Wall clock time and date at job start Sun Mar 29 2020 22:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47200 * 2 1 4 4 O 1.21280 * 120.00105 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99683 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99783 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.67424 * 36.78122 * 6 5 3 8 8 C 1.54891 * 110.75585 * 273.54558 * 6 5 3 9 9 C 1.54263 * 104.19869 * 203.55851 * 8 6 5 10 10 C 1.53873 * 106.59601 * 23.60807 * 9 8 6 11 11 H 1.09004 * 110.03752 * 240.66561 * 10 9 8 12 12 C 1.53005 * 110.03537 * 119.28547 * 10 9 8 13 13 N 1.46505 * 109.46904 * 67.09058 * 12 10 9 14 14 C 1.36931 * 119.99788 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 12 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00121 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00072 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99871 * 18 16 14 22 22 C 1.54269 * 106.64467 * 359.97438 * 10 9 8 23 23 H 1.09000 * 109.47501 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47606 * 300.00447 * 1 2 3 25 25 H 1.09002 * 109.46873 * 60.00376 * 1 2 3 26 26 H 1.09002 * 109.46932 * 239.99344 * 2 1 3 27 27 H 1.09005 * 109.46391 * 119.99775 * 2 1 3 28 28 H 0.96999 * 120.00022 * 359.97438 * 5 3 2 29 29 H 1.09004 * 110.48971 * 84.87989 * 8 6 5 30 30 H 1.09004 * 110.59447 * 322.29464 * 8 6 5 31 31 H 1.08997 * 110.03354 * 264.32662 * 9 8 6 32 32 H 1.08998 * 110.03470 * 142.88871 * 9 8 6 33 33 H 1.09003 * 109.46946 * 307.09817 * 12 10 9 34 34 H 1.08993 * 109.47679 * 187.09360 * 12 10 9 35 35 H 0.97000 * 119.99792 * 0.02562 * 13 12 10 36 36 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.48443 * 95.08771 * 22 10 9 38 38 H 1.09000 * 110.48808 * 217.73994 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.2038 3.6831 0.6117 8 6 3.9449 3.5960 -1.4443 9 6 4.9870 4.7293 -1.3489 10 6 5.8568 4.4240 -0.1168 11 1 5.7776 5.2355 0.6067 12 6 7.3160 4.2387 -0.5381 13 7 7.8505 5.5143 -1.0213 14 6 9.1467 5.5930 -1.4556 15 1 9.7749 4.7146 -1.4424 16 6 9.6514 6.8003 -1.9188 17 7 8.8856 7.8707 -1.9354 18 14 11.4173 6.9059 -2.5186 19 1 11.4643 6.6127 -3.9736 20 1 11.9431 8.2726 -2.2719 21 1 12.2485 5.9162 -1.7871 22 6 5.3132 3.1162 0.4947 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9877 0.9296 0.0013 29 1 2.9820 3.9896 -1.7700 30 1 4.2884 2.8182 -2.1264 31 1 4.4850 5.6886 -1.2230 32 1 5.6045 4.7455 -2.2470 33 1 7.3728 3.4962 -1.3341 34 1 7.9009 3.9002 0.3170 35 1 7.2861 6.3032 -1.0334 36 1 9.2385 8.7145 -2.2587 37 1 5.8788 2.2596 0.1279 38 1 5.3487 3.1603 1.5832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507391527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:31 Heat of formation + Delta-G solvation = -52.814042 kcal Electronic energy + Delta-G solvation = -17045.810087 eV Core-core repulsion = 14308.298640 eV Total energy + Delta-G solvation = -2737.511447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99850 -38.07403 -34.82266 -33.45521 -32.84377 -30.99550 -28.73792 -27.79818 -24.86021 -23.89104 -22.19685 -20.59980 -20.55475 -19.09078 -17.29570 -17.01319 -16.19922 -15.72141 -15.49080 -14.60443 -14.21172 -13.70053 -13.40286 -13.34971 -13.00273 -12.80000 -12.62883 -11.99046 -11.91768 -11.81524 -11.45914 -11.34835 -11.08427 -10.85623 -10.75793 -10.49676 -10.34804 -10.10574 -9.89021 -9.85882 -9.64341 -9.04318 -8.84700 -6.89088 -5.74306 -3.02658 2.55885 3.10798 3.44527 3.49381 3.51334 4.52404 4.60037 4.72664 4.81303 4.85740 4.90795 5.07377 5.29513 5.52547 5.54860 5.58179 5.64379 5.67417 5.68494 5.72559 5.87922 5.94233 5.98110 6.16105 6.20758 6.31447 6.36478 6.48331 6.60413 6.70693 6.85262 6.96751 7.43410 7.71412 8.16175 8.44886 9.55868 10.15096 10.49813 11.48665 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.072278 B = 0.003735 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.299426 B = 7495.078810 C = 7629.513116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.508 3.492 4 O -0.542 6.542 5 N -0.724 5.724 6 C 0.137 3.863 7 H 0.092 0.908 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.096 4.096 11 H 0.074 0.926 12 C 0.161 3.839 13 N -0.733 5.733 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.120 4.120 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.399 0.601 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.072 0.928 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 -16.186 4.534 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.295 3.705 4 O -0.419 6.419 5 N -0.375 5.375 6 C 0.033 3.967 7 H 0.110 0.890 8 C -0.170 4.170 9 C -0.153 4.153 10 C -0.115 4.115 11 H 0.092 0.908 12 C 0.033 3.967 13 N -0.377 5.377 14 C -0.370 4.370 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.158 4.158 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.233 0.767 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.507 -15.552 4.501 21.085 hybrid contribution 1.239 0.036 -0.397 1.301 sum -12.268 -15.516 4.105 20.202 Atomic orbital electron populations 1.21522 0.93120 1.01424 1.03393 1.21643 0.98654 0.94021 1.04224 1.20791 0.82294 0.91763 0.75664 1.90703 1.55317 1.46604 1.49306 1.46109 1.07021 1.09001 1.75323 1.22070 0.95217 0.82035 0.97385 0.89006 1.22719 0.99524 0.98653 0.96067 1.22128 0.96417 0.97515 0.99274 1.21874 0.96256 0.96306 0.97081 0.90751 1.20734 0.90145 0.89992 0.95800 1.42377 1.11853 1.06518 1.76921 1.19233 0.88530 0.94940 1.34321 0.91273 1.24744 0.98193 0.95817 1.02339 1.69662 1.35501 0.99990 1.53065 0.86193 0.84637 0.76795 0.78592 1.21760 1.21781 1.20801 1.22608 0.93694 0.99085 1.00428 0.92211 0.92018 0.91984 0.88998 0.89051 0.76662 0.91711 0.91686 0.91931 0.90328 0.96387 0.96583 0.78198 0.93532 0.90947 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.15 -1.06 6.42 -27.88 -0.18 -1.24 16 3 C 0.51 5.77 7.83 -10.99 -0.09 5.68 16 4 O -0.54 -8.51 15.71 5.56 0.09 -8.42 16 5 N -0.72 -7.35 5.21 -51.84 -0.27 -7.62 16 6 C 0.14 1.71 3.17 -65.90 -0.21 1.50 16 7 H 0.09 1.29 7.70 -51.93 -0.40 0.89 16 8 C -0.13 -1.80 6.51 -25.07 -0.16 -1.96 16 9 C -0.12 -1.84 6.16 -25.62 -0.16 -2.00 16 10 C -0.10 -1.54 2.97 -89.50 -0.27 -1.81 16 11 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 12 C 0.16 3.22 5.28 -4.04 -0.02 3.20 16 13 N -0.73 -18.70 5.36 -59.90 -0.32 -19.02 16 14 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.12 -1.48 5.98 -25.03 -0.15 -1.63 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.40 2.90 8.54 -40.82 -0.35 2.56 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.44 7.60 -51.93 -0.39 1.04 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.38 10.32 7.53 -40.82 -0.31 10.01 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.07 0.82 7.74 -51.93 -0.40 0.42 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.08 15.07 4.70 4.70 Total: -1.00 -32.95 312.08 -7.70 -40.65 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.47 Total: 6.43 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.14 Total: -6.45 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.13 Total: -54.46 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.95 -7.70 -40.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507391527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.164 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds