Wall clock time and date at job start Sun Mar 29 2020 22:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46914 * 2 1 4 4 O 1.21272 * 120.00142 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99631 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99837 * 184.97737 * 5 3 2 7 7 C 1.53004 * 109.47435 * 295.81508 * 6 5 3 8 8 C 1.52995 * 109.47176 * 55.81542 * 6 5 3 9 9 N 1.46502 * 109.47226 * 59.99808 * 8 6 5 10 10 C 1.36935 * 120.00115 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00068 * 0.02562 * 10 9 8 12 12 C 1.38809 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31625 * 119.99620 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00277 * 180.02562 * 12 10 9 15 15 H 1.48489 * 109.47099 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46894 * 120.00407 * 14 12 10 17 17 H 1.48499 * 109.47341 * 239.99953 * 14 12 10 18 18 C 1.52995 * 109.47142 * 175.81491 * 6 5 3 19 19 C 1.53005 * 117.49912 * 132.72796 * 18 6 5 20 20 C 1.53007 * 117.50045 * 64.06844 * 18 6 5 21 21 H 1.09004 * 109.47314 * 59.99793 * 1 2 3 22 22 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46816 * 299.99565 * 1 2 3 24 24 H 1.09004 * 109.46669 * 240.00402 * 2 1 3 25 25 H 1.08996 * 109.47476 * 119.99957 * 2 1 3 26 26 H 0.97000 * 120.00371 * 4.98586 * 5 3 2 27 27 H 1.08999 * 109.46573 * 59.99758 * 7 6 5 28 28 H 1.09006 * 109.46681 * 300.00383 * 7 6 5 29 29 H 1.08994 * 109.47577 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47573 * 180.02562 * 8 6 5 31 31 H 1.09009 * 109.47076 * 299.99893 * 8 6 5 32 32 H 0.96997 * 119.99730 * 0.02562 * 9 8 6 33 33 H 0.97003 * 119.99490 * 179.97438 * 13 12 10 34 34 H 1.09004 * 115.55373 * 278.39682 * 18 6 5 35 35 H 1.08999 * 117.49848 * 359.97438 * 19 18 6 36 36 H 1.08998 * 117.50147 * 145.02003 * 19 18 6 37 37 H 1.08996 * 117.49865 * 214.98186 * 20 18 6 38 38 H 1.09003 * 117.49715 * 359.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8466 3.0436 0.1106 7 6 3.4048 3.8417 -1.1178 8 6 3.2714 3.6899 1.3725 9 7 3.6944 2.9258 2.5487 10 6 3.2986 3.3189 3.7993 11 1 2.6743 4.1921 3.9185 12 6 3.6998 2.5953 4.9138 13 7 4.4611 1.5314 4.7685 14 14 3.1593 3.1312 6.6197 15 1 2.3145 4.3476 6.5118 16 1 2.3776 2.0409 7.2565 17 1 4.3557 3.4306 7.4468 18 6 5.3743 3.0370 0.1920 19 6 6.1340 4.0136 -0.7080 20 6 6.1443 2.5157 -1.0230 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.9872 0.9330 -0.0721 27 1 2.3164 3.8464 -1.1757 28 1 3.8146 3.3812 -2.0168 29 1 3.7683 4.8660 -1.0357 30 1 3.6350 4.7142 1.4542 31 1 2.1829 3.6946 1.3145 32 1 4.2554 2.1418 2.4417 33 1 4.7418 1.0259 5.5474 34 1 5.7917 2.8325 1.1780 35 1 5.5454 4.6606 -1.3584 36 1 7.0514 4.4514 -0.3143 37 1 7.0684 1.9685 -0.8364 38 1 5.5624 2.1770 -1.8803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665969019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:51 Heat of formation + Delta-G solvation = -28.078809 kcal Electronic energy + Delta-G solvation = -18242.054831 eV Core-core repulsion = 15505.615984 eV Total energy + Delta-G solvation = -2736.438847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32061 -39.04122 -36.37483 -34.93772 -33.81021 -32.79924 -31.01341 -27.59567 -25.87039 -24.59975 -23.92390 -23.11839 -20.96739 -20.10040 -19.22240 -18.27408 -17.00290 -16.74827 -16.44280 -16.20770 -15.55225 -15.14788 -14.96711 -14.53306 -14.06013 -13.78404 -13.62659 -13.30507 -13.08248 -12.97355 -12.83264 -12.59530 -12.42826 -12.20694 -12.05851 -11.98129 -11.96211 -11.76619 -11.23727 -11.07154 -10.91239 -10.41784 -9.85847 -8.94415 -7.96461 -5.22401 1.43236 1.43872 1.54180 1.83575 2.31721 2.54259 3.06370 3.36142 3.64696 3.85371 3.96170 3.98886 4.17722 4.24485 4.27619 4.31364 4.47611 4.62176 4.78429 4.80730 4.88692 4.93403 4.98261 5.02228 5.03025 5.11433 5.14486 5.29295 5.33061 5.37249 5.44530 5.48812 5.77424 6.26552 6.78779 7.33621 7.48526 8.08579 8.37702 9.26641 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.008939 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.429864 B = 3131.564031 C = 4136.420742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.140 4.140 3 C 0.507 3.493 4 O -0.578 6.578 5 N -0.707 5.707 6 C 0.209 3.791 7 C -0.151 4.151 8 C 0.143 3.857 9 N -0.728 5.728 10 C -0.243 4.243 11 H 0.061 0.939 12 C -0.070 4.070 13 N -0.963 5.963 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.292 1.292 17 H -0.289 1.289 18 C -0.176 4.176 19 C -0.166 4.166 20 C -0.153 4.153 21 H 0.055 0.945 22 H 0.085 0.915 23 H 0.031 0.969 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.408 0.592 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.021 0.979 32 H 0.378 0.622 33 H 0.251 0.749 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -2.486 -15.267 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.180 4.180 3 C 0.296 3.704 4 O -0.459 6.459 5 N -0.358 5.358 6 C 0.123 3.877 7 C -0.209 4.209 8 C 0.016 3.984 9 N -0.371 5.371 10 C -0.375 4.375 11 H 0.079 0.921 12 C -0.262 4.262 13 N -0.614 5.614 14 Si 0.798 3.202 15 H -0.199 1.199 16 H -0.219 1.219 17 H -0.216 1.216 18 C -0.195 4.195 19 C -0.203 4.203 20 C -0.190 4.190 21 H 0.075 0.925 22 H 0.104 0.896 23 H 0.050 0.950 24 H 0.142 0.858 25 H 0.110 0.890 26 H 0.243 0.757 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.211 0.789 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.524 -1.709 -15.138 15.243 hybrid contribution 0.188 -0.212 1.513 1.539 sum 0.712 -1.922 -13.625 13.779 Atomic orbital electron populations 1.21473 0.93442 1.02370 1.01558 1.21674 0.98331 0.92294 1.05655 1.21271 0.82178 0.92647 0.74343 1.90591 1.56444 1.47753 1.51064 1.45950 1.06930 1.08774 1.74181 1.19796 0.91454 0.82257 0.94183 1.22175 1.02081 1.00166 0.96479 1.21108 0.97046 0.93689 0.86601 1.42297 1.61017 1.32688 1.01138 1.19573 1.24340 1.08090 0.85512 0.92065 1.25424 1.01377 0.98314 1.01106 1.69793 1.41700 1.20441 1.29423 0.85145 0.77276 0.77341 0.80454 1.19895 1.21879 1.21562 1.22259 0.91716 1.09130 0.96421 1.23190 1.01845 0.93302 1.01956 1.23039 1.01819 0.96530 0.97633 0.92545 0.89647 0.94961 0.85767 0.88953 0.75652 0.92765 0.90310 0.90806 0.96773 0.96119 0.78903 0.93991 0.89767 0.86993 0.88399 0.87763 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.20 71.98 0.66 -2.71 16 2 C -0.14 -3.58 6.42 29.85 0.19 -3.39 16 3 C 0.51 17.37 7.24 87.66 0.63 18.00 16 4 O -0.58 -24.33 12.22 -3.01 -0.04 -24.37 16 5 N -0.71 -22.09 4.74 -422.94 -2.00 -24.10 16 6 C 0.21 7.03 0.54 3.60 0.00 7.03 16 7 C -0.15 -4.32 7.10 71.98 0.51 -3.81 16 8 C 0.14 6.49 4.90 86.38 0.42 6.91 16 9 N -0.73 -38.67 5.04 -343.45 -1.73 -40.40 16 10 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 11 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 12 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 13 N -0.96 -58.95 13.06 21.65 0.28 -58.67 16 14 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 15 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 18 C -0.18 -5.32 4.86 -10.79 -0.05 -5.37 16 19 C -0.17 -3.85 9.64 30.62 0.30 -3.55 16 20 C -0.15 -3.23 9.72 30.62 0.30 -2.94 16 21 H 0.06 1.45 8.10 -2.38 -0.02 1.43 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.03 1.01 8.10 -2.39 -0.02 0.99 16 24 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.41 10.61 8.38 -92.71 -0.78 9.83 16 27 H 0.05 1.82 6.31 -2.39 -0.02 1.81 16 28 H 0.08 1.82 6.99 -2.38 -0.02 1.80 16 29 H 0.07 1.94 6.78 -2.39 -0.02 1.93 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.02 1.07 6.04 -2.38 -0.01 1.05 16 32 H 0.38 20.47 6.62 -92.71 -0.61 19.85 16 33 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.08 3.21 7.08 -2.39 -0.02 3.20 16 35 H 0.11 2.32 5.88 -2.39 -0.01 2.31 16 36 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.11 1.96 7.35 -2.39 -0.02 1.94 16 Total: -1.00 -71.63 303.67 2.48 -69.15 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.33 Total: 35.51 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.27 Total: -7.04 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -3.45 Total: -123.16 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.04 Total: -24.37 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -71.63 2.48 -69.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665969019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.069 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds