301 6.18777 6.36774 6.48224 6.54368 6.71783 6.84088 7.37031 8.02463 8.11151 8.44831 9.24396 9.96805 10.17162 11.44110 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060688 B = 0.004079 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.265727 B = 6862.840176 C = 7003.968423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.508 3.492 4 O -0.541 6.541 5 N -0.725 5.725 6 C 0.138 3.862 7 H 0.094 0.906 8 C -0.133 4.133 9 C -0.115 4.115 10 C -0.100 4.100 11 H 0.073 0.927 12 C 0.163 3.837 13 N -0.756 5.756 14 C -0.243 4.243 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.936 5.936 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.120 4.120 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.398 0.602 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.028 0.972 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.832 -21.314 2.299 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.294 3.706 4 O -0.417 6.417 5 N -0.376 5.376 6 C 0.033 3.967 7 H 0.112 0.888 8 C -0.171 4.171 9 C -0.153 4.153 10 C -0.119 4.119 11 H 0.092 0.908 12 C 0.036 3.964 13 N -0.401 5.401 14 C -0.373 4.373 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.158 4.158 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.233 0.767 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.351 -20.468 2.104 24.528 hybrid contribution 0.767 -0.445 1.319 1.589 sum -12.584 -20.913 3.423 24.646 Atomic orbital electron populations 1.21524 0.93084 1.01450 1.03433 1.21643 0.98697 0.93984 1.04187 1.20806 0.82314 0.91786 0.75660 1.90712 1.55298 1.46589 1.49144 1.46190 1.07051 1.08899 1.75472 1.21939 0.95523 0.82159 0.97045 0.88760 1.22898 0.99628 0.98471 0.96125 1.22389 0.95810 0.97958 0.99138 1.21932 0.97712 0.95861 0.96410 0.90849 1.20777 0.93744 0.88925 0.92955 1.42710 1.61584 1.27083 1.08751 1.19081 1.24047 0.98194 0.95943 0.89269 1.24678 1.00053 0.96987 0.97578 1.69698 1.38922 1.14247 1.35523 0.86538 0.78021 0.77113 0.86831 1.21144 1.21746 1.20274 1.22381 0.93554 0.99373 1.00536 0.91956 0.92196 0.91995 0.89065 0.89024 0.76740 0.91399 0.91639 0.91643 0.90629 0.95647 0.95412 0.80683 0.93091 0.91479 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.20 37.16 0.34 -0.70 16 2 C -0.15 -0.99 6.42 -27.88 -0.18 -1.17 16 3 C 0.51 5.51 7.83 -10.98 -0.09 5.43 16 4 O -0.54 -8.31 15.66 5.56 0.09 -8.22 16 5 N -0.72 -6.85 5.17 -52.20 -0.27 -7.12 16 6 C 0.14 1.63 3.18 -66.27 -0.21 1.42 16 7 H 0.09 1.32 7.61 -51.93 -0.40 0.92 16 8 C -0.13 -1.65 6.59 -24.66 -0.16 -1.82 16 9 C -0.11 -1.68 6.08 -25.00 -0.15 -1.84 16 10 C -0.10 -1.47 2.96 -89.51 -0.27 -1.74 16 11 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 12 C 0.16 3.13 5.31 -4.05 -0.02 3.11 16 13 N -0.76 -18.13 5.25 -59.91 -0.31 -18.45 16 14 C -0.24 -6.99 10.48 -15.06 -0.16 -7.15 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 17 N -0.94 -29.82 13.97 55.49 0.78 -29.05 16 18 Si 0.88 22.34 27.74 -169.99 -4.71 17.63 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 21 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 22 C -0.12 -1.38 6.19 -25.62 -0.16 -1.54 16 23 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.40 2.55 8.35 -40.82 -0.34 2.21 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 35 H 0.36 8.41 5.41 -40.82 -0.22 8.19 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.07 0.63 7.72 -51.92 -0.40 0.23 16 38 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -34.03 308.49 -7.32 -41.35 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.39 Total: 5.21 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.15 Total: -6.01 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.19 Total: -54.61 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.03 -7.32 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507391526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.786 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds