Wall clock time and date at job start Sun Mar 29 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.55298 * 2 1 4 4 C 1.53006 * 117.49724 * 214.28556 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.51316 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.50700 * 117.51845 * 252.51832 * 5 4 2 8 8 O 1.21288 * 119.99910 * 68.71707 * 7 5 4 9 9 N 1.34770 * 119.99999 * 248.71846 * 7 5 4 10 10 C 1.46496 * 120.00437 * 0.02562 * 9 7 5 11 11 C 1.46511 * 119.99717 * 179.97438 * 9 7 5 12 12 C 1.52998 * 109.46816 * 90.00231 * 11 9 7 13 13 C 1.52997 * 109.46849 * 180.02562 * 12 11 9 14 14 N 1.46504 * 109.47379 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00073 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00358 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99662 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00469 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47106 * 60.00083 * 19 17 15 21 21 H 1.48498 * 109.47508 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46888 * 300.00140 * 19 17 15 23 23 H 1.08998 * 109.47083 * 274.33348 * 1 2 3 24 24 H 1.08994 * 109.46707 * 34.33440 * 1 2 3 25 25 H 1.09006 * 109.47074 * 154.33246 * 1 2 3 26 26 H 1.09003 * 117.49619 * 145.02013 * 4 2 1 27 27 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.46812 * 89.99835 * 10 9 7 29 29 H 1.08997 * 109.47143 * 209.99860 * 10 9 7 30 30 H 1.09000 * 109.46919 * 330.00053 * 10 9 7 31 31 H 1.08998 * 109.46674 * 209.99669 * 11 9 7 32 32 H 1.09000 * 109.47195 * 330.00141 * 11 9 7 33 33 H 1.08998 * 109.47040 * 299.99214 * 12 11 9 34 34 H 1.08991 * 109.47836 * 60.00065 * 12 11 9 35 35 H 1.09005 * 109.47146 * 299.99828 * 13 12 11 36 36 H 1.08999 * 109.47674 * 59.99574 * 13 12 11 37 37 H 0.96998 * 119.99528 * 0.02562 * 14 13 12 38 38 H 0.97001 * 120.00564 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1214 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 1.6112 -1.8580 1.2690 7 6 3.5290 -0.7805 1.4616 8 8 3.9705 0.3476 1.4032 9 7 4.1943 -1.7298 2.1490 10 6 3.6613 -3.0926 2.2191 11 6 5.4512 -1.3991 2.8254 12 6 5.1553 -0.9348 4.2528 13 6 6.4678 -0.5889 4.9589 14 7 6.1845 -0.1436 6.3256 15 6 7.2123 0.2209 7.1538 16 1 8.2317 0.1807 6.7994 17 6 6.9438 0.6433 8.4485 18 7 5.7014 0.6929 8.8804 19 14 8.3457 1.1413 9.5782 20 1 9.0863 2.2789 8.9761 21 1 7.7980 1.5491 10.8969 22 1 9.2675 -0.0088 9.7598 23 1 -0.3633 0.0777 1.0247 24 1 -0.3632 0.8486 -0.5796 25 1 -0.3633 -0.9263 -0.4452 26 1 3.1716 -0.8757 -1.2680 27 1 1.6112 -1.8588 -1.2678 28 1 4.0522 -3.6788 1.3875 29 1 3.9619 -3.5523 3.1606 30 1 2.5733 -3.0606 2.1614 31 1 6.0905 -2.2814 2.8555 32 1 5.9575 -0.6017 2.2815 33 1 4.5159 -0.0525 4.2227 34 1 4.6489 -1.7321 4.7968 35 1 7.1076 -1.4708 4.9890 36 1 6.9738 0.2087 4.4149 37 1 5.2690 -0.1078 6.6440 38 1 5.5138 0.9876 9.7853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569230198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:18 Heat of formation + Delta-G solvation = -29.888750 kcal Electronic energy + Delta-G solvation = -16871.630413 eV Core-core repulsion = 14135.113081 eV Total energy + Delta-G solvation = -2736.517332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22623 -38.23690 -37.24734 -36.40218 -34.07628 -31.71912 -29.61930 -27.97654 -27.10947 -25.36812 -23.67401 -22.46758 -21.61677 -19.96473 -19.18398 -18.38052 -17.37882 -16.62040 -16.42368 -16.09635 -15.49958 -15.31739 -14.99960 -14.76135 -14.11190 -14.01628 -13.65830 -13.57676 -13.40210 -13.16874 -12.87678 -12.75442 -12.69144 -12.46788 -12.29278 -12.11291 -11.87143 -11.82753 -11.31891 -10.98235 -10.96425 -10.78722 -9.70102 -9.06034 -7.98328 -5.29080 1.44469 1.45686 1.49769 1.55899 1.97926 2.54301 2.84495 3.34712 3.49594 3.77314 3.82849 3.86219 3.98186 4.12926 4.23675 4.37822 4.42103 4.49756 4.56579 4.65272 4.73628 4.75741 4.84717 4.87042 4.92578 4.98158 5.07486 5.22287 5.24807 5.26201 5.41575 5.44905 5.53238 6.23278 6.37979 7.14941 7.28708 8.03208 8.27374 9.25373 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042273 B = 0.003818 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.199169 B = 7330.984321 C = 7580.297789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 H 0.085 0.915 4 C -0.126 4.126 5 C -0.195 4.195 6 H 0.151 0.849 7 C 0.527 3.473 8 O -0.593 6.593 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.126 3.874 12 C -0.120 4.120 13 C 0.155 3.845 14 N -0.750 5.750 15 C -0.254 4.254 16 H 0.078 0.922 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.273 1.273 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.372 0.628 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.679 -10.639 -20.433 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.216 4.216 6 H 0.169 0.831 7 C 0.317 3.683 8 O -0.474 6.474 9 N -0.343 5.343 10 C -0.070 4.070 11 C 0.002 3.998 12 C -0.159 4.159 13 C 0.028 3.972 14 N -0.392 5.392 15 C -0.385 4.385 16 H 0.096 0.904 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.156 0.844 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.030 0.970 37 H 0.203 0.797 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.257 -10.070 -20.426 24.582 hybrid contribution 0.505 0.704 1.223 1.498 sum -8.751 -9.366 -19.203 23.088 Atomic orbital electron populations 1.21385 0.90176 1.03518 1.02352 1.22419 0.96743 0.94095 1.02435 0.89699 1.23180 1.02712 1.01057 0.89355 1.22406 0.96237 1.06196 0.96764 0.83131 1.20479 0.85755 0.83899 0.78159 1.90684 1.69910 1.23052 1.63711 1.47946 1.23772 1.11898 1.50648 1.22127 1.00836 0.80321 1.03721 1.21318 0.85702 1.02007 0.90738 1.21848 0.97367 1.00433 0.96295 1.20701 0.95516 0.96473 0.84505 1.42601 1.06231 1.79972 1.10426 1.19666 0.89238 1.35835 0.93799 0.90445 1.25679 0.99048 1.02968 0.99239 1.69829 1.19386 1.55170 1.17819 0.85116 0.78182 0.78342 0.77534 1.20440 1.21869 1.19877 0.92351 0.91254 0.90154 0.89510 0.84413 0.90258 0.90213 0.89134 0.87382 0.91773 0.94736 0.91291 0.94657 0.96959 0.79668 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 10.19 71.98 0.73 -0.80 16 2 C -0.14 -2.62 5.92 -10.79 -0.06 -2.69 16 3 H 0.08 2.16 7.67 -2.39 -0.02 2.14 16 4 C -0.13 -1.83 9.88 30.60 0.30 -1.53 16 5 C -0.20 -3.71 5.01 -11.54 -0.06 -3.77 16 6 H 0.15 1.99 6.44 -2.39 -0.02 1.97 16 7 C 0.53 15.07 7.46 87.66 0.65 15.72 16 8 O -0.59 -23.09 15.84 -3.06 -0.05 -23.14 16 9 N -0.61 -14.98 2.87 -846.76 -2.43 -17.41 16 10 C 0.07 1.02 10.27 127.77 1.31 2.33 16 11 C 0.13 3.57 5.41 86.38 0.47 4.03 16 12 C -0.12 -4.33 5.65 30.59 0.17 -4.15 16 13 C 0.15 6.69 6.26 86.38 0.54 7.23 16 14 N -0.75 -41.21 5.60 -343.44 -1.92 -43.13 16 15 C -0.25 -14.99 9.99 84.03 0.84 -14.15 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 17 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 18 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 19 Si 0.98 47.48 29.55 68.60 2.03 49.51 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.69 7.90 -2.38 -0.02 0.67 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.14 1.07 8.05 -2.39 -0.02 1.05 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.10 8.07 -2.39 -0.02 1.08 16 30 H 0.09 0.95 6.00 -2.39 -0.01 0.94 16 31 H 0.11 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.06 2.08 7.42 -2.39 -0.02 2.07 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.37 21.72 7.67 -92.71 -0.71 21.00 16 38 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -76.92 318.33 3.59 -73.33 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.32 Total: 24.29 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.37 Total: -1.92 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -4.07 Total: -122.07 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -76.92 3.59 -73.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569230198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.446 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds