Wall clock time and date at job start Sun Mar 29 2020 22:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47200 * 2 1 4 4 O 1.21280 * 120.00105 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99683 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99783 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.67424 * 36.78122 * 6 5 3 8 8 C 1.54891 * 110.75585 * 273.54558 * 6 5 3 9 9 C 1.54263 * 104.19869 * 203.55851 * 8 6 5 10 10 C 1.53873 * 106.59601 * 23.60807 * 9 8 6 11 11 H 1.09004 * 110.03752 * 240.66561 * 10 9 8 12 12 C 1.53005 * 110.03537 * 119.28547 * 10 9 8 13 13 N 1.46505 * 109.46904 * 67.09058 * 12 10 9 14 14 C 1.36931 * 119.99788 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 12 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00121 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00072 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99871 * 18 16 14 22 22 C 1.54269 * 106.64467 * 359.97438 * 10 9 8 23 23 H 1.09000 * 109.47501 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47606 * 300.00447 * 1 2 3 25 25 H 1.09002 * 109.46873 * 60.00376 * 1 2 3 26 26 H 1.09002 * 109.46932 * 239.99344 * 2 1 3 27 27 H 1.09005 * 109.46391 * 119.99775 * 2 1 3 28 28 H 0.96999 * 120.00022 * 359.97438 * 5 3 2 29 29 H 1.09004 * 110.48971 * 84.87989 * 8 6 5 30 30 H 1.09004 * 110.59447 * 322.29464 * 8 6 5 31 31 H 1.08997 * 110.03354 * 264.32662 * 9 8 6 32 32 H 1.08998 * 110.03470 * 142.88871 * 9 8 6 33 33 H 1.09003 * 109.46946 * 307.09817 * 12 10 9 34 34 H 1.08993 * 109.47679 * 187.09360 * 12 10 9 35 35 H 0.97000 * 119.99792 * 0.02562 * 13 12 10 36 36 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.48443 * 95.08771 * 22 10 9 38 38 H 1.09000 * 110.48808 * 217.73994 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.2038 3.6831 0.6117 8 6 3.9449 3.5960 -1.4443 9 6 4.9870 4.7293 -1.3489 10 6 5.8568 4.4240 -0.1168 11 1 5.7776 5.2355 0.6067 12 6 7.3160 4.2387 -0.5381 13 7 7.8505 5.5143 -1.0213 14 6 9.1467 5.5930 -1.4556 15 1 9.7749 4.7146 -1.4424 16 6 9.6514 6.8003 -1.9188 17 7 8.8856 7.8707 -1.9354 18 14 11.4173 6.9059 -2.5186 19 1 11.4643 6.6127 -3.9736 20 1 11.9431 8.2726 -2.2719 21 1 12.2485 5.9162 -1.7871 22 6 5.3132 3.1162 0.4947 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9877 0.9296 0.0013 29 1 2.9820 3.9896 -1.7700 30 1 4.2884 2.8182 -2.1264 31 1 4.4850 5.6886 -1.2230 32 1 5.6045 4.7455 -2.2470 33 1 7.3728 3.4962 -1.3341 34 1 7.9009 3.9002 0.3170 35 1 7.2861 6.3032 -1.0334 36 1 9.2385 8.7145 -2.2587 37 1 5.8788 2.2596 0.1279 38 1 5.3487 3.1603 1.5832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507391527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:31 Heat of formation + Delta-G solvation = -75.607521 kcal Electronic energy + Delta-G solvation = -17046.798487 eV Core-core repulsion = 14308.298640 eV Total energy + Delta-G solvation = -2738.499846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96500 -39.27531 -36.44957 -34.79169 -33.64921 -32.78665 -30.12674 -29.07239 -26.36710 -24.96634 -23.95871 -21.65802 -21.45473 -20.42523 -19.09939 -18.08819 -17.30173 -16.78870 -16.58711 -16.36981 -15.48041 -15.15657 -14.91869 -14.61503 -14.33802 -14.04417 -13.57324 -13.30970 -13.08432 -12.82325 -12.79363 -12.61670 -12.44335 -12.16870 -12.10588 -11.99233 -11.85039 -11.71844 -11.52455 -11.29553 -10.91461 -10.82574 -10.00824 -8.98446 -7.94577 -5.23233 1.47169 1.49253 1.57700 1.70432 2.26438 2.56897 3.38950 3.56204 3.65693 3.82147 3.92688 4.20718 4.26725 4.30641 4.37288 4.46511 4.50380 4.59892 4.68100 4.78570 4.80454 4.91267 5.00076 5.02109 5.09656 5.14244 5.18675 5.25879 5.36817 5.39976 5.49062 5.52824 5.62999 6.27935 6.64817 7.33860 7.34978 8.11668 8.34068 9.29278 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.072278 B = 0.003735 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.299426 B = 7495.078810 C = 7629.513116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.502 3.498 4 O -0.593 6.593 5 N -0.711 5.711 6 C 0.145 3.855 7 H 0.075 0.925 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.090 4.090 11 H 0.064 0.936 12 C 0.160 3.840 13 N -0.747 5.747 14 C -0.245 4.245 15 H 0.077 0.923 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.975 3.025 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.268 1.268 22 C -0.104 4.104 23 H 0.085 0.915 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.417 0.583 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 -18.943 5.016 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.290 3.710 4 O -0.474 6.474 5 N -0.363 5.363 6 C 0.040 3.960 7 H 0.093 0.907 8 C -0.161 4.161 9 C -0.151 4.151 10 C -0.110 4.110 11 H 0.082 0.918 12 C 0.034 3.966 13 N -0.389 5.389 14 C -0.376 4.376 15 H 0.095 0.905 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.804 3.196 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.192 1.192 22 C -0.143 4.143 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.205 0.795 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.957 -18.393 4.999 23.047 hybrid contribution 1.032 0.856 -0.539 1.445 sum -11.925 -17.537 4.460 21.671 Atomic orbital electron populations 1.21542 0.93864 1.02542 1.01685 1.21699 0.97898 0.91279 1.06745 1.21609 0.82009 0.93056 0.74279 1.90690 1.56566 1.48501 1.51614 1.45963 1.07280 1.08462 1.74591 1.21776 0.95069 0.83272 0.95887 0.90693 1.22622 0.98078 0.97972 0.97396 1.22031 0.96638 0.98214 0.98184 1.21778 0.94001 0.98305 0.96882 0.91781 1.20909 0.92275 0.87684 0.95723 1.42623 1.11169 1.08085 1.77068 1.19670 0.89710 0.95101 1.33168 0.90518 1.25604 1.02427 0.95650 1.03406 1.69828 1.37370 1.00375 1.54674 0.85118 0.79868 0.76620 0.78033 1.21421 1.22272 1.19235 1.22495 0.93230 0.97371 1.01178 0.89583 0.93653 0.93877 0.86475 0.86186 0.74510 0.92748 0.90716 0.92884 0.92906 0.95910 0.95989 0.79523 0.94053 0.89007 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.20 71.98 0.66 -1.28 16 2 C -0.14 -1.55 6.42 29.85 0.19 -1.36 16 3 C 0.50 10.45 7.83 87.66 0.69 11.13 16 4 O -0.59 -18.50 15.71 -3.03 -0.05 -18.55 16 5 N -0.71 -12.55 5.21 -436.31 -2.27 -14.83 16 6 C 0.15 3.39 3.17 46.31 0.15 3.54 16 7 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 8 C -0.12 -3.28 6.51 31.67 0.21 -3.07 16 9 C -0.11 -3.65 6.16 31.32 0.19 -3.45 16 10 C -0.09 -2.84 2.97 -10.07 -0.03 -2.87 16 11 H 0.06 2.15 8.14 -2.38 -0.02 2.14 16 12 C 0.16 6.27 5.28 86.38 0.46 6.72 16 13 N -0.75 -38.43 5.36 -343.44 -1.84 -40.27 16 14 C -0.24 -13.80 9.99 84.04 0.84 -12.96 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 17 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 18 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C -0.10 -2.32 5.98 31.70 0.19 -2.13 16 23 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 25 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 26 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.42 4.42 8.54 -92.71 -0.79 3.63 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.98 7.60 -2.39 -0.02 1.96 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.37 20.58 7.53 -92.71 -0.70 19.89 16 36 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 37 H 0.09 1.73 7.74 -2.39 -0.02 1.72 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.39 312.08 1.71 -70.69 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.45 Total: 24.57 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.01 Total: -9.86 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -3.83 Total: -115.33 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.05 Total: -18.55 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.39 1.71 -70.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507391527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.922 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds