Wall clock time and date at job start Sun Mar 29 2020 22:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47054 * 2 1 4 4 O 1.21280 * 120.00537 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99913 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99650 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46679 * 179.97438 * 6 5 3 8 8 H 1.08993 * 110.82117 * 303.11499 * 7 6 5 9 9 C 1.54894 * 110.75410 * 66.45847 * 7 6 5 10 10 C 1.54266 * 104.31305 * 156.31914 * 9 7 6 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 7 12 12 H 1.08995 * 110.04023 * 119.33232 * 11 10 9 13 13 N 1.46506 * 110.02971 * 240.71516 * 11 10 9 14 14 C 1.36934 * 120.00080 * 273.54217 * 13 11 10 15 15 H 1.07997 * 119.99814 * 0.02562 * 14 13 11 16 16 C 1.38804 * 120.00186 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00200 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00269 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47465 * 89.99985 * 18 16 14 20 20 H 1.48495 * 109.47105 * 210.00386 * 18 16 14 21 21 H 1.48505 * 109.46732 * 329.99760 * 18 16 14 22 22 C 1.54266 * 106.59800 * 359.97438 * 11 10 9 23 23 H 1.09006 * 109.47303 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47262 * 299.99669 * 1 2 3 25 25 H 1.09002 * 109.47160 * 60.00001 * 1 2 3 26 26 H 1.08996 * 109.47262 * 240.00331 * 2 1 3 27 27 H 1.09002 * 109.47160 * 119.99999 * 2 1 3 28 28 H 0.96999 * 119.99869 * 0.02562 * 5 3 2 29 29 H 1.09005 * 109.47462 * 60.00641 * 6 5 3 30 30 H 1.08995 * 109.47696 * 299.99964 * 6 5 3 31 31 H 1.09002 * 110.48891 * 37.57340 * 9 7 6 32 32 H 1.08998 * 110.48494 * 275.06427 * 9 7 6 33 33 H 1.09001 * 110.03084 * 95.60669 * 10 9 7 34 34 H 1.08995 * 110.03255 * 217.03136 * 10 9 7 35 35 H 0.97005 * 120.00035 * 93.54776 * 13 11 10 36 36 H 0.97009 * 120.00370 * 179.97438 * 17 16 14 37 37 H 1.09005 * 110.48526 * 142.29451 * 22 11 10 38 38 H 1.09007 * 110.48724 * 264.79935 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3757 3.0483 0.0023 8 1 5.7624 2.4916 0.8558 9 6 5.9256 2.4699 -1.3253 10 6 7.3409 3.0716 -1.4462 11 6 7.3434 4.3614 -0.6070 12 1 8.0833 4.2871 0.1899 13 7 7.6397 5.5147 -1.4605 14 6 8.9395 5.8692 -1.7054 15 1 9.7462 5.2984 -1.2698 16 6 9.2203 6.9616 -2.5145 17 7 8.2372 7.6571 -3.0458 18 14 10.9934 7.4448 -2.8492 19 1 11.4791 6.7371 -4.0610 20 1 11.0741 8.9115 -3.0669 21 1 11.8367 7.0700 -1.6857 22 6 5.9293 4.4988 -0.0060 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9877 0.9298 0.0005 29 1 3.4821 3.5619 0.8912 30 1 3.4827 3.5625 -0.8888 31 1 5.3047 2.7838 -2.1644 32 1 5.9764 1.3823 -1.2755 33 1 8.0791 2.3709 -1.0559 34 1 7.5602 3.3037 -2.4883 35 1 6.9152 6.0273 -1.8520 36 1 8.4335 8.4208 -3.6109 37 1 5.9829 4.8918 1.0093 38 1 5.3100 5.1424 -0.6309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656256817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:57 Heat of formation + Delta-G solvation = -52.711438 kcal Electronic energy + Delta-G solvation = -17003.705912 eV Core-core repulsion = 14266.198914 eV Total energy + Delta-G solvation = -2737.506998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83242 -38.10039 -34.95291 -33.35614 -32.90507 -30.69886 -29.02581 -27.32844 -25.15831 -23.42054 -22.98312 -20.58859 -19.77115 -19.16275 -17.23469 -17.03661 -16.18426 -15.84151 -15.20348 -14.81729 -14.16056 -13.99944 -13.63056 -13.27150 -13.04138 -12.62261 -12.48259 -12.13305 -11.96500 -11.57566 -11.38725 -11.29079 -10.79960 -10.75623 -10.59771 -10.52529 -10.32363 -10.11840 -9.98368 -9.75223 -9.61702 -9.08411 -8.88022 -6.93281 -5.75439 -3.03996 2.58192 3.14420 3.43712 3.48820 3.50632 4.57307 4.59883 4.81492 4.85543 4.89485 4.93567 5.08659 5.31697 5.52166 5.55127 5.56019 5.68531 5.70711 5.75358 5.89863 5.98984 6.01381 6.06616 6.09147 6.20342 6.33069 6.40853 6.46815 6.64133 6.72556 6.90217 7.15557 7.43601 7.71804 8.16949 8.43755 9.54318 10.13815 10.47738 11.47246 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.063649 B = 0.003792 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.807776 B = 7382.982311 C = 7541.916623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.506 3.494 4 O -0.544 6.544 5 N -0.728 5.728 6 C 0.126 3.874 7 C -0.105 4.105 8 H 0.078 0.922 9 C -0.114 4.114 10 C -0.146 4.146 11 C 0.175 3.825 12 H 0.048 0.952 13 N -0.723 5.723 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.118 4.118 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.062 0.938 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -16.570 6.934 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.292 3.708 4 O -0.421 6.421 5 N -0.380 5.380 6 C 0.003 3.997 7 C -0.124 4.124 8 H 0.096 0.904 9 C -0.152 4.152 10 C -0.187 4.187 11 C 0.065 3.935 12 H 0.066 0.934 13 N -0.364 5.364 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.157 4.157 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.234 0.766 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.566 -15.831 6.929 20.256 hybrid contribution 1.188 0.089 -0.431 1.267 sum -9.379 -15.742 6.498 19.443 Atomic orbital electron populations 1.21523 0.93124 1.01421 1.03402 1.21634 0.98650 0.94000 1.04215 1.20793 0.82251 0.91797 0.75913 1.90708 1.55366 1.46637 1.49407 1.46101 1.06998 1.09469 1.75424 1.21433 0.93783 0.82158 1.02307 1.22410 0.92576 0.98643 0.98810 0.90378 1.22377 0.97845 0.98519 0.96441 1.22990 0.94485 0.98547 1.02659 1.20817 0.93123 0.87608 0.92002 0.93358 1.42551 1.05550 1.31337 1.56949 1.19254 0.84426 1.09122 1.24196 0.91241 1.24744 0.97261 0.98466 1.00580 1.69663 1.29856 1.21272 1.37367 0.86207 0.84594 0.77509 0.77988 1.21779 1.21797 1.20800 1.22674 0.97783 0.94180 1.01070 0.92205 0.92026 0.91967 0.88991 0.89070 0.76633 0.91661 0.91265 0.91872 0.92983 0.93374 0.90937 0.78238 0.93522 0.91908 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 2 C -0.14 -1.09 6.42 -27.89 -0.18 -1.27 16 3 C 0.51 5.91 7.83 -10.99 -0.09 5.82 16 4 O -0.54 -8.79 15.98 5.56 0.09 -8.70 16 5 N -0.73 -7.56 5.40 -60.29 -0.33 -7.88 16 6 C 0.13 1.58 5.13 -4.04 -0.02 1.56 16 7 C -0.11 -1.32 2.98 -88.42 -0.26 -1.59 16 8 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.11 -1.54 5.96 -25.07 -0.15 -1.69 16 10 C -0.15 -2.51 6.59 -25.62 -0.17 -2.68 16 11 C 0.17 3.40 3.55 -66.81 -0.24 3.16 16 12 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 13 N -0.72 -18.06 5.04 -52.35 -0.26 -18.33 16 14 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.12 -1.89 5.99 -24.87 -0.15 -2.04 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.40 3.05 8.33 -40.82 -0.34 2.71 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.45 7.92 -51.93 -0.41 1.04 16 35 H 0.38 10.23 7.53 -40.82 -0.31 9.92 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.24 7.64 -51.93 -0.40 0.84 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -32.41 312.56 -7.73 -40.14 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.48 Total: 7.03 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.16 Total: -6.77 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.14 Total: -53.83 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.41 -7.73 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656256817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.569 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds