Wall clock time and date at job start Sun Mar 29 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.55298 * 2 1 4 4 C 1.53006 * 117.49724 * 214.28556 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.51316 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.50700 * 117.51845 * 252.51832 * 5 4 2 8 8 O 1.21288 * 119.99910 * 68.71707 * 7 5 4 9 9 N 1.34770 * 119.99999 * 248.71846 * 7 5 4 10 10 C 1.46496 * 120.00437 * 0.02562 * 9 7 5 11 11 C 1.46511 * 119.99717 * 179.97438 * 9 7 5 12 12 C 1.52998 * 109.46816 * 90.00231 * 11 9 7 13 13 C 1.52997 * 109.46849 * 180.02562 * 12 11 9 14 14 N 1.46504 * 109.47379 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00073 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00358 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99662 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00469 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47106 * 60.00083 * 19 17 15 21 21 H 1.48498 * 109.47508 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46888 * 300.00140 * 19 17 15 23 23 H 1.08998 * 109.47083 * 274.33348 * 1 2 3 24 24 H 1.08994 * 109.46707 * 34.33440 * 1 2 3 25 25 H 1.09006 * 109.47074 * 154.33246 * 1 2 3 26 26 H 1.09003 * 117.49619 * 145.02013 * 4 2 1 27 27 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.46812 * 89.99835 * 10 9 7 29 29 H 1.08997 * 109.47143 * 209.99860 * 10 9 7 30 30 H 1.09000 * 109.46919 * 330.00053 * 10 9 7 31 31 H 1.08998 * 109.46674 * 209.99669 * 11 9 7 32 32 H 1.09000 * 109.47195 * 330.00141 * 11 9 7 33 33 H 1.08998 * 109.47040 * 299.99214 * 12 11 9 34 34 H 1.08991 * 109.47836 * 60.00065 * 12 11 9 35 35 H 1.09005 * 109.47146 * 299.99828 * 13 12 11 36 36 H 1.08999 * 109.47674 * 59.99574 * 13 12 11 37 37 H 0.96998 * 119.99528 * 0.02562 * 14 13 12 38 38 H 0.97001 * 120.00564 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1214 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 1.6112 -1.8580 1.2690 7 6 3.5290 -0.7805 1.4616 8 8 3.9705 0.3476 1.4032 9 7 4.1943 -1.7298 2.1490 10 6 3.6613 -3.0926 2.2191 11 6 5.4512 -1.3991 2.8254 12 6 5.1553 -0.9348 4.2528 13 6 6.4678 -0.5889 4.9589 14 7 6.1845 -0.1436 6.3256 15 6 7.2123 0.2209 7.1538 16 1 8.2317 0.1807 6.7994 17 6 6.9438 0.6433 8.4485 18 7 5.7014 0.6929 8.8804 19 14 8.3457 1.1413 9.5782 20 1 9.0863 2.2789 8.9761 21 1 7.7980 1.5491 10.8969 22 1 9.2675 -0.0088 9.7598 23 1 -0.3633 0.0777 1.0247 24 1 -0.3632 0.8486 -0.5796 25 1 -0.3633 -0.9263 -0.4452 26 1 3.1716 -0.8757 -1.2680 27 1 1.6112 -1.8588 -1.2678 28 1 4.0522 -3.6788 1.3875 29 1 3.9619 -3.5523 3.1606 30 1 2.5733 -3.0606 2.1614 31 1 6.0905 -2.2814 2.8555 32 1 5.9575 -0.6017 2.2815 33 1 4.5159 -0.0525 4.2227 34 1 4.6489 -1.7321 4.7968 35 1 7.1076 -1.4708 4.9890 36 1 6.9738 0.2087 4.4149 37 1 5.2690 -0.1078 6.6440 38 1 5.5138 0.9876 9.7853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569230198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:18 Heat of formation + Delta-G solvation = -6.916698 kcal Electronic energy + Delta-G solvation = -16870.634270 eV Core-core repulsion = 14135.113081 eV Total energy + Delta-G solvation = -2735.521189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19518 -37.30286 -35.89169 -34.76369 -32.22024 -29.95893 -28.87169 -26.90754 -25.78830 -23.76576 -22.27670 -21.01514 -20.72194 -18.99005 -17.42178 -17.00084 -16.23241 -15.40606 -14.90281 -14.53177 -14.18903 -14.13781 -13.46786 -13.23642 -13.12814 -13.00401 -12.83776 -12.57995 -12.20485 -11.90525 -11.82246 -11.59116 -10.88631 -10.80383 -10.71961 -10.55785 -10.37619 -10.22253 -10.07414 -9.73517 -9.63806 -8.81677 -8.62334 -6.86748 -5.71099 -2.99818 2.47772 2.95759 3.47947 3.51585 3.53212 3.62572 4.32242 4.53968 4.56204 4.64276 4.81556 5.06384 5.08755 5.19944 5.26730 5.40826 5.44614 5.49659 5.51460 5.57558 5.61450 5.71843 5.74479 5.82625 5.97393 6.10291 6.13562 6.34904 6.43776 6.58625 6.91371 6.93946 7.38311 7.74088 8.21344 8.47850 9.58467 10.17404 10.52199 11.51978 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042273 B = 0.003818 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.199169 B = 7330.984321 C = 7580.297789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.191 4.191 6 H 0.124 0.876 7 C 0.540 3.460 8 O -0.536 6.536 9 N -0.612 5.612 10 C 0.079 3.921 11 C 0.119 3.881 12 C -0.139 4.139 13 C 0.156 3.844 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 -8.598 -19.448 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.212 4.212 6 H 0.141 0.859 7 C 0.328 3.672 8 O -0.412 6.412 9 N -0.345 5.345 10 C -0.064 4.064 11 C -0.004 4.004 12 C -0.178 4.178 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.093 -7.973 -19.401 22.861 hybrid contribution 0.444 0.081 0.974 1.073 sum -8.649 -7.892 -18.427 21.832 Atomic orbital electron populations 1.21399 0.92253 1.02072 1.02316 1.22389 0.95208 0.95216 1.01416 0.86468 1.23073 1.03075 1.01623 0.90863 1.22362 0.97990 1.05216 0.95596 0.85852 1.19664 0.84689 0.84524 0.78359 1.90714 1.68269 1.20674 1.61589 1.47817 1.24540 1.10344 1.51794 1.21813 0.99518 0.82686 1.02429 1.21502 0.84311 1.01351 0.93220 1.22050 0.99867 1.01571 0.94265 1.20543 0.93401 0.96427 0.86806 1.42349 1.07164 1.79657 1.08586 1.19215 0.88372 1.36336 0.93145 0.91193 1.24753 0.96370 1.02466 0.97537 1.69658 1.17187 1.53918 1.17614 0.86241 0.81301 0.78379 0.80116 1.21240 1.21681 1.21284 0.91840 0.91689 0.92451 0.88394 0.87917 0.92630 0.90699 0.91092 0.90496 0.89826 0.91607 0.92025 0.96410 0.96219 0.78326 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.16 0.38 -0.54 16 2 C -0.12 -1.22 5.92 -90.61 -0.54 -1.75 16 3 H 0.12 1.39 7.67 -51.93 -0.40 0.99 16 4 C -0.15 -1.26 9.88 -26.73 -0.26 -1.52 16 5 C -0.19 -1.97 5.01 -91.77 -0.46 -2.42 16 6 H 0.12 1.02 6.44 -51.93 -0.33 0.69 16 7 C 0.54 7.73 7.46 -10.99 -0.08 7.64 16 8 O -0.54 -9.92 15.84 5.55 0.09 -9.83 16 9 N -0.61 -7.87 2.87 -181.57 -0.52 -8.39 16 10 C 0.08 0.69 10.27 59.84 0.61 1.30 16 11 C 0.12 1.72 5.41 -4.04 -0.02 1.70 16 12 C -0.14 -2.47 5.65 -26.73 -0.15 -2.62 16 13 C 0.16 3.36 6.26 -4.04 -0.03 3.34 16 14 N -0.73 -19.86 5.60 -59.91 -0.34 -20.19 16 15 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 16 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 19 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.63 8.07 -51.93 -0.42 0.22 16 30 H 0.07 0.51 6.00 -51.93 -0.31 0.19 16 31 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.08 1.33 7.42 -51.93 -0.39 0.94 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 10.88 7.67 -40.82 -0.31 10.57 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -34.56 318.33 -7.40 -41.96 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.34 Total: 4.82 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.79 Total: -2.63 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.13 Total: -57.17 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.56 -7.40 -41.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569230198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.047 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds