Wall clock time and date at job start Sun Mar 29 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47213 * 60.00246 * 11 9 7 13 13 H 1.48502 * 109.47317 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47081 * 299.99875 * 11 9 7 15 15 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 16 16 C 1.34775 * 119.99699 * 85.00331 * 15 2 1 17 17 O 1.21281 * 120.00101 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00148 * 180.02562 * 16 15 2 19 19 H 1.08993 * 115.54709 * 34.32893 * 18 16 15 20 20 C 1.53001 * 117.49869 * 248.62649 * 18 16 15 21 21 C 1.52999 * 117.49812 * 180.02562 * 18 16 15 22 22 H 1.08993 * 117.50156 * 359.97377 * 21 18 16 23 23 C 1.53000 * 117.49381 * 214.97535 * 21 18 16 24 24 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 25 25 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 27 27 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 28 28 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 29 29 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 30 30 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 31 31 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 32 32 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 33 33 H 0.97002 * 120.00479 * 265.00508 * 15 2 1 34 34 H 1.09007 * 117.50064 * 359.97438 * 20 18 16 35 35 H 1.08991 * 117.49950 * 145.01833 * 20 18 16 36 36 H 1.09000 * 109.47276 * 60.00564 * 23 21 18 37 37 H 1.09006 * 109.46849 * 179.97438 * 23 21 18 38 38 H 1.08991 * 109.47582 * 300.00009 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3955 -1.3449 2.7769 8 1 6.0940 -0.8648 2.1076 9 6 5.8586 -2.0037 3.9076 10 7 5.0073 -2.5893 4.7230 11 14 7.6898 -2.0594 4.2718 12 1 8.2061 -0.6756 4.4264 13 1 7.9221 -2.8179 5.5272 14 1 8.3973 -2.7294 3.1512 15 7 2.0183 -0.6907 -1.1962 16 6 2.1471 -0.0184 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6488 -0.7289 -3.5878 19 1 2.3509 -1.7731 -3.6819 20 6 4.0307 -0.3377 -4.1153 21 6 2.7734 0.0894 -4.8745 22 1 2.4920 1.1415 -4.8311 23 6 2.4703 -0.6208 -6.1954 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.7515 -1.7716 1.2056 28 1 1.6053 -0.2618 2.1370 29 1 3.8532 0.4367 1.3574 30 1 3.9993 -1.0730 0.4260 31 1 3.4256 -1.7352 3.1112 32 1 5.3308 -3.0494 5.5132 33 1 2.2490 -1.6319 -1.1526 34 1 4.5768 0.4339 -3.5725 35 1 4.6422 -1.1247 -4.5566 36 1 1.4432 -0.9857 -6.1844 37 1 2.5982 0.0786 -7.0216 38 1 3.1530 -1.4610 -6.3212 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:14 Heat of formation + Delta-G solvation = -21.168600 kcal Electronic energy + Delta-G solvation = -16980.398438 eV Core-core repulsion = 14244.259241 eV Total energy + Delta-G solvation = -2736.139197 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05495 -37.45110 -36.05868 -34.31467 -31.91504 -30.67170 -28.83562 -27.85767 -24.63459 -23.74121 -21.65089 -21.07216 -20.48626 -20.00067 -17.54033 -16.97684 -16.16004 -15.09305 -14.76033 -14.61737 -14.09227 -13.82625 -13.50726 -13.36804 -13.30189 -12.94491 -12.80666 -12.41942 -12.16437 -11.84023 -11.58321 -11.20237 -11.01461 -10.78292 -10.63365 -10.56475 -10.49578 -10.22892 -10.06730 -9.71711 -9.67242 -8.96643 -8.84364 -6.92421 -5.76658 -3.05438 2.55653 3.19421 3.44279 3.48413 3.49662 3.72364 4.54397 4.58354 4.62403 4.69159 4.94907 5.07394 5.12325 5.28650 5.37872 5.45631 5.52081 5.55565 5.59047 5.73428 5.78141 5.79729 5.84919 5.95319 6.05953 6.13623 6.25409 6.29777 6.34972 6.60373 6.82580 6.88168 7.62937 7.69686 8.33171 8.42551 9.53398 10.11256 10.46056 11.46288 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.004673 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.381314 B = 5989.981137 C = 6832.609231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.715 5.715 16 C 0.543 3.457 17 O -0.547 6.547 18 C -0.191 4.191 19 H 0.122 0.878 20 C -0.147 4.147 21 C -0.125 4.125 22 H 0.116 0.884 23 C -0.123 4.123 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.383 0.617 32 H 0.256 0.744 33 H 0.402 0.598 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 2.022 -17.614 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.213 1.213 15 N -0.365 5.365 16 C 0.330 3.670 17 O -0.425 6.425 18 C -0.212 4.212 19 H 0.140 0.860 20 C -0.185 4.185 21 C -0.143 4.143 22 H 0.134 0.866 23 C -0.180 4.180 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.237 0.763 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.784 2.890 -17.625 19.483 hybrid contribution 0.918 -0.797 0.641 1.374 sum -6.865 2.094 -16.984 18.439 Atomic orbital electron populations 1.22159 0.95498 1.01965 1.02254 1.20982 0.93533 0.97688 0.83835 0.89463 1.22062 0.98053 1.00777 0.96387 1.20630 0.90394 0.95603 0.90721 1.42364 1.05334 1.65036 1.25101 1.19196 0.83820 1.28425 1.05702 0.91302 1.24741 0.97729 1.00845 0.97672 1.69652 1.32879 1.40574 1.15245 0.86257 0.85090 0.77512 0.77275 1.21237 1.21648 1.21267 1.46058 1.66755 1.14291 1.09429 1.19624 0.76986 0.86655 0.83768 1.90669 1.50691 1.16053 1.85132 1.22316 1.03698 1.00861 0.94373 0.86040 1.23098 0.89488 1.03441 1.02461 1.22353 1.01017 1.00197 0.90767 0.86593 1.21396 1.01693 0.99976 0.94942 0.92463 0.92543 0.91551 0.91377 0.90270 0.96484 0.96334 0.78323 0.93462 0.76328 0.88148 0.87794 0.92066 0.91787 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.48 37.16 0.35 -1.59 16 2 C 0.14 2.02 2.58 -67.93 -0.17 1.84 16 3 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.11 16 6 N -0.73 -18.84 5.60 -59.91 -0.34 -19.17 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 11 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 N -0.71 -9.30 4.53 -53.80 -0.24 -9.55 16 16 C 0.54 7.58 7.58 -10.98 -0.08 7.49 16 17 O -0.55 -9.50 15.92 5.56 0.09 -9.42 16 18 C -0.19 -2.06 5.91 -91.77 -0.54 -2.60 16 19 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 20 C -0.15 -1.47 9.88 -26.75 -0.26 -1.74 16 21 C -0.12 -1.24 5.92 -90.64 -0.54 -1.78 16 22 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 23 C -0.12 -0.91 10.19 37.16 0.38 -0.54 16 24 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 31 H 0.38 10.23 7.67 -40.82 -0.31 9.91 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.40 4.58 8.60 -40.82 -0.35 4.23 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -32.63 320.79 -7.69 -40.31 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.46 Total: 8.68 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.27 Total: -5.54 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.15 Total: -56.43 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.63 -7.69 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.145 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds