Wall clock time and date at job start Sun Mar 29 2020 22:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47407 * 2 1 4 4 C 1.52999 * 109.47083 * 120.00068 * 2 1 3 5 5 C 1.52999 * 109.47381 * 184.99830 * 4 2 1 6 6 N 1.46503 * 109.47355 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00075 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00336 * 179.97438 * 7 6 5 10 10 H 1.09003 * 115.54851 * 325.58340 * 9 7 6 11 11 C 1.52997 * 117.49988 * 111.24773 * 9 7 6 12 12 C 1.53003 * 117.50166 * 179.91039 * 9 7 6 13 13 H 1.08996 * 117.49634 * 0.02562 * 12 9 7 14 14 C 1.52995 * 117.49575 * 145.02026 * 12 9 7 15 15 N 1.46500 * 109.47287 * 239.99930 * 2 1 3 16 16 C 1.36943 * 119.99878 * 84.99917 * 15 2 1 17 17 H 1.07996 * 119.99698 * 0.02562 * 16 15 2 18 18 C 1.38809 * 119.99902 * 179.97438 * 16 15 2 19 19 N 1.31620 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99967 * 20 18 16 22 22 H 1.48503 * 109.47261 * 300.00148 * 20 18 16 23 23 H 1.48500 * 109.47454 * 180.02562 * 20 18 16 24 24 H 1.08999 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47007 * 300.00362 * 1 2 3 26 26 H 1.09006 * 109.47089 * 59.99863 * 1 2 3 27 27 H 1.08992 * 109.47254 * 304.99975 * 4 2 1 28 28 H 1.09000 * 109.47451 * 65.00143 * 4 2 1 29 29 H 1.09005 * 109.47303 * 300.00087 * 5 4 2 30 30 H 1.09004 * 109.47256 * 59.99949 * 5 4 2 31 31 H 0.96996 * 120.00015 * 359.97438 * 6 5 4 32 32 H 1.08995 * 117.50220 * 214.98295 * 11 9 7 33 33 H 1.09009 * 117.49795 * 0.02562 * 11 9 7 34 34 H 1.09008 * 109.47093 * 60.00412 * 14 12 9 35 35 H 1.08998 * 109.47153 * 179.97438 * 14 12 9 36 36 H 1.08998 * 109.47555 * 300.00232 * 14 12 9 37 37 H 0.97000 * 120.00415 * 264.99865 * 15 2 1 38 38 H 0.97001 * 119.99542 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0531 -1.3045 2.5096 7 6 5.3740 -1.3400 2.7752 8 8 6.1584 -0.8001 2.0240 9 6 5.8763 -2.0505 4.0056 10 1 5.2253 -1.9969 4.8782 11 6 6.6781 -3.3373 3.8005 12 6 7.3866 -2.0572 4.2504 13 1 8.0168 -1.5473 3.5218 14 6 7.8673 -1.9886 5.7013 15 7 2.0183 -0.6906 -1.1961 16 6 2.1491 -0.0074 -2.3758 17 1 1.8926 1.0405 -2.4241 18 6 2.6124 -0.6617 -3.5090 19 7 2.9254 -1.9387 -3.4499 20 14 2.7914 0.2704 -5.1179 21 1 3.7466 1.3929 -4.9361 22 1 1.4692 0.8072 -5.5289 23 1 3.3003 -0.6480 -6.1681 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7516 -1.7715 1.2056 29 1 3.9994 -1.0729 0.4260 30 1 3.8532 0.4369 1.3574 31 1 3.4258 -1.7360 3.1106 32 1 6.5548 -4.1301 4.5382 33 1 6.8426 -3.6698 2.7755 34 1 7.4824 -2.8466 6.2525 35 1 8.9570 -2.0018 5.7240 36 1 7.5051 -1.0691 6.1611 37 1 2.2491 -1.6318 -1.1526 38 1 2.8328 -2.4226 -2.6144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570464231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:29 Heat of formation + Delta-G solvation = -20.056200 kcal Electronic energy + Delta-G solvation = -16966.504162 eV Core-core repulsion = 14230.413202 eV Total energy + Delta-G solvation = -2736.090960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90213 -37.25949 -36.38701 -34.42193 -32.45337 -29.56708 -28.69114 -27.95053 -24.61719 -23.42939 -22.19902 -20.96882 -20.37664 -19.59686 -17.48687 -17.28788 -15.83136 -15.35125 -14.79811 -14.57656 -14.41739 -13.98015 -13.55519 -13.43683 -12.99672 -12.89858 -12.60171 -12.19877 -12.19794 -11.60370 -11.53426 -11.07616 -10.90633 -10.67161 -10.54417 -10.51014 -10.25191 -10.19609 -9.92767 -9.64793 -9.11737 -8.91863 -8.81721 -7.00241 -6.05465 -3.05377 2.59221 3.23512 3.55266 3.59386 3.71153 3.76353 4.54655 4.60189 4.67628 4.71569 5.03151 5.11294 5.23350 5.30629 5.43130 5.50377 5.52955 5.56222 5.68565 5.76301 5.78550 5.83402 6.00451 6.10552 6.13601 6.28235 6.32308 6.41642 6.57765 6.66606 6.80655 6.99798 7.64920 7.85425 8.38365 8.80039 9.26660 10.13071 10.27568 11.42861 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.004655 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.837270 B = 6013.160526 C = 6664.224323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.123 3.877 6 N -0.726 5.726 7 C 0.536 3.464 8 O -0.538 6.538 9 C -0.190 4.190 10 H 0.121 0.879 11 C -0.150 4.150 12 C -0.125 4.125 13 H 0.117 0.883 14 C -0.122 4.122 15 N -0.735 5.735 16 C -0.330 4.330 17 H 0.064 0.936 18 C -0.045 4.045 19 N -0.944 5.944 20 Si 1.079 2.921 21 H -0.295 1.295 22 H -0.296 1.296 23 H -0.285 1.285 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.366 0.634 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -1.225 18.866 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.376 5.376 7 C 0.322 3.678 8 O -0.415 6.415 9 C -0.212 4.212 10 H 0.139 0.861 11 C -0.187 4.187 12 C -0.143 4.143 13 H 0.135 0.865 14 C -0.179 4.179 15 N -0.378 5.378 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.242 4.242 19 N -0.589 5.589 20 Si 0.910 3.090 21 H -0.223 1.223 22 H -0.224 1.224 23 H -0.211 1.211 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.230 0.770 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.199 0.801 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.887 -0.715 16.660 17.122 hybrid contribution -0.982 -0.304 1.917 2.175 sum 2.905 -1.018 18.577 18.830 Atomic orbital electron populations 1.22407 0.99037 1.00749 1.00091 1.20089 0.91875 0.95568 0.85556 0.93182 1.22076 0.93977 1.01676 0.99465 1.21429 0.94301 0.97214 0.87078 1.46041 1.07150 1.56942 1.27495 1.19651 0.82385 0.79946 0.85847 1.90728 1.55461 1.45725 1.49598 1.22316 0.96551 1.03606 0.98690 0.86133 1.23118 1.01762 0.90382 1.03453 1.22387 0.92284 1.00754 0.98898 0.86456 1.21393 1.01428 1.01895 0.93229 1.42463 1.79258 1.09766 1.06349 1.20024 1.41857 0.95069 0.89136 0.91798 1.25734 0.99380 0.97495 1.01607 1.70886 1.51356 1.08339 1.28353 0.83260 0.75814 0.74337 0.75622 1.22252 1.22357 1.21081 0.93660 0.94434 0.92642 0.91756 0.91748 0.90178 0.91788 0.77000 0.87875 0.88138 0.92438 0.91708 0.92017 0.80066 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.18 3.53 2.89 -67.93 -0.20 3.33 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 C -0.13 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.12 2.11 5.56 -4.04 -0.02 2.08 16 6 N -0.73 -10.13 5.56 -60.29 -0.33 -10.47 16 7 C 0.54 8.27 7.61 -10.99 -0.08 8.19 16 8 O -0.54 -10.89 16.26 5.55 0.09 -10.80 16 9 C -0.19 -2.10 5.91 -91.77 -0.54 -2.64 16 10 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 11 C -0.15 -1.49 9.88 -26.69 -0.26 -1.75 16 12 C -0.12 -1.31 5.92 -90.58 -0.54 -1.85 16 13 H 0.12 1.48 7.67 -51.93 -0.40 1.08 16 14 C -0.12 -0.93 10.19 37.15 0.38 -0.55 16 15 N -0.73 -18.33 4.57 -53.43 -0.24 -18.57 16 16 C -0.33 -9.37 9.93 -15.06 -0.15 -9.52 16 17 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.04 -1.32 5.50 -17.43 -0.10 -1.42 16 19 N -0.94 -29.70 13.70 55.49 0.76 -28.94 16 20 Si 1.08 26.55 29.92 -169.99 -5.09 21.46 16 21 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.71 7.75 -51.93 -0.40 1.30 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 32 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 33 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.06 0.37 7.90 -51.92 -0.41 -0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.37 9.46 6.63 -40.82 -0.27 9.19 16 38 H 0.25 7.87 6.77 -40.82 -0.28 7.59 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -34.07 319.65 -7.66 -41.73 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.38 Total: 9.64 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.29 Total: -8.88 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.18 Total: -57.97 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.09 Total: 21.46 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.07 -7.66 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570464231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.678 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds