Wall clock time and date at job start Sun Mar 29 2020 22:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.52996 * 109.46894 * 175.00377 * 4 2 1 6 6 N 1.46505 * 109.46918 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99770 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00121 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99763 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.54937 * 34.41909 * 9 7 6 11 11 C 1.53002 * 117.49665 * 248.74520 * 9 7 6 12 12 C 1.53000 * 117.49881 * 180.08650 * 9 7 6 13 13 H 1.09001 * 117.49625 * 359.97438 * 12 9 7 14 14 C 1.52999 * 117.50020 * 215.00268 * 12 9 7 15 15 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 16 16 C 1.36936 * 119.99910 * 275.00466 * 15 2 1 17 17 H 1.08005 * 120.00209 * 359.97438 * 16 15 2 18 18 C 1.38815 * 120.00133 * 180.02562 * 16 15 2 19 19 N 1.31621 * 119.99867 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46971 * 60.00329 * 20 18 16 22 22 H 1.48502 * 109.47024 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47177 * 300.00083 * 20 18 16 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 28 28 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 29 29 H 1.09001 * 109.46995 * 299.99751 * 5 4 2 30 30 H 1.08998 * 109.47867 * 60.00073 * 5 4 2 31 31 H 0.96994 * 120.00434 * 359.97438 * 6 5 4 32 32 H 1.09001 * 117.49788 * 359.97438 * 11 9 7 33 33 H 1.08994 * 117.49672 * 145.01997 * 11 9 7 34 34 H 1.08996 * 109.46914 * 59.99649 * 14 12 9 35 35 H 1.08998 * 109.46944 * 179.97438 * 14 12 9 36 36 H 1.09000 * 109.46959 * 300.00078 * 14 12 9 37 37 H 0.96997 * 120.00110 * 94.99637 * 15 2 1 38 38 H 0.96997 * 120.00144 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 7 4.0532 -1.3034 -2.5101 7 6 5.3741 -1.3387 -2.7757 8 8 6.1583 -0.7988 -2.0246 9 6 5.8763 -2.0481 -4.0068 10 1 5.2252 -1.9936 -4.8793 11 6 6.6781 -3.3351 -3.8028 12 6 7.3866 -2.0546 -4.2517 13 1 8.0168 -1.5454 -3.5226 14 6 7.8674 -1.9842 -5.7025 15 7 2.0184 -0.6906 1.1962 16 6 2.1490 -0.0075 2.3758 17 1 1.8925 1.0406 2.4242 18 6 2.6122 -0.6617 3.5091 19 7 2.9253 -1.9387 3.4500 20 14 2.7912 0.2704 5.1181 21 1 1.4688 0.8070 5.5289 22 1 3.3000 -0.6481 6.1682 23 1 3.7462 1.3929 4.9363 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7715 -1.2056 28 1 1.6055 -0.2617 -2.1369 29 1 3.8532 0.4370 -1.3572 30 1 3.9995 -1.0728 -0.4259 31 1 3.4259 -1.7349 -3.1111 32 1 6.8427 -3.6685 -2.7782 33 1 6.5548 -4.1272 -4.5413 34 1 7.5051 -1.0640 -6.1610 35 1 8.9570 -1.9965 -5.7252 36 1 7.4823 -2.8413 -6.2549 37 1 2.2490 -1.6317 1.1527 38 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662959828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:30 Heat of formation + Delta-G solvation = -20.343585 kcal Electronic energy + Delta-G solvation = -16925.783089 eV Core-core repulsion = 14189.679667 eV Total energy + Delta-G solvation = -2736.103422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84183 -37.17706 -36.26635 -34.27621 -32.22153 -29.59788 -28.79123 -28.00042 -24.58601 -23.57711 -22.11343 -20.91852 -20.24370 -19.47633 -17.43003 -17.06976 -15.74959 -15.30694 -14.84709 -14.50519 -14.19415 -13.79524 -13.47344 -13.38061 -12.94707 -12.83838 -12.45873 -12.15934 -12.02142 -11.56700 -11.52309 -11.05715 -10.89055 -10.71856 -10.61556 -10.47418 -10.27552 -10.20047 -9.99498 -9.62015 -9.54934 -8.88759 -8.74956 -6.92434 -5.72114 -3.00832 2.65046 3.30230 3.47968 3.52393 3.53171 3.75786 4.58962 4.63625 4.64309 4.72337 5.08361 5.14487 5.32372 5.42539 5.47236 5.53349 5.57034 5.59343 5.71613 5.82065 5.86858 5.90766 6.09664 6.16943 6.20315 6.37650 6.42204 6.52018 6.71801 6.75600 6.88818 7.08346 7.72076 7.74186 8.44965 8.46316 9.57514 10.14285 10.48931 11.50537 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.004645 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.799428 B = 6027.184339 C = 6684.251323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.725 5.725 7 C 0.536 3.464 8 O -0.539 6.539 9 C -0.190 4.190 10 H 0.120 0.880 11 C -0.150 4.150 12 C -0.125 4.125 13 H 0.117 0.883 14 C -0.122 4.122 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.396 0.604 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.383 0.617 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 -1.689 -18.757 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.376 5.376 7 C 0.322 3.678 8 O -0.416 6.416 9 C -0.211 4.211 10 H 0.138 0.862 11 C -0.187 4.187 12 C -0.144 4.144 13 H 0.135 0.865 14 C -0.179 4.179 15 N -0.366 5.366 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.230 0.770 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.217 0.783 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.599 -1.164 -18.041 18.433 hybrid contribution -0.365 -0.065 0.687 0.780 sum 3.234 -1.229 -17.354 17.695 Atomic orbital electron populations 1.22426 0.99150 1.00816 0.99946 1.20154 0.91864 0.95576 0.86045 0.93318 1.22054 0.93926 1.01775 0.99301 1.21459 0.94388 0.97133 0.87149 1.46047 1.07096 1.56920 1.27492 1.19631 0.82430 0.79961 0.85819 1.90722 1.55477 1.45760 1.49618 1.22320 0.96482 1.03578 0.98735 0.86161 1.23114 1.01784 0.90371 1.03451 1.22383 0.92360 1.00801 0.98853 0.86476 1.21391 1.01389 1.01877 0.93277 1.42445 1.78116 1.10648 1.05351 1.19187 1.36622 0.93833 0.87375 0.91263 1.24722 1.02119 0.95955 0.98042 1.69645 1.50876 1.08678 1.28955 0.86290 0.77721 0.78672 0.83646 1.21359 1.21743 1.21243 0.92723 0.94587 0.93533 0.91616 0.91959 0.91909 0.89781 0.77038 0.88118 0.87918 0.92039 0.91751 0.92449 0.78296 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.38 2.89 -67.93 -0.20 3.19 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 6 N -0.73 -10.18 5.56 -60.29 -0.33 -10.52 16 7 C 0.54 8.31 7.61 -10.98 -0.08 8.22 16 8 O -0.54 -10.93 16.26 5.56 0.09 -10.84 16 9 C -0.19 -2.11 5.91 -91.77 -0.54 -2.65 16 10 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.15 -1.50 9.88 -26.69 -0.26 -1.76 16 12 C -0.13 -1.33 5.92 -90.58 -0.54 -1.86 16 13 H 0.12 1.49 7.67 -51.93 -0.40 1.09 16 14 C -0.12 -0.94 10.19 37.16 0.38 -0.56 16 15 N -0.72 -17.99 4.57 -53.42 -0.24 -18.24 16 16 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 20 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.80 7.75 -51.93 -0.40 1.40 16 31 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 37 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -32.90 321.35 -7.72 -40.62 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.49 Total: 9.52 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.29 Total: -5.36 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.15 Total: -56.60 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.90 -7.72 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662959828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.276 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds