Wall clock time and date at job start Sun Mar 29 2020 22:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46496 * 120.00271 * 180.02562 * 5 3 2 7 7 H 1.09004 * 110.43130 * 325.69462 * 6 5 3 8 8 C 1.54894 * 110.48669 * 88.23746 * 6 5 3 9 9 C 1.55029 * 102.67800 * 156.51846 * 8 6 5 10 10 C 1.54261 * 104.28570 * 322.23305 * 9 8 6 11 11 H 1.09003 * 110.03140 * 264.23556 * 10 9 8 12 12 C 1.52992 * 110.03559 * 142.80482 * 10 9 8 13 13 N 1.46501 * 109.47296 * 67.83049 * 12 10 9 14 14 C 1.36939 * 120.00077 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00277 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00039 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99863 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47117 * 90.00059 * 18 16 14 20 20 H 1.48504 * 109.46611 * 209.99927 * 18 16 14 21 21 H 1.48500 * 109.47169 * 329.99690 * 18 16 14 22 22 C 1.53870 * 106.59697 * 23.52051 * 10 9 8 23 23 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 28 28 H 0.97005 * 119.99463 * 359.97438 * 5 3 2 29 29 H 1.08996 * 110.75218 * 274.93626 * 8 6 5 30 30 H 1.08995 * 110.75222 * 38.30878 * 8 6 5 31 31 H 1.09006 * 110.52350 * 203.48713 * 9 8 6 32 32 H 1.09002 * 110.48395 * 80.95834 * 9 8 6 33 33 H 1.08995 * 109.47593 * 187.83532 * 12 10 9 34 34 H 1.09002 * 109.47418 * 307.83892 * 12 10 9 35 35 H 0.96998 * 119.99812 * 0.02562 * 13 12 10 36 36 H 0.96991 * 120.00361 * 180.02562 * 17 16 14 37 37 H 1.09011 * 110.03461 * 240.71856 * 22 10 9 38 38 H 1.08995 * 110.03512 * 119.28718 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1767 3.6887 -0.5749 8 6 3.9850 3.5735 1.4506 9 6 5.0305 4.7086 1.3025 10 6 6.0314 4.1705 0.2592 11 1 6.8838 3.7127 0.7611 12 6 6.5052 5.3078 -0.6477 13 7 7.3215 6.2442 0.1290 14 6 7.8594 7.3486 -0.4761 15 1 7.6816 7.5296 -1.5258 16 6 8.6332 8.2355 0.2598 17 7 9.1498 9.2972 -0.3216 18 14 8.9414 7.9219 2.0754 19 1 10.1708 7.1043 2.2349 20 1 9.1142 9.2182 2.7791 21 1 7.7841 7.1942 2.6554 22 6 5.2780 3.1150 -0.5689 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9877 0.9299 -0.0005 29 1 3.0345 3.9656 1.8123 30 1 4.3575 2.7903 2.1107 31 1 5.5320 4.8926 2.2528 32 1 4.5552 5.6202 0.9404 33 1 7.1000 4.8980 -1.4640 34 1 5.6407 5.8316 -1.0556 35 1 7.4815 6.0814 1.0717 36 1 9.6908 9.9167 0.1925 37 1 5.7649 2.1447 -0.4690 38 1 5.2500 3.4129 -1.6170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507391526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:29 Heat of formation + Delta-G solvation = -72.608168 kcal Electronic energy + Delta-G solvation = -17117.999305 eV Core-core repulsion = 14379.629521 eV Total energy + Delta-G solvation = -2738.369785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98769 -39.31063 -36.59796 -34.79896 -33.69499 -33.10409 -30.38313 -29.14686 -26.38268 -24.91800 -23.70857 -21.65666 -21.34907 -20.90792 -19.52337 -18.14841 -17.39633 -16.63327 -16.52053 -16.21968 -15.67579 -15.04345 -14.92015 -14.71025 -14.47869 -14.08634 -13.94212 -13.51741 -13.21899 -12.87625 -12.78132 -12.62054 -12.37636 -12.16508 -12.00985 -11.99728 -11.83768 -11.76454 -11.64663 -11.37205 -10.96288 -10.81976 -10.00278 -9.29807 -8.03871 -5.37254 1.36777 1.41142 1.48610 1.70352 2.27675 2.47972 3.27235 3.51169 3.56155 3.82709 3.89776 3.92050 4.25947 4.30758 4.39055 4.47046 4.49710 4.60685 4.63963 4.71069 4.78588 4.90865 5.00943 5.03624 5.06629 5.09139 5.12235 5.24357 5.34898 5.36669 5.50524 5.63062 5.74727 6.20544 6.64813 7.07493 7.35756 7.83966 8.04106 9.18028 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060688 B = 0.004079 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.265727 B = 6862.840176 C = 7003.968423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.500 3.500 4 O -0.595 6.595 5 N -0.710 5.710 6 C 0.142 3.858 7 H 0.066 0.934 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.091 4.091 11 H 0.086 0.914 12 C 0.158 3.842 13 N -0.757 5.757 14 C -0.237 4.237 15 H 0.053 0.947 16 C -0.067 4.067 17 N -0.986 5.986 18 Si 0.958 3.042 19 H -0.274 1.274 20 H -0.296 1.296 21 H -0.250 1.250 22 C -0.108 4.108 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.418 0.582 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.026 0.974 34 H 0.016 0.984 35 H 0.367 0.633 36 H 0.258 0.742 37 H 0.102 0.898 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -24.801 3.879 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.289 3.711 4 O -0.475 6.475 5 N -0.363 5.363 6 C 0.036 3.964 7 H 0.084 0.916 8 C -0.160 4.160 9 C -0.155 4.155 10 C -0.110 4.110 11 H 0.104 0.896 12 C 0.032 3.968 13 N -0.403 5.403 14 C -0.368 4.368 15 H 0.071 0.929 16 C -0.258 4.258 17 N -0.637 5.637 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.223 1.223 21 H -0.175 1.175 22 C -0.147 4.147 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.256 0.744 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.261 -24.038 3.676 27.698 hybrid contribution 0.689 0.654 0.707 1.184 sum -12.572 -23.384 4.383 26.909 Atomic orbital electron populations 1.21544 0.94005 1.02521 1.01634 1.21695 0.97796 0.91271 1.06780 1.21629 0.82131 0.93032 0.74295 1.90699 1.56655 1.48565 1.51623 1.46025 1.07215 1.08418 1.74603 1.21674 0.95227 0.83246 0.96248 0.91615 1.22796 0.98244 0.98110 0.96851 1.22350 0.96328 0.97838 0.98966 1.21846 0.98373 0.94839 0.95921 0.89582 1.20973 0.92561 0.89525 0.93701 1.42705 1.61779 1.26501 1.09283 1.19066 1.23528 0.99574 0.94677 0.92900 1.25572 1.00330 0.96817 1.03096 1.69892 1.40342 1.15712 1.37722 0.85358 0.78974 0.77044 0.80137 1.20020 1.22290 1.17458 1.22287 0.92891 0.99916 0.99583 0.93848 0.89578 0.93825 0.86248 0.86286 0.74412 0.92807 0.89471 0.91599 0.93154 0.95559 0.96624 0.79971 0.93297 0.87985 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 71.98 0.66 -1.21 16 2 C -0.14 -1.40 6.42 29.85 0.19 -1.21 16 3 C 0.50 9.92 7.83 87.66 0.69 10.61 16 4 O -0.59 -18.32 15.66 -3.02 -0.05 -18.37 16 5 N -0.71 -11.32 5.17 -437.45 -2.26 -13.58 16 6 C 0.14 3.10 3.18 46.07 0.15 3.24 16 7 H 0.07 1.85 7.61 -2.38 -0.02 1.83 16 8 C -0.12 -2.80 6.59 31.94 0.21 -2.59 16 9 C -0.12 -3.25 6.08 31.72 0.19 -3.06 16 10 C -0.09 -2.46 2.96 -10.08 -0.03 -2.49 16 11 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 12 C 0.16 6.01 5.31 86.38 0.46 6.46 16 13 N -0.76 -35.86 5.25 -343.46 -1.80 -37.67 16 14 C -0.24 -13.92 10.48 84.03 0.88 -13.04 16 15 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 16 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 17 N -0.99 -64.47 13.97 21.65 0.30 -64.16 16 18 Si 0.96 45.87 27.74 68.60 1.90 47.77 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 22 C -0.11 -2.19 6.19 31.32 0.19 -1.99 16 23 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 26 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.42 3.44 8.35 -92.70 -0.77 2.67 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 1.65 7.76 -2.39 -0.02 1.63 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.02 0.64 8.00 -2.39 -0.02 0.62 16 35 H 0.37 16.37 5.41 -92.71 -0.50 15.87 16 36 H 0.26 16.01 8.31 -92.72 -0.77 15.24 16 37 H 0.10 1.41 7.72 -2.38 -0.02 1.39 16 38 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -76.92 308.49 1.86 -75.06 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.29 Total: 19.80 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 4.06 Total: -8.85 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.76 Total: -115.41 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Total: -76.92 1.86 -75.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507391526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.453 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds